Metap1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 BLA gene expression ENSRNOG00000012947 0.08 0.05 6.0e-03 0.03 0.01 0.01 0.03 9.1e-03 7.4e-02 6.2e-02 1.7e-02
2 Brain gene expression ENSRNOG00000012947 0.04 0.03 3.4e-03 0.01 0.01 0.01 0.01 2.8e-02 4.2e-02 2.4e-02 3.0e-02
3 NAcc gene expression ENSRNOG00000012947 0.08 0.04 3.4e-05 0.06 0.07 0.06 0.06 5.2e-05 1.0e-05 4.1e-05 1.8e-05
4 PL gene expression ENSRNOG00000012947 0.09 0.04 2.4e-05 0.03 0.07 0.06 0.06 1.5e-03 8.7e-06 1.9e-05 1.2e-05

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail3.411.213.0-3.4-3.1-3.3-3.6
BMI without tail5.210.915.3-3.9-3.2-2.2-3.6
Body weight3.815.923.8-4.9-3.5-3.1-4.3
Epididymis fat weight0.51.12.9-1.70.1-0.7-1.0
Glucose0.61.01.6-1.1-0.4-1.3-0.9
Heart weight0.10.20.6-0.80.00.2-0.2
Left kidney weight1.23.65.3-2.3-1.3-2.1-1.7
Right kidney weight1.95.310.4-3.2-1.2-1.9-2.4
Tail length0.41.12.5-1.6-0.8-0.1-1.1
Length with tail0.72.64.6-2.1-1.4-0.8-1.8
Length without tail0.71.62.3-1.0-1.2-1.3-1.5
Liver weight, left0.20.40.8-0.8-0.50.1-0.9
Liver weight, right0.81.33.0-0.9-0.7-0.8-1.7
Parametrial fat weight0.40.71.4-0.7-0.9-0.3-1.2
Retroperitoneal fat weight1.13.66.0-2.4-1.1-1.6-2.1
Intraocular pressure0.30.51.50.20.51.2-0.0
Extensor digitorum longus weight3.614.630.1-5.5-3.4-1.4-3.9
Soleus weight0.30.82.3-1.5-0.60.0-0.8
Tibialis anterior weight4.415.231.0-5.6-3.4-1.9-3.9
Tibia length0.92.53.9-2.0-1.6-0.6-1.8
Number of licking bursts1.51.83.0-1.3-0.5-1.7-1.5
Food consumed during 24 hour testing period1.11.33.0-1.7-0.1-1.3-0.7
Times rat made contact with spout0.60.72.4-0.5-0.1-1.5-0.5
Mean time between licks in bursts0.10.20.30.3-0.4-0.5-0.4
Mean num. licks in bursts0.40.50.90.90.20.61.0
Std. dev. time between licks in bursts0.91.01.91.01.4-0.70.8
Water consumed over 24 hours1.01.22.9-1.7-0.4-1.0-0.8
Indifference point 0 sec0.71.22.91.70.90.11.0
Indifference point AUC1.61.82.6-1.2-1.4-1.1-1.6
Indifference point function ln k0.40.61.20.61.1-0.10.9
Indifference point function log k0.40.61.20.61.1-0.10.9
Delay discounting total patch changes 0 sec0.60.92.31.50.8-0.10.8
Delay discounting total patch changes 12 sec0.30.41.20.2-0.4-1.1-0.6
Delay discounting total patch changes 18 sec0.30.41.10.4-0.2-1.1-0.5
Delay discounting total patch changes 24 sec0.00.00.1-0.20.2-0.2-0.3
Delay discounting total patch changes 6 sec1.62.44.60.2-1.6-2.1-1.5
Delay discounting time to switch 0 sec0.60.91.40.70.91.21.0
Delay discounting water rate 0 sec1.01.62.3-0.7-1.5-1.2-1.4
Delay discounting water rate 12 sec1.21.92.7-1.7-1.1-1.2-1.4
Delay discounting water rate 18 sec3.85.06.4-1.8-2.1-2.4-2.5
Delay discounting water rate 24 sec1.82.53.8-1.3-1.2-1.9-1.7
Delay discounting water rate 6 sec2.43.56.6-1.9-1.1-2.6-1.7
