Pde7a

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000013048 0.09 0.05 1.6e-10 0.07 0.07 0.08 0.07 7.7e-08 1.1e-08 8.8e-09 1.0e-08
2 Brain gene expression ENSRNOG00000013048 0.03 0.02 5.8e-03 0.03 0.02 0.02 0.03 3.9e-04 5.1e-03 4.2e-03 1.0e-03
3 Liver gene expression ENSRNOG00000013048 0.13 0.07 5.3e-13 0.07 0.09 0.09 0.09 2.2e-08 8.4e-10 1.1e-09 1.2e-09
4 NAcc gene expression ENSRNOG00000013048 0.05 0.03 9.3e-03 0 0.01 0 0.01 2.9e-01 3.2e-02 1.5e-01 6.5e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail0.93.05.6-1.1-2.4-1.6-1.6
BMI without tail2.55.17.4-1.6-2.5-2.1-2.7
Body weight1.25.39.4-2.1-3.1-2.5-0.9
Epididymis fat weight2.25.17.4-2.4-2.7-2.70.1
Glucose0.20.41.30.0-1.1-0.4-0.2
Heart weight0.10.10.4-0.10.6-0.00.2
Left kidney weight0.00.10.3-0.50.0-0.5-0.1
Right kidney weight0.30.81.4-0.7-1.1-1.20.4
Tail length1.03.14.3-2.0-1.8-2.1-0.8
Length with tail0.93.14.2-2.1-1.8-2.00.9
Length without tail0.92.07.3-0.5-0.5-0.52.7
Liver weight, left1.72.75.1-1.2-2.3-1.7-1.2
Liver weight, right1.11.82.9-0.6-1.7-1.0-1.7
Parametrial fat weight3.36.59.4-2.7-3.0-3.1-0.5
Retroperitoneal fat weight1.54.87.7-2.0-2.8-2.5-1.2
Intraocular pressure0.50.71.1-0.5-1.0-0.8-0.8
Extensor digitorum longus weight4.216.927.2-3.4-5.2-4.5-2.9
Soleus weight0.51.32.2-1.2-1.2-1.50.4
Tibialis anterior weight4.816.525.2-3.5-5.0-4.6-2.7
Tibia length0.10.41.10.5-0.30.31.0
Number of licking bursts1.21.52.1-1.3-1.5-1.4-0.1
Food consumed during 24 hour testing period3.23.95.8-1.7-2.4-2.0-1.7
Times rat made contact with spout3.33.85.3-2.3-2.2-2.20.1
Mean time between licks in bursts1.31.85.6-0.7-0.8-0.8-2.4
Mean num. licks in bursts0.00.10.10.10.20.30.3
Std. dev. time between licks in bursts0.20.20.30.40.60.40.4
Water consumed over 24 hours0.00.00.00.10.00.2-0.1
Indifference point 0 sec0.61.01.9-1.4-0.6-1.20.4
Indifference point AUC0.10.10.30.5-0.30.1-0.3
Indifference point function ln k1.92.64.2-2.1-1.0-1.7-1.6
Indifference point function log k1.92.64.2-2.1-1.0-1.7-1.6
Delay discounting total patch changes 0 sec1.11.83.4-1.8-1.1-1.70.0
Delay discounting total patch changes 12 sec0.20.20.8-0.1-0.2-0.10.9
Delay discounting total patch changes 18 sec0.10.10.4-0.1-0.6-0.40.2
Delay discounting total patch changes 24 sec0.00.00.10.10.20.2-0.3
Delay discounting total patch changes 6 sec0.81.21.4-1.2-1.0-1.2-0.8
Delay discounting time to switch 0 sec0.00.00.00.20.00.20.1
Delay discounting water rate 0 sec0.20.30.4-0.7-0.3-0.7-0.5
Delay discounting water rate 12 sec0.20.30.60.60.60.7-0.1
Delay discounting water rate 18 sec0.10.10.30.10.50.4-0.3
Delay discounting water rate 24 sec0.10.10.20.50.50.4-0.1
Delay discounting water rate 6 sec1.01.42.5-1.6-0.9-1.3-0.7
