Sbno2

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000013987 0.1 0.06 1.6e-10 0.08 0.07 0.08 0.07 2.5e-09 1.8e-08 3.2e-09 1.0e-08
2 Adipose isoform ratio ENSRNOT00000068197 0.02 0.02 8.1e-03 0.01 0 0 0 3.1e-02 1.0e-01 1.1e-01 1.2e-01
3 Liver gene expression ENSRNOG00000013987 0.1 0.07 4.4e-08 0.05 0.06 0.07 0.06 2.7e-06 1.1e-07 8.3e-08 2.5e-07
4 Liver mRNA stability ENSRNOG00000013987 0.08 0.06 5.4e-06 0.02 0.04 0.05 0.04 9.0e-04 1.2e-05 7.8e-06 1.4e-05

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail4.815.523.34.64.82.8-3.2
BMI without tail2.24.79.11.83.00.5-2.5
Body weight0.93.76.02.12.41.2-1.7
Epididymis fat weight0.20.40.7-0.9-0.6-0.70.3
Glucose1.11.72.61.61.60.8-1.1
Heart weight0.20.31.0-0.4-0.3-1.0-0.1
Left kidney weight0.00.10.3-0.1-0.60.10.4
Right kidney weight0.92.74.0-1.9-2.0-1.51.0
Tail length2.26.711.6-3.4-2.6-2.71.2
Length with tail1.45.07.3-2.6-2.7-1.61.9
Length without tail0.30.71.5-0.1-0.90.71.2
Liver weight, left1.62.54.01.72.01.1-1.3
Liver weight, right1.01.62.21.41.41.5-0.6
Parametrial fat weight0.30.61.2-0.9-0.5-1.1-0.1
Retroperitoneal fat weight0.20.61.10.71.00.4-1.0
Intraocular pressure0.91.32.5-0.00.7-1.5-1.6
Extensor digitorum longus weight3.413.824.03.64.92.0-3.8
Soleus weight6.619.227.75.15.33.4-3.5
Tibialis anterior weight0.82.74.61.62.21.4-1.4
Tibia length0.61.82.7-1.6-1.5-1.40.8
Number of licking bursts0.70.82.0-0.10.6-1.0-1.4
Food consumed during 24 hour testing period0.70.81.70.81.00.1-1.3
Times rat made contact with spout0.80.92.60.20.8-0.7-1.6
Mean time between licks in bursts3.04.26.3-2.5-2.2-2.21.0
Mean num. licks in bursts0.00.00.10.20.10.30.1
Std. dev. time between licks in bursts0.50.60.9-0.9-1.0-0.40.7
Water consumed over 24 hours0.40.50.90.90.50.9-0.2
Indifference point 0 sec0.10.20.30.60.20.60.1
Indifference point AUC0.50.60.8-0.8-0.9-0.90.4
Indifference point function ln k0.30.40.70.50.80.1-0.8
Indifference point function log k0.30.40.70.50.80.1-0.8
Delay discounting total patch changes 0 sec0.00.10.20.40.20.3-0.1
Delay discounting total patch changes 12 sec0.30.40.80.60.9-0.1-0.8
Delay discounting total patch changes 18 sec0.81.11.6-1.2-1.3-0.90.8
Delay discounting total patch changes 24 sec0.10.10.2-0.0-0.5-0.00.5
Delay discounting total patch changes 6 sec0.20.30.7-0.3-0.8-0.30.5
Delay discounting time to switch 0 sec1.52.36.01.30.32.41.1
Delay discounting water rate 0 sec1.42.24.4-0.51.1-1.7-2.1
Delay discounting water rate 12 sec2.13.16.31.02.2-0.7-2.5
Delay discounting water rate 18 sec2.93.97.0-0.61.3-2.5-2.7
Delay discounting water rate 24 sec2.94.19.00.12.0-1.8-3.0
Delay discounting water rate 6 sec1.31.84.2-0.80.5-2.0-1.5
Locomotor activity3.04.78.0-1.9-2.8-0.52.6