Locomotor activity0.10.10.20.30.4-0.40.4
Locomotor testing distance0.20.30.50.40.6-0.30.7
Locomotor testing rearing1.11.76.60.4-0.0-2.6-0.2
Light reinforcement 10.40.61.5-0.8-0.3-1.2-0.5
Light reinforcement 20.00.10.20.10.4-0.00.2
Reaction time number correct0.20.30.6-0.8-0.0-0.6-0.3
Reaction time mean minus median0.70.92.30.80.41.50.6
Reaction time mean minus median AUC0.60.81.41.00.31.20.7
Reaction time num false alarms2.63.65.40.52.32.22.0
Reaction time num false alarms AUC1.92.75.30.11.72.31.6
Reaction time trials correct on left0.20.30.6-0.8-0.0-0.6-0.3
Reaction time trials on left0.10.20.5-0.70.0-0.5-0.2
Reaction time mean0.40.61.00.9-0.11.00.8
Reaction time mean AUC0.40.61.00.8-0.01.00.8
Median of all reaction times0.10.20.20.4-0.50.40.4
Reaction time omissions0.81.03.30.20.31.80.8
Reaction time false alarm rate1.52.24.30.51.52.11.4
Reaction time premature initiation rate0.10.10.4-0.70.00.2-0.3
Reaction time premature initiations0.30.41.5-1.20.10.1-0.4
Std. dev. reaction times0.91.22.71.10.41.60.8
Reaction time trials completed0.10.20.5-0.70.0-0.5-0.2
Reaction time trials AUC0.20.30.7-0.8-0.2-0.6-0.4
Social response proportion0.60.71.20.31.11.00.8
Social responses0.50.71.0-0.5-0.9-1.0-0.9
Social time0.40.51.00.9-0.41.00.2
Conditioned locomotion1.62.03.81.20.71.91.4
Cocaine response after cond. corrected0.00.00.1-0.00.20.30.0
Cocaine response after cond. not corrected0.30.30.40.60.50.30.6
Cocaine response before conditioning0.30.30.50.70.6-0.00.7
Saline control response2.12.84.21.11.72.01.8
Condit. Reinf. active minus inactive responses1.51.93.2-1.3-1.5-0.7-1.8
Condit. Reinf. active-inactive response ratio3.53.65.7-1.4-2.3-1.3-2.4
Condit. Reinf. active responses1.11.52.3-1.3-1.1-0.8-1.5
Condit. Reinf. inactive responses0.10.10.3-0.20.6-0.10.1
Condit. Reinf. lever presses0.60.81.4-0.5-1.2-0.9-1.0
Condit. Reinf. lever reinforcers received0.91.31.8-1.3-1.0-0.8-1.3
Pavlov. Cond. lever latency0.81.01.60.91.00.91.3
Pavlov. Cond. magazine entry latency0.20.20.40.40.20.60.3
Pavlov. Cond. change in total contacts0.40.50.7-0.4-0.7-0.8-0.8
Pavlov. Cond. index score0.30.40.8-0.4-0.9-0.1-0.9
Pavlov. Cond. latency score0.20.20.4-0.0-0.6-0.0-0.6
Pavlov. Cond. lever contacts1.82.63.7-1.6-1.6-1.2-1.9
Pavlov. Cond. magazine entry number0.10.20.40.20.6-0.30.3
Pavlov. Cond. intertrial magazine entries1.11.41.8-1.1-1.1-1.4-1.2
Pavlov. Cond. lever-magazine prob. diff.0.40.50.9-0.4-1.0-0.1-0.9
Pavlov. Cond. response bias1.21.62.3-1.5-1.3-0.6-1.5
Conditioned reinforcement - actives1.00.91.70.71.11.30.6
Conditioned reinforcement - inactives2.32.63.41.51.41.71.9
Conditioned locomotion1.21.52.81.71.01.20.9
Intermittent access intake day 1-15 change0.00.00.00.10.2-0.1-0.1