Locomotor activity0.30.51.1-0.6-1.0-0.7-0.3
Locomotor testing distance0.40.71.6-0.6-1.3-0.90.2
Locomotor testing rearing0.20.30.90.40.10.41.0
Light reinforcement 10.61.11.5-1.2-1.2-1.20.3
Light reinforcement 25.16.811.1-3.3-2.4-3.10.7
Reaction time number correct1.21.83.01.01.21.21.7
Reaction time mean minus median6.07.912.5-2.4-2.6-2.6-3.5
Reaction time mean minus median AUC5.77.312.5-2.1-2.6-2.4-3.5
Reaction time num false alarms3.14.26.41.91.72.12.5
Reaction time num false alarms AUC2.63.77.21.51.51.72.7
Reaction time trials correct on left1.21.83.01.01.21.21.7
Reaction time trials on left1.21.83.01.01.21.31.7
Reaction time mean1.41.94.6-0.8-1.2-0.9-2.1
Reaction time mean AUC1.21.64.6-0.7-0.9-0.7-2.1
Median of all reaction times0.40.62.0-0.1-0.5-0.2-1.4
Reaction time omissions1.01.32.3-0.6-1.5-1.0-1.3
Reaction time false alarm rate0.81.12.80.80.60.81.7
Reaction time premature initiation rate0.20.30.8-0.00.50.2-0.9
Reaction time premature initiations0.20.30.80.30.90.6-0.2
Std. dev. reaction times3.34.57.6-1.5-2.1-1.8-2.8
Reaction time trials completed1.21.83.01.01.21.31.7
Reaction time trials AUC1.11.63.10.91.11.11.8
Social response proportion0.10.10.20.40.10.3-0.0
Social responses0.40.50.8-0.9-0.8-0.8-0.1
Social time1.31.62.71.60.91.6-0.7
Conditioned locomotion1.82.12.81.71.51.60.9
Cocaine response after cond. corrected0.10.10.3-0.60.4-0.10.1
Cocaine response after cond. not corrected0.10.10.4-0.60.4-0.10.2
Cocaine response before conditioning0.20.30.40.60.50.60.0
Saline control response0.30.40.9-0.5-1.0-0.7-0.4
Condit. Reinf. active minus inactive responses0.20.30.90.3-0.3-0.00.9
Condit. Reinf. active-inactive response ratio0.10.10.40.3-0.2-0.00.7
Condit. Reinf. active responses0.20.30.90.5-0.00.40.9
Condit. Reinf. inactive responses0.10.20.6-0.0-0.10.20.8
Condit. Reinf. lever presses0.10.20.30.40.40.50.4
Condit. Reinf. lever reinforcers received0.20.30.80.5-0.00.40.9
Pavlov. Cond. lever latency0.50.72.50.40.10.2-1.6
Pavlov. Cond. magazine entry latency0.20.20.3-0.6-0.2-0.4-0.4
Pavlov. Cond. change in total contacts0.50.72.40.40.20.41.6
Pavlov. Cond. index score0.20.20.4-0.5-0.3-0.40.6
Pavlov. Cond. latency score0.20.20.4-0.5-0.4-0.40.6
Pavlov. Cond. lever contacts0.50.72.9-0.10.00.11.7
Pavlov. Cond. magazine entry number0.00.00.10.20.20.1-0.3
Pavlov. Cond. intertrial magazine entries0.20.30.50.70.60.60.1
Pavlov. Cond. lever-magazine prob. diff.0.30.40.5-0.7-0.6-0.60.5
Pavlov. Cond. response bias0.30.41.6-0.10.00.01.3
Conditioned reinforcement - actives0.30.30.40.30.60.6-0.6
Conditioned reinforcement - inactives0.80.92.5-1.00.1-0.5-1.6
Conditioned locomotion0.91.11.9-1.4-0.9-1.2-0.5
Intermittent access intake day 1-15 change0.90.91.6-0.8-1.3-1.0-0.6