Locomotor testing distance1.62.74.5-1.4-2.1-0.61.9
Locomotor testing rearing0.10.20.5-0.20.3-0.7-0.5
Light reinforcement 14.78.714.0-3.0-3.7-1.53.1
Light reinforcement 21.82.44.0-1.4-2.0-0.51.8
Reaction time number correct1.62.25.20.41.7-0.8-2.3
Reaction time mean minus median0.50.61.3-1.0-0.6-1.1-0.1
Reaction time mean minus median AUC0.10.10.3-0.0-0.30.50.5
Reaction time num false alarms0.60.81.70.01.1-0.7-1.3
Reaction time num false alarms AUC0.81.22.40.01.3-0.8-1.6
Reaction time trials correct on left1.62.25.20.41.7-0.8-2.3
Reaction time trials on left1.52.14.90.41.7-0.7-2.2
Reaction time mean0.00.00.10.3-0.10.20.1
Reaction time mean AUC0.10.10.20.5-0.00.30.1
Median of all reaction times0.30.30.80.90.30.70.0
Reaction time omissions0.20.20.6-0.1-0.8-0.10.5
Reaction time false alarm rate0.00.00.10.10.30.1-0.1
Reaction time premature initiation rate0.81.12.4-1.0-0.9-1.6-0.0
Reaction time premature initiations1.21.74.4-0.9-0.0-2.1-1.2
Std. dev. reaction times0.10.20.3-0.4-0.4-0.6-0.0
Reaction time trials completed1.52.14.90.41.7-0.7-2.2
Reaction time trials AUC1.72.55.90.31.7-1.0-2.4
Social response proportion1.01.02.1-0.7-1.4-0.01.3
Social responses5.26.710.7-2.8-3.3-1.52.5
Social time0.40.61.11.00.50.90.1
Conditioned locomotion1.61.93.41.01.8-0.2-1.8
Cocaine response after cond. corrected5.96.610.62.33.30.1-3.2
Cocaine response after cond. not corrected6.26.911.42.23.40.1-3.4
Cocaine response before conditioning0.40.50.9-1.0-0.7-0.40.6
Saline control response0.00.10.10.20.3-0.1-0.3
Condit. Reinf. active minus inactive responses1.62.04.2-1.6-1.2-2.0-0.0
Condit. Reinf. active-inactive response ratio0.50.51.30.10.2-1.1-0.8
Condit. Reinf. active responses1.42.03.2-1.7-1.4-1.80.2
Condit. Reinf. inactive responses0.91.12.2-1.5-1.0-1.10.2
Condit. Reinf. lever presses1.52.13.7-1.7-1.3-1.90.3
Condit. Reinf. lever reinforcers received1.21.73.6-1.5-1.0-1.9-0.2
Pavlov. Cond. lever latency0.40.61.10.80.71.1-0.2
Pavlov. Cond. magazine entry latency0.30.40.7-0.9-0.5-0.60.3
Pavlov. Cond. change in total contacts0.40.61.2-0.7-0.7-1.10.2
Pavlov. Cond. index score0.50.71.3-1.0-0.7-1.10.2
Pavlov. Cond. latency score0.40.60.8-0.8-0.8-0.90.4
Pavlov. Cond. lever contacts0.50.71.7-0.9-0.5-1.3-0.1
Pavlov. Cond. magazine entry number0.50.61.21.10.70.7-0.4
Pavlov. Cond. intertrial magazine entries0.50.61.40.41.0-0.3-1.2
Pavlov. Cond. lever-magazine prob. diff.0.50.71.0-1.0-0.8-1.00.3
Pavlov. Cond. response bias1.21.73.3-1.5-1.0-1.80.1
Conditioned reinforcement - actives1.31.31.8-1.4-1.3-0.91.0
Conditioned reinforcement - inactives0.50.61.30.51.10.2-0.9
Conditioned locomotion4.65.57.8-2.8-2.7-1.91.8
Intermittent access intake day 1-15 change4.64.67.6-2.8-2.2-2.11.2