Intermittent access intake escalation0.00.00.1-0.1-0.1-0.1-0.3
Intermittent access intake escalation 20.80.81.5-0.8-0.7-0.7-1.2
Intermitt. access day 1 inactive lever presses3.33.65.62.41.70.92.2
Intermitt. access day 15 inactive lever presses0.50.51.10.20.80.61.1
Intermitt. access escalation Index0.40.41.10.20.21.10.6
Intermittent access day 1 total infusions0.50.61.1-0.9-0.0-1.0-0.6
Intermittent access day 15 total infusions0.60.71.3-0.8-0.1-1.1-0.9
Intermittent access terminal intake (last 3 days)0.90.91.6-1.00.0-1.3-1.0
Intermittent access total infusions1.01.22.3-1.20.0-1.5-0.9
Intermittent access day 1 locomotion0.50.60.8-0.9-0.3-0.8-0.8
Intermittent access day 15 total locomotion0.10.10.30.1-0.3-0.2-0.6
Intermittent access total locomotion1.01.11.7-1.0-0.9-1.0-1.3
Intermittent access standard deviation1.31.32.2-1.1-1.1-0.9-1.5
Cocaine induced anxiety0.60.71.01.00.70.80.8
Post-drug Anxiety0.10.10.20.50.2-0.40.4
Baseline Anxiety0.90.92.7-0.2-0.8-1.7-0.5
Lifetime Intake0.40.50.8-0.80.5-0.9-0.4
Incentive Sensitization - Responses0.70.71.4-0.5-1.20.4-1.0
Incentive Sensitization - Breakpoint0.90.91.8-0.6-1.30.2-1.1
Progressive ratio test 1 active lever presses0.30.40.5-0.70.7-0.6-0.1
Progressive ratio test 1 breakpoint0.40.40.6-0.80.5-0.8-0.3
Progressive ratio test 1 inactive lever presses2.22.43.81.71.41.02.0
Progressive ratio test 2 active lever presses1.92.13.2-1.6-1.1-1.2-1.8
Progressive ratio test 2 breakpoint2.22.43.2-1.8-1.2-1.4-1.8
Progressive ratio test 2 inactive lever presses0.10.10.4-0.60.20.2-0.2
Total sessions with >9 infusions1.01.13.3-0.11.80.61.0
Short access day 1 total inactive lever presses0.91.01.91.01.4-0.01.1
Short access day 10 total inactive lever presses4.95.38.02.62.01.72.8
Short access day 1 total infusions1.31.43.30.81.80.81.0
Short access day 10 total infusions0.70.81.80.61.30.21.0
Short access total infusions0.50.62.0-0.21.40.00.6
Short access day 1 locomotion0.40.41.20.51.1-0.00.3
Short access day 10 total locomotion0.10.10.30.1-0.1-0.6-0.3
Short access total locomotion0.10.10.30.40.5-0.30.1
Compulsive drug intake0.40.41.30.2-1.1-0.3-0.3
One hour access (0.3 mA shock)1.61.82.6-0.9-1.5-1.3-1.6
One hour access (shock baseline)0.20.20.6-0.30.2-0.8-0.5
Number of responses in last shaping day0.50.51.3-0.41.20.50.4
Context. condit. distance diff. score0.40.50.80.9-0.5-0.9-0.4
Locomotion velocity, session 10.50.51.6-0.41.30.10.5
Locomotion distance, session 10.91.13.6-0.41.9-0.30.8
Locomotion velocity, session 20.70.81.90.51.40.11.1
Locomotion distance, session 23.24.510.30.63.20.92.6
Locomotion velocity, session 30.10.20.3-0.50.40.50.0
Locomotion distance, session 30.00.00.10.10.3-0.00.3