Intermittent access intake escalation0.90.91.8-0.4-1.1-0.6-1.3
Intermittent access intake escalation 21.21.22.3-0.7-1.5-1.0-0.9
Intermitt. access day 1 inactive lever presses1.71.86.30.40.50.8-2.5
Intermitt. access day 15 inactive lever presses1.61.82.71.30.91.4-1.7
Intermitt. access escalation Index0.20.20.3-0.20.50.2-0.6
Intermittent access day 1 total infusions0.50.61.20.60.50.6-1.1
Intermittent access day 15 total infusions0.80.93.10.60.00.6-1.7
Intermittent access terminal intake (last 3 days)1.51.75.80.4-0.90.0-2.4
Intermittent access total infusions1.31.44.00.80.40.8-2.0
Intermittent access day 1 locomotion0.20.20.3-0.4-0.6-0.5-0.1
Intermittent access day 15 total locomotion1.41.51.9-1.2-1.4-1.3-1.0
Intermittent access total locomotion0.40.40.6-0.4-0.8-0.5-0.8
Intermittent access standard deviation1.51.62.9-0.8-1.4-0.9-1.7
Cocaine induced anxiety0.60.71.21.10.20.81.0
Post-drug Anxiety0.50.61.11.00.60.80.4
Baseline Anxiety0.60.61.1-1.10.0-0.7-0.9
Lifetime Intake1.21.33.01.00.51.0-1.7
Incentive Sensitization - Responses0.40.41.00.40.50.4-1.0
Incentive Sensitization - Breakpoint0.40.41.10.20.40.3-1.1
Progressive ratio test 1 active lever presses0.50.50.9-0.5-0.7-0.5-1.0
Progressive ratio test 1 breakpoint0.50.51.2-0.5-0.7-0.5-1.1
Progressive ratio test 1 inactive lever presses0.80.81.20.61.01.1-0.8
Progressive ratio test 2 active lever presses0.60.60.80.90.60.9-0.8
Progressive ratio test 2 breakpoint0.20.20.80.20.00.2-0.9
Progressive ratio test 2 inactive lever presses1.11.23.60.80.30.8-1.9
Total sessions with >9 infusions0.10.10.4-0.2-0.1-0.20.7
Short access day 1 total inactive lever presses0.60.71.50.31.20.80.6
Short access day 10 total inactive lever presses0.10.10.20.20.40.5-0.3
Short access day 1 total infusions0.80.81.4-0.8-1.2-1.0-0.4
Short access day 10 total infusions0.80.92.80.40.30.6-1.7
Short access total infusions0.20.20.60.30.00.3-0.8
Short access day 1 locomotion0.40.40.8-0.3-0.6-0.70.9
Short access day 10 total locomotion0.10.20.30.6-0.40.3-0.2
Short access total locomotion0.10.10.4-0.0-0.6-0.20.3
Compulsive drug intake1.41.42.60.51.31.1-1.6
One hour access (0.3 mA shock)1.41.65.8-0.00.70.5-2.4
One hour access (shock baseline)0.40.40.90.40.50.6-1.0
Number of responses in last shaping day1.41.42.4-1.1-1.6-1.40.0
Context. condit. distance diff. score0.60.71.8-0.4-0.6-0.61.4
Locomotion velocity, session 10.20.30.4-0.4-0.6-0.6-0.4
Locomotion distance, session 10.30.40.91.00.10.6-0.5
Locomotion velocity, session 21.61.92.5-0.9-1.5-1.3-1.6
Locomotion distance, session 20.30.51.41.20.10.8-0.2
Locomotion velocity, session 30.70.91.7-0.7-1.3-1.0-0.4
Locomotion distance, session 30.70.71.2-0.8-1.1-1.0-0.2
Stereotopy head waving bouts, day 30.20.20.50.10.50.30.7