Intermittent access intake escalation4.54.57.8-2.8-1.8-2.60.5
Intermittent access intake escalation 25.55.48.7-2.9-2.0-2.90.6
Intermitt. access day 1 inactive lever presses0.30.30.7-0.40.2-0.8-0.5
Intermitt. access day 15 inactive lever presses0.40.40.8-0.9-0.5-0.70.2
Intermitt. access escalation Index0.50.41.10.6-0.21.00.5
Intermittent access day 1 total infusions0.10.10.10.40.20.40.1
Intermittent access day 15 total infusions1.31.42.6-1.6-1.0-1.40.4
Intermittent access terminal intake (last 3 days)0.60.71.2-1.1-0.8-0.80.7
Intermittent access total infusions0.10.10.2-0.5-0.2-0.40.1
Intermittent access day 1 locomotion0.30.30.5-0.7-0.5-0.50.2
Intermittent access day 15 total locomotion2.52.74.2-2.1-1.8-1.41.0
Intermittent access total locomotion0.60.71.0-1.0-1.0-0.50.8
Intermittent access standard deviation1.92.03.2-1.8-1.2-1.80.3
Cocaine induced anxiety1.11.33.1-0.4-1.30.51.8
Post-drug Anxiety1.11.22.7-0.5-1.30.41.6
Baseline Anxiety0.50.51.1-0.60.0-1.0-0.7
Lifetime Intake0.00.00.1-0.3-0.1-0.10.2
Incentive Sensitization - Responses0.20.20.4-0.30.2-0.6-0.4
Incentive Sensitization - Breakpoint0.20.20.4-0.40.1-0.6-0.3
Progressive ratio test 1 active lever presses0.20.20.5-0.00.5-0.2-0.7
Progressive ratio test 1 breakpoint0.20.20.50.00.6-0.1-0.7
Progressive ratio test 1 inactive lever presses0.00.00.0-0.2-0.10.10.1
Progressive ratio test 2 active lever presses0.20.20.5-0.50.1-0.7-0.4
Progressive ratio test 2 breakpoint0.10.10.2-0.5-0.2-0.5-0.0
Progressive ratio test 2 inactive lever presses0.10.10.3-0.1-0.20.30.5
Total sessions with >9 infusions0.10.10.30.20.10.50.4
Short access day 1 total inactive lever presses0.10.10.2-0.3-0.30.20.4
Short access day 10 total inactive lever presses0.00.00.00.00.2-0.2-0.0
Short access day 1 total infusions0.50.51.3-0.3-0.70.51.1
Short access day 10 total infusions0.10.10.2-0.40.2-0.4-0.5
Short access total infusions0.00.00.10.00.00.30.3
Short access day 1 locomotion0.80.91.4-0.9-1.1-0.11.2
Short access day 10 total locomotion2.52.84.7-2.2-1.6-1.80.6
Short access total locomotion0.50.50.8-0.9-0.8-0.40.7
Compulsive drug intake1.01.01.81.30.81.3-0.1
One hour access (0.3 mA shock)0.10.20.30.30.50.3-0.4
One hour access (shock baseline)0.30.40.6-0.60.2-0.8-0.7
Number of responses in last shaping day0.10.10.1-0.3-0.2-0.10.3
Context. condit. distance diff. score0.20.30.60.00.80.2-0.7
Locomotion velocity, session 11.11.22.7-0.3-1.30.51.6
Locomotion distance, session 12.22.96.4-0.3-1.41.82.5
Locomotion velocity, session 25.16.010.3-2.1-3.00.33.2
Locomotion distance, session 23.34.710.2-0.8-2.61.03.2
Locomotion velocity, session 34.85.69.9-3.1-2.5-2.21.1
Locomotion distance, session 30.20.20.4-0.30.3-0.4-0.6