Stereotopy head waving bouts, day 30.30.31.1-1.1-0.00.3-0.3
Stereotopy head waving duration, day 31.31.63.4-1.8-0.9-0.4-1.4
Locomotion velocity, session 70.40.41.0-0.70.3-1.0-0.3
Locomotion distance, session 70.50.61.80.60.4-1.40.1
Stereotopy head waving bouts, day 71.11.23.70.20.71.90.8
Stereotopy head waving duration, day 71.82.25.9-0.01.32.41.2
Locomotion velocity, session 80.40.51.20.61.10.00.8
Locomotion distance, session 80.81.22.80.71.7-0.71.0
Degree of sensitization distance0.70.72.30.3-0.4-1.5-0.6
Degree of sensitization stereotypy1.61.84.80.40.82.21.2
Condit. Reinf. active minus inactive responses0.60.71.3-1.1-0.1-1.1-0.6
Condit. Reinf. active-inactive response ratio4.04.36.0-2.4-1.3-2.2-2.1
Condit. Reinf. active responses0.50.71.20.41.10.21.1
Condit. Reinf. inactive responses3.33.95.41.91.42.12.3
Incentive salience index mean0.50.71.1-0.9-0.4-1.1-0.8
Condit. Reinf. lever presses0.20.20.4-0.4-0.60.0-0.6
Time in familiar zone, hab. session 10.20.20.50.10.60.70.0
Time in novel zone, hab. session 10.00.00.0-0.2-0.20.0-0.0
Total zone transitions, hab. session 11.11.53.1-0.21.81.01.4
Total locomotion distance, hab. session 10.50.71.70.41.30.50.8
Locomotion velocity, hab. session 10.20.30.70.30.8-0.00.5
Time in familiar zone, hab. session 21.41.52.4-1.0-1.5-0.8-1.3
Time in novel zone, hab. session 21.61.62.51.11.60.71.4
Total zone transitions, hab. session 20.30.41.0-0.41.00.20.7
Total locomotion distance, hab. session 20.10.10.4-0.10.3-0.60.2
Locomotion velocity, hab. session 20.10.20.30.30.5-0.40.4
Novel to familiar place preference ratio0.30.30.70.10.9-0.70.4
Novelty place preference0.40.40.80.10.9-0.90.4
Time in novel zone, NPP test0.40.40.90.10.7-0.90.4
Total zone transitions, NPP test0.30.41.3-1.20.3-0.6-0.0
Total locomotion distance, NPP test0.30.51.3-0.3-0.3-1.2-0.6
Locomotion velocity, NPP test0.60.82.1-0.6-0.4-1.4-0.8
Pavlov. Cond. lever latency0.30.40.8-0.9-0.3-0.7-0.5
Pavlov. Cond. magazine entry latency0.20.20.40.00.60.60.5
Pavlov. Cond. change in total contacts1.11.21.91.01.10.71.4
Pavlov. Cond. index score0.20.30.60.80.20.40.5
Pavlov. Cond. latency score0.30.40.90.90.40.50.6
Pavlov. Cond. lever contacts0.10.10.20.2-0.50.0-0.3
Pavlov. Cond. magazine entry number0.10.20.3-0.0-0.6-0.4-0.4
Pavlov. Cond. intertrial magazine entries0.10.10.30.3-0.6-0.0-0.3
Pavlov. Cond. lever-magazine prob. diff.0.20.30.60.80.30.20.6
Pavlov. Cond. response bias0.10.10.30.10.30.50.1
Bone: apparent density0.30.51.1-0.4-1.1-0.2-0.8
Bone surface0.20.30.6-0.3-0.80.0-0.6
Bone volume0.30.61.0-0.8-1.00.3-0.8
Bone: connectivity density0.10.20.60.8-0.3-0.10.0
Bone: cortical apparent density0.20.30.5-0.7-0.2-0.6-0.5
Bone: cortical area4.87.310.1-3.0-2.8-1.6-3.2