Stereotopy head waving duration, day 30.40.50.80.50.90.80.0
Locomotion velocity, session 72.52.73.11.51.61.81.7
Locomotion distance, session 72.02.63.81.21.91.71.5
Stereotopy head waving bouts, day 70.30.30.5-0.5-0.7-0.70.1
Stereotopy head waving duration, day 70.40.50.7-0.7-0.8-0.9-0.4
Locomotion velocity, session 80.60.71.6-0.4-1.3-0.9-0.3
Locomotion distance, session 80.60.92.1-0.5-1.5-1.00.1
Degree of sensitization distance3.83.86.61.72.62.30.6
Degree of sensitization stereotypy1.92.13.5-1.3-1.9-1.8-0.2
Condit. Reinf. active minus inactive responses0.20.30.40.7-0.10.4-0.7
Condit. Reinf. active-inactive response ratio0.20.20.50.40.30.4-0.7
Condit. Reinf. active responses0.20.20.50.5-0.40.1-0.7
Condit. Reinf. inactive responses0.30.40.7-0.2-0.8-0.5-0.6
Incentive salience index mean0.20.20.60.1-0.5-0.1-0.8
Condit. Reinf. lever presses0.60.81.8-0.6-0.6-0.7-1.3
Time in familiar zone, hab. session 10.30.20.7-0.10.40.3-0.8
Time in novel zone, hab. session 10.20.20.3-0.3-0.6-0.60.5
Total zone transitions, hab. session 10.00.00.00.2-0.00.00.2
Total locomotion distance, hab. session 10.10.10.40.2-0.2-0.00.6
Locomotion velocity, hab. session 10.10.10.2-0.2-0.4-0.30.4
Time in familiar zone, hab. session 20.20.20.5-0.00.70.4-0.3
Time in novel zone, hab. session 20.30.30.70.80.40.60.1
Total zone transitions, hab. session 20.20.20.4-0.3-0.7-0.5-0.0
Total locomotion distance, hab. session 20.00.00.10.1-0.1-0.00.4
Locomotion velocity, hab. session 20.10.10.4-0.1-0.2-0.30.6
Novel to familiar place preference ratio2.32.43.41.81.61.70.9
Novelty place preference1.92.02.71.71.51.50.9
Time in novel zone, NPP test1.61.62.31.51.31.40.8
Total zone transitions, NPP test0.20.20.70.80.10.5-0.1
Total locomotion distance, NPP test0.10.10.20.50.00.30.4
Locomotion velocity, NPP test0.40.60.91.00.60.80.7
Pavlov. Cond. lever latency0.70.82.90.50.20.41.7
Pavlov. Cond. magazine entry latency1.72.28.5-0.4-0.1-0.4-2.9
Pavlov. Cond. change in total contacts2.72.95.3-1.3-1.5-1.5-2.3
Pavlov. Cond. index score2.43.08.2-1.2-1.0-1.2-2.9
Pavlov. Cond. latency score1.62.16.4-0.8-0.8-0.9-2.5
Pavlov. Cond. lever contacts2.02.46.8-1.1-0.7-1.0-2.6
Pavlov. Cond. magazine entry number3.13.99.01.61.21.63.0
Pavlov. Cond. intertrial magazine entries0.70.82.50.70.50.51.6
Pavlov. Cond. lever-magazine prob. diff.3.34.19.8-1.5-1.3-1.6-3.1
Pavlov. Cond. response bias3.64.411.3-1.5-1.2-1.6-3.4
Bone: apparent density1.32.24.01.42.01.70.3
Bone surface0.20.30.50.60.70.7-0.0
Bone volume0.20.30.60.40.80.60.0
Bone: connectivity density1.82.95.11.62.31.9-0.7
Bone: cortical apparent density1.41.82.7-1.4-1.5-1.7-0.4
Bone: cortical area0.91.45.0-0.2-0.6-0.32.2
Bone: cortical porosity1.01.12.01.40.71.20.7