Stereotopy head waving bouts, day 34.25.07.6-2.7-2.8-1.21.9
Stereotopy head waving duration, day 34.75.68.6-2.9-2.9-1.71.7
Locomotion velocity, session 70.70.71.8-1.4-0.4-1.0-0.1
Locomotion distance, session 70.81.02.2-0.01.0-0.8-1.5
Stereotopy head waving bouts, day 70.60.61.2-0.1-0.61.01.1
Stereotopy head waving duration, day 70.91.12.4-0.3-1.10.81.5
Locomotion velocity, session 81.72.03.8-1.0-1.60.91.9
Locomotion distance, session 80.50.71.4-0.6-0.80.61.2
Degree of sensitization distance0.20.20.40.50.60.3-0.5
Degree of sensitization stereotypy1.51.73.21.61.01.80.0
Condit. Reinf. active minus inactive responses3.33.76.1-2.5-2.2-1.41.4
Condit. Reinf. active-inactive response ratio1.51.62.7-1.5-1.1-1.60.2
Condit. Reinf. active responses3.74.57.0-2.2-2.7-0.52.4
Condit. Reinf. inactive responses2.22.65.8-0.8-1.80.82.4
Incentive salience index mean2.32.84.1-1.8-2.0-0.31.9
Condit. Reinf. lever presses1.92.55.50.2-1.11.92.3
Time in familiar zone, hab. session 11.71.63.0-1.5-1.1-1.70.0
Time in novel zone, hab. session 11.21.12.61.20.61.60.4
Total zone transitions, hab. session 11.72.44.7-1.0-1.90.62.2
Total locomotion distance, hab. session 12.53.67.3-1.2-2.20.92.7
Locomotion velocity, hab. session 12.84.07.4-1.5-2.40.62.7
Time in familiar zone, hab. session 24.34.47.0-2.6-2.0-2.70.5
Time in novel zone, hab. session 23.43.45.42.31.72.3-0.4
Total zone transitions, hab. session 22.32.95.20.6-1.02.32.3
Total locomotion distance, hab. session 22.23.06.4-0.9-2.00.82.5
Locomotion velocity, hab. session 22.73.78.2-0.8-2.21.12.9
Novel to familiar place preference ratio3.53.76.72.41.52.60.1
Novelty place preference2.32.44.81.91.12.20.3
Time in novel zone, NPP test2.42.54.61.91.32.20.1
Total zone transitions, NPP test1.11.63.40.3-1.01.41.9
Total locomotion distance, NPP test1.11.52.90.2-0.81.51.7
Locomotion velocity, NPP test1.21.73.6-0.0-1.11.31.9
Pavlov. Cond. lever latency0.60.71.40.30.5-1.1-1.2
Pavlov. Cond. magazine entry latency2.63.36.4-2.5-1.9-1.51.1
Pavlov. Cond. change in total contacts0.30.30.6-0.8-0.40.10.5
Pavlov. Cond. index score0.81.11.6-1.3-1.10.21.2
Pavlov. Cond. latency score1.11.42.4-1.2-1.20.51.5
Pavlov. Cond. lever contacts0.91.02.1-0.5-0.81.11.4
Pavlov. Cond. magazine entry number0.81.02.11.41.10.5-0.7
Pavlov. Cond. intertrial magazine entries0.40.51.1-0.3-0.0-1.1-0.7
Pavlov. Cond. lever-magazine prob. diff.1.11.42.2-1.5-1.3-0.11.3
Pavlov. Cond. response bias1.21.42.9-1.7-1.3-0.70.9
Bone: apparent density1.72.84.71.0-1.12.12.2
Bone surface2.85.010.10.5-2.02.43.2
Bone volume2.95.010.10.6-2.02.33.2
Bone: connectivity density1.21.93.91.1-0.42.01.5
Bone: cortical apparent density0.70.91.91.40.90.5-0.8
Bone: cortical area0.50.71.81.00.41.30.2