Bone: cortical porosity0.30.30.4-0.70.50.60.2
Bone: cortical porosity0.20.20.8-0.90.20.2-0.1
Bone: cortical thickness5.59.112.1-3.4-3.0-2.0-3.5
Bone: cortical thickness1.82.23.5-1.9-1.4-0.9-1.5
Bone: cortical tissue density0.20.30.4-0.6-0.2-0.7-0.4
Bone: elastic displacement2.22.43.3-1.7-1.6-0.9-1.8
Bone: elastic work5.47.19.3-2.9-2.6-2.1-3.0
Bone: endosteal estimation0.10.10.30.4-0.50.3-0.1
Bone: endosteal perimeter0.10.30.5-0.5-0.60.3-0.7
Bone: final force1.32.23.2-1.2-1.5-1.3-1.8
Bone: final moment1.42.33.4-1.2-1.6-1.4-1.9
Bone: marrow area0.10.10.30.5-0.50.3-0.1
Bone: maximum diameter0.91.72.4-1.3-1.5-0.6-1.6
Bone: maximum force1.62.85.0-1.3-1.8-1.1-2.2
Bone: maximum moment1.62.84.9-1.2-1.8-1.2-2.2
Bone: minimum diameter2.24.15.3-2.3-2.1-1.2-2.3
Bone: periosteal estimation1.32.73.8-1.6-1.9-0.8-1.9
Bone: periosteal perimeter1.32.13.2-1.8-1.6-0.3-1.7
Bone: post-yield work0.70.91.61.30.81.10.4
Bone: stiffness1.11.72.6-1.3-1.2-1.0-1.6
Bone: tissue strength2.62.53.9-1.2-1.4-1.7-2.0
Bone: trabecular number0.30.51.60.40.01.20.4
Bone: trabecular spacing0.81.02.50.1-1.0-1.6-0.7
Bone: trabecular thickness0.30.40.6-0.70.50.80.4
Bone: trabecular tissue density0.60.91.20.21.11.01.1
Breakpoint value in progressive ratio session1.31.43.4-0.3-0.9-1.8-1.1
Distance traveled before self-admin0.91.02.0-1.0-1.40.4-0.9
Distance traveled after self-admin0.80.91.1-0.8-1.1-0.9-1.0
Delta time in closed arm before/after self-admin0.50.51.30.50.41.10.6
Delta time in open arm before/after self-admin0.80.81.30.21.11.20.7
Diff in mean of infusions in LGA sessions0.80.93.00.5-0.4-1.7-0.3
Extinction: sum of active levers before priming2.52.55.1-1.6-0.4-2.3-1.4
Active lever presses in extinction session 60.10.10.20.30.3-0.50.4
Delta distance traveled before/after self-admin0.40.41.00.40.7-1.00.1
Delta ambulatory time before/after self-admin0.50.51.20.50.8-1.10.1
Time in closed arm before self-admin0.10.10.30.1-0.1-0.5-0.4
Time in closed arm after self-admin0.20.20.60.70.5-0.20.1
Time in open arm before self-admin2.02.13.5-1.9-1.2-1.5-1.2
Time in open arm after self-admin0.30.30.9-0.90.10.5-0.2
Sum of active levers in priming session hrs 5-61.21.23.4-0.0-0.9-1.8-0.9
Time to tail flick, vehicle, before self-admin1.01.11.80.61.40.81.2
Time to tail flick, vehicle, after self-admin0.60.71.4-0.3-1.01.2-0.4
Time to tail flick, test, before self-admin2.72.75.32.30.41.61.6
Time to tail flick, test, after self-admin0.40.41.0-1.0-0.4-0.3-0.6
Delta time to tail flick, vehicle, before/after SA1.31.33.0-1.0-1.70.1-1.1
Delta time to tail flick, test, before/after SA2.21.94.8-2.2-0.7-1.0-1.3
Ambulatory time before self-admin0.60.61.4-0.8-1.20.5-0.6
Ambulatory time after self-admin0.10.10.2-0.0-0.3-0.1-0.5