Bone: cortical porosity0.70.81.31.10.40.91.0
Bone: cortical thickness1.93.111.00.90.30.83.3
Bone: cortical thickness0.20.20.50.1-0.6-0.20.7
Bone: cortical tissue density1.62.13.2-1.6-1.5-1.8-0.7
Bone: elastic displacement2.02.32.71.51.61.51.4
Bone: elastic work0.50.71.00.61.00.70.9
Bone: endosteal estimation0.91.82.9-1.0-1.7-1.2-1.4
Bone: endosteal perimeter1.42.94.1-2.0-2.0-1.90.2
Bone: final force0.30.41.4-0.0-1.2-0.40.4
Bone: final moment0.30.41.2-0.0-1.1-0.30.6
Bone: marrow area0.91.92.8-1.0-1.7-1.2-1.6
Bone: maximum diameter0.61.11.8-0.9-1.0-0.81.4
Bone: maximum force0.30.51.6-0.2-1.3-0.5-0.1
Bone: maximum moment0.20.41.4-0.1-1.2-0.40.1
Bone: minimum diameter0.30.60.9-1.0-0.9-0.80.4
Bone: periosteal estimation0.40.91.9-0.8-1.4-0.90.4
Bone: periosteal perimeter1.11.92.8-1.3-1.3-1.11.7
Bone: post-yield work1.01.43.9-0.2-1.1-0.4-2.0
Bone: stiffness0.50.82.5-0.3-1.6-0.7-0.3
Bone: tissue strength0.20.20.40.60.10.5-0.3
Bone: trabecular number2.13.34.62.02.12.1-0.0
Bone: trabecular spacing0.20.20.4-0.1-0.6-0.40.6
Bone: trabecular thickness0.50.61.80.21.30.7-0.4
Bone: trabecular tissue density1.72.43.8-1.7-2.0-1.60.4
Breakpoint value in progressive ratio session0.30.41.5-0.20.0-0.1-1.2
Distance traveled before self-admin2.52.74.2-1.7-2.0-1.8-0.6
Distance traveled after self-admin4.34.87.0-2.6-2.3-2.5-0.7
Delta time in closed arm before/after self-admin0.70.71.11.10.40.8-0.9
Delta time in open arm before/after self-admin0.40.41.1-0.4-0.2-0.31.1
Diff in mean of infusions in LGA sessions0.30.30.50.40.70.5-0.4
Extinction: sum of active levers before priming0.30.30.70.40.40.40.8
Active lever presses in extinction session 60.30.30.50.7-0.30.7-0.5
Delta distance traveled before/after self-admin0.10.20.4-0.3-0.1-0.30.6
Delta ambulatory time before/after self-admin0.30.31.2-0.00.4-0.01.1
Time in closed arm before self-admin0.10.10.2-0.50.2-0.1-0.5
Time in closed arm after self-admin0.90.93.3-0.30.3-0.0-1.8
Time in open arm before self-admin0.30.30.7-0.4-0.8-0.70.2
Time in open arm after self-admin0.80.91.3-0.4-1.2-0.81.2
Sum of active levers in priming session hrs 5-60.70.70.7-0.8-0.8-0.8-0.8
Time to tail flick, vehicle, before self-admin0.40.40.50.7-0.20.60.7
Time to tail flick, vehicle, after self-admin5.96.48.32.92.42.81.9
Time to tail flick, test, before self-admin0.90.91.4-1.0-0.8-1.2-0.6
Time to tail flick, test, after self-admin1.31.42.00.91.41.21.1
Delta time to tail flick, vehicle, before/after SA6.46.29.42.53.12.71.2
Delta time to tail flick, test, before/after SA0.70.71.30.50.70.81.1
Ambulatory time before self-admin2.82.94.1-2.0-1.9-1.9-0.6
Ambulatory time after self-admin1.92.13.8-1.9-1.4-1.7-0.0
Total heroin consumption0.20.20.6-0.4-0.8-0.4-0.4