Bone: cortical porosity0.70.71.4-0.5-1.10.11.2
Bone: cortical porosity0.70.81.60.1-0.80.91.3
Bone: cortical thickness0.81.32.41.50.91.4-0.2
Bone: cortical thickness0.50.61.2-0.10.6-1.0-1.1
Bone: cortical tissue density0.50.71.41.20.70.4-0.8
Bone: elastic displacement0.10.20.4-0.0-0.6-0.20.5
Bone: elastic work0.20.30.80.90.40.5-0.3
Bone: endosteal estimation0.10.20.30.40.40.5-0.5
Bone: endosteal perimeter0.30.60.8-0.7-0.90.10.9
Bone: final force0.81.21.91.41.01.3-0.6
Bone: final moment0.61.01.61.30.91.2-0.5
Bone: marrow area0.10.20.30.40.50.5-0.5
Bone: maximum diameter0.81.52.5-1.0-1.60.11.6
Bone: maximum force0.81.31.81.31.21.1-0.9
Bone: maximum moment0.61.11.61.31.11.0-0.8
Bone: minimum diameter0.00.10.2-0.2-0.20.40.2
Bone: periosteal estimation0.20.51.40.70.31.20.1
Bone: periosteal perimeter0.30.40.9-0.2-0.70.61.0
Bone: post-yield work0.40.51.00.31.00.2-1.0
Bone: stiffness1.82.83.81.81.91.7-1.2
Bone: tissue strength1.21.22.21.51.01.2-0.4
Bone: trabecular number1.21.94.3-0.6-1.60.72.1
Bone: trabecular spacing2.53.27.30.11.8-1.6-2.7
Bone: trabecular thickness3.84.68.41.1-1.52.62.9
Bone: trabecular tissue density1.11.62.51.11.60.5-1.5
Breakpoint value in progressive ratio session3.64.06.9-2.6-1.9-2.10.9
Distance traveled before self-admin0.50.50.90.90.50.90.1
Distance traveled after self-admin0.40.40.6-0.6-0.8-0.20.7
Delta time in closed arm before/after self-admin2.52.55.50.51.7-1.0-2.3
Delta time in open arm before/after self-admin0.70.71.41.20.71.0-0.2
Diff in mean of infusions in LGA sessions1.41.52.6-1.6-1.4-0.90.8
Extinction: sum of active levers before priming1.01.02.1-1.3-0.4-1.4-0.1
Active lever presses in extinction session 61.61.52.3-1.4-1.5-0.81.2
Delta distance traveled before/after self-admin1.31.42.2-1.5-1.3-1.00.8
Delta ambulatory time before/after self-admin1.41.52.4-1.5-1.5-0.80.9
Time in closed arm before self-admin1.01.13.11.00.01.80.7
Time in closed arm after self-admin0.00.00.0-0.20.0-0.2-0.2
Time in open arm before self-admin0.40.40.7-0.8-0.5-0.80.2
Time in open arm after self-admin0.60.61.01.00.90.5-0.6
Sum of active levers in priming session hrs 5-60.00.00.00.1-0.00.20.1
Time to tail flick, vehicle, before self-admin0.80.91.6-0.4-1.20.41.3
Time to tail flick, vehicle, after self-admin0.60.61.4-0.60.2-1.2-0.7
Time to tail flick, test, before self-admin0.70.71.5-0.1-0.90.51.2
Time to tail flick, test, after self-admin0.40.40.8-0.5-0.90.00.6
Delta time to tail flick, vehicle, before/after SA1.31.22.30.21.3-0.9-1.5
Delta time to tail flick, test, before/after SA0.50.40.8-0.7-0.1-0.9-0.6
Ambulatory time before self-admin0.40.40.80.90.50.7-0.1
Ambulatory time after self-admin0.20.20.4-0.5-0.6-0.10.5
Total heroin consumption1.31.52.1-1.5-1.4-0.91.0