Total heroin consumption0.20.20.30.1-0.5-0.5-0.5
Area under the delay curve1.41.52.40.91.50.61.5
Delay disc. indifference point, 0s delay0.50.61.11.10.50.80.6
Delay disc. indifference point, 16s delay0.10.10.2-0.20.5-0.20.4
Delay disc. indifference point, 2s delay1.21.42.10.81.01.51.3
Delay disc. indifference point, 24s delay2.01.92.81.51.30.91.7
Delay disc. indifference point, 4s delay0.30.30.60.50.6-0.40.8
Delay disc. indifference point, 8s delay3.13.25.61.02.41.22.2
Delay discount exponential model param1.51.62.7-1.0-1.5-0.5-1.6
Delay discount hyperbolic model param1.51.62.6-1.1-1.4-0.6-1.6
Fecal boli incidents, locomotor time 10.80.91.50.51.21.00.9
Change in fecal boli incidents, locomotor task0.30.31.0-0.3-0.2-1.0-0.1
Time >=10cm from walls, locomotor time 11.71.72.5-0.4-1.6-1.5-1.3
Bouts of movement, locomotor time 10.70.81.2-0.6-1.1-1.0-0.8
Total resting periods, locomotor time 10.30.40.6-0.5-0.6-0.8-0.6
Rest time, locomotor task time 10.60.71.40.80.71.20.5
Distance moved, locomotor task time 10.30.41.1-0.5-0.2-1.0-0.2
Vertical activity count, locomotor time 10.30.30.7-0.4-0.6-0.9-0.3
Time >=10cm from walls, locomotor time 20.30.31.1-1.1-0.20.1-0.4
Bouts of movement, locomotor time 20.60.61.21.10.40.70.8
Total resting periods, locomotor time 20.80.91.91.40.50.70.9
Rest time, locomotor task time 20.60.71.21.10.50.90.8
Distance moved, locomotor task time 20.00.00.1-0.10.30.00.1
Vertical activity count, locomotor time 20.10.10.1-0.3-0.40.1-0.2
Weight adjusted by age1.31.52.61.21.60.31.4
Seeking ratio, delayed vs. immediate footshock2.12.43.81.81.11.12.0
Locomotion in novel chamber0.40.41.51.2-0.5-0.10.1
Locomotion in novel chamber post-restriction0.70.91.51.00.60.81.2
Progressive ratio0.50.51.6-1.2-0.50.3-0.5
Food seeking constrained by brief footshock2.83.54.2-1.7-2.0-1.7-2.0
Seeking ratio, punishment vs. effort0.30.41.40.2-0.3-1.2-0.3
Run reversals in cocaine runway, females0.60.60.90.90.9-0.50.7
Run reversals in cocaine runway, males0.50.51.0-0.00.8-1.00.5
Latency to leave start box in cocaine runway0.40.50.80.80.7-0.30.9
Latency to leave start box in cocaine runway, F0.00.00.10.1-0.0-0.20.2
Latency to leave start box in cocaine runway, M0.70.62.01.40.1-0.70.2
Cd content in liver0.60.61.1-0.3-1.0-0.9-0.8
Co content in liver0.30.41.4-1.20.2-0.2-0.2
Cu content in liver1.01.23.81.90.4-0.60.7
Fe content in liver1.01.22.51.60.40.91.1
K content in liver0.30.31.01.00.20.10.5
Mg content in liver0.30.30.70.80.5-0.10.7
Mn content in liver1.11.32.7-0.8-1.6-1.0-1.0
Na content in liver0.20.20.30.30.60.40.6
Rb content in liver0.10.20.40.40.60.20.3
Se content in liver0.20.20.40.6-0.20.30.6
Sr content in liver0.10.10.50.0-0.00.20.7
Zn content in liver2.12.48.42.90.3-0.80.6