Area under the delay curve0.10.10.20.0-0.4-0.4-0.2
Delay disc. indifference point, 0s delay0.40.41.50.5-0.30.11.2
Delay disc. indifference point, 16s delay0.30.30.60.80.40.5-0.1
Delay disc. indifference point, 2s delay0.20.20.3-0.4-0.4-0.50.5
Delay disc. indifference point, 24s delay1.21.11.71.11.31.10.7
Delay disc. indifference point, 4s delay1.51.62.5-0.8-1.3-1.2-1.6
Delay disc. indifference point, 8s delay0.30.30.6-0.3-0.5-0.5-0.7
Delay discount exponential model param0.10.10.20.10.40.40.2
Delay discount hyperbolic model param0.10.20.30.20.50.50.3
Fecal boli incidents, locomotor time 11.71.83.51.90.71.6-1.0
Change in fecal boli incidents, locomotor task2.92.89.60.41.00.73.1
Time >=10cm from walls, locomotor time 10.30.30.50.40.60.70.6
Bouts of movement, locomotor time 10.20.30.50.40.60.3-0.7
Total resting periods, locomotor time 10.30.30.50.30.70.3-0.7
Rest time, locomotor task time 11.01.13.60.6-0.40.2-1.9
Distance moved, locomotor task time 11.11.22.7-1.6-0.2-0.81.2
Vertical activity count, locomotor time 11.92.05.1-2.3-0.7-1.50.4
Time >=10cm from walls, locomotor time 21.41.53.31.10.71.01.8
Bouts of movement, locomotor time 20.30.30.50.70.60.4-0.4
Total resting periods, locomotor time 20.30.30.50.60.50.4-0.7
Rest time, locomotor task time 21.61.95.41.10.50.8-2.3
Distance moved, locomotor task time 20.40.41.3-0.50.40.01.2
Vertical activity count, locomotor time 21.11.21.9-1.4-0.7-1.0-1.2
Weight adjusted by age0.70.81.3-1.2-0.7-0.90.6
Seeking ratio, delayed vs. immediate footshock2.22.54.50.72.11.51.7
Locomotion in novel chamber0.30.40.8-0.2-0.7-0.50.9
Locomotion in novel chamber post-restriction1.01.22.01.40.91.2-0.7
Progressive ratio0.70.81.41.00.81.2-0.2
Food seeking constrained by brief footshock0.30.30.80.10.50.4-0.9
Seeking ratio, punishment vs. effort0.20.30.6-0.8-0.1-0.6-0.3
Run reversals in cocaine runway, females5.35.37.4-2.7-2.4-2.6-1.1
Run reversals in cocaine runway, males1.31.24.5-0.1-0.6-0.3-2.1
Latency to leave start box in cocaine runway0.60.60.9-1.0-0.3-0.7-0.9
Latency to leave start box in cocaine runway, F0.40.41.4-0.4-0.2-0.3-1.2
Latency to leave start box in cocaine runway, M1.51.52.6-1.6-1.0-1.4-0.4
Cd content in liver0.20.20.6-0.0-0.8-0.4-0.2
Co content in liver0.91.11.7-1.2-1.3-1.1-0.5
Cu content in liver0.10.10.20.00.10.10.5
Fe content in liver0.40.51.11.00.40.80.5
K content in liver0.20.20.60.10.80.4-0.0
Mg content in liver0.30.30.90.20.90.50.2
Mn content in liver0.20.20.40.60.40.5-0.1
Na content in liver1.31.42.0-1.4-1.0-1.30.9
Rb content in liver1.72.23.21.81.31.70.8
Se content in liver0.40.50.90.70.50.70.9
Sr content in liver1.21.12.00.61.10.9-1.4
Zn content in liver0.20.30.7-0.30.50.0-0.8