Area under the delay curve1.51.62.61.61.31.2-0.9
Delay disc. indifference point, 0s delay6.26.713.63.21.63.70.5
Delay disc. indifference point, 16s delay0.10.10.20.40.20.3-0.3
Delay disc. indifference point, 2s delay3.94.36.72.62.02.4-0.9
Delay disc. indifference point, 24s delay0.70.71.21.01.10.3-0.8
Delay disc. indifference point, 4s delay0.70.71.31.00.61.2-0.3
Delay disc. indifference point, 8s delay1.01.11.71.01.20.2-1.3
Delay discount exponential model param1.41.52.3-1.5-1.3-1.01.0
Delay discount hyperbolic model param2.02.13.3-1.8-1.5-1.31.1
Fecal boli incidents, locomotor time 11.01.01.61.21.10.6-1.0
Change in fecal boli incidents, locomotor task0.10.10.2-0.2-0.1-0.00.5
Time >=10cm from walls, locomotor time 10.90.91.51.10.21.20.8
Bouts of movement, locomotor time 10.20.20.5-0.7-0.1-0.5-0.1
Total resting periods, locomotor time 10.20.20.6-0.8-0.4-0.50.1
Rest time, locomotor task time 10.40.40.8-0.9-0.6-0.00.6
Distance moved, locomotor task time 10.80.91.61.30.41.20.6
Vertical activity count, locomotor time 10.50.50.90.70.7-0.4-1.0
Time >=10cm from walls, locomotor time 21.21.32.21.31.50.3-1.1
Bouts of movement, locomotor time 21.01.12.2-0.5-1.30.51.5
Total resting periods, locomotor time 21.11.12.2-0.5-1.30.61.5
Rest time, locomotor task time 20.70.81.3-0.7-1.2-0.01.1
Distance moved, locomotor task time 20.70.81.40.81.20.3-0.9
Vertical activity count, locomotor time 21.11.22.50.61.3-0.3-1.6
Weight adjusted by age1.01.12.20.41.2-0.6-1.5
Seeking ratio, delayed vs. immediate footshock3.23.76.0-2.1-2.4-1.21.7
Locomotion in novel chamber0.30.30.9-0.4-0.3-0.9-0.4
Locomotion in novel chamber post-restriction0.80.91.8-1.4-0.7-1.2-0.1
Progressive ratio0.10.10.20.10.40.1-0.5
Food seeking constrained by brief footshock0.40.51.0-0.8-0.70.31.0
Seeking ratio, punishment vs. effort0.30.40.9-0.5-0.70.31.0
Run reversals in cocaine runway, females0.30.30.5-0.7-0.6-0.20.5
Run reversals in cocaine runway, males1.21.22.2-1.1-1.5-0.51.0
Latency to leave start box in cocaine runway1.21.33.0-0.2-1.50.41.7
Latency to leave start box in cocaine runway, F1.71.83.11.0-0.81.61.7
Latency to leave start box in cocaine runway, M2.32.24.1-2.0-1.0-2.0-0.1
Cd content in liver0.20.20.50.70.30.50.0
Co content in liver0.40.51.0-1.0-0.7-0.70.3
Cu content in liver0.50.61.40.4-0.21.20.9
Fe content in liver0.20.20.6-0.80.1-0.4-0.2
K content in liver0.70.71.3-0.2-0.61.11.1
Mg content in liver0.70.71.30.0-0.61.11.2
Mn content in liver2.42.75.5-1.0-1.91.02.4
Na content in liver1.01.03.10.70.31.80.7
Rb content in liver0.70.92.30.8-0.01.50.8
Se content in liver0.30.40.9-0.9-0.6-0.00.5
Sr content in liver0.50.50.9-0.30.4-0.9-0.9
Zn content in liver2.02.25.4-1.5-0.5-2.3-0.8