Rbbp6

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression ENSRNOG00000012806 0.05 0.04 1.5e-03 0.03 0.03 0.02 0.03 1.3e-03 6.2e-04 7.7e-03 5.3e-04
2 Liver gene expression ENSRNOG00000012806 0.05 0.04 7.1e-03 0.01 0.01 0.01 0.01 1.0e-02 1.4e-02 5.3e-02 3.7e-02
3 Liver mRNA stability ENSRNOG00000012806 0.03 0.02 5.6e-03 0.03 0.01 0.01 0.02 2.3e-04 3.7e-02 6.9e-03 1.3e-03
4 PL mRNA stability ENSRNOG00000012806 0.13 0.09 8.0e-04 -0 0.03 0.05 0.01 4.5e-01 1.3e-03 1.8e-04 2.9e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail1.65.39.23.01.60.8-3.0
BMI without tail3.47.214.83.82.21.8-2.4
Body weight1.25.08.12.82.62.0-1.1
Epididymis fat weight0.41.02.31.0-0.50.4-1.5
Glucose0.50.81.31.10.4-0.8-1.0
Heart weight1.42.15.4-0.2-1.4-2.3-1.0
Left kidney weight2.26.311.03.32.51.5-2.4
Right kidney weight2.05.78.62.92.31.9-2.3
Tail length0.92.85.62.42.01.2-0.1
Length with tail0.41.53.30.81.81.20.9
Length without tail0.30.71.0-1.00.70.61.0
Liver weight, left0.81.43.31.20.4-1.8-0.8
Liver weight, right0.40.60.80.90.7-0.6-0.8
Parametrial fat weight4.89.418.93.91.7-0.7-4.3
Retroperitoneal fat weight0.72.34.70.6-0.8-1.9-2.2
Intraocular pressure1.82.58.1-1.4-0.2-0.02.9
Extensor digitorum longus weight2.710.815.64.03.83.60.1
Soleus weight1.85.210.03.22.70.7-1.8
Tibialis anterior weight4.415.326.64.95.23.1-1.0
Tibia length0.10.41.10.20.2-0.4-1.1
Number of licking bursts3.13.66.6-1.7-2.6-2.1-0.6
Food consumed during 24 hour testing period1.51.83.21.81.60.8-0.9
Times rat made contact with spout0.50.61.90.40.61.40.2
Mean time between licks in bursts0.60.81.6-1.3-0.7-1.00.5
Mean num. licks in bursts3.64.36.91.62.62.61.1
Std. dev. time between licks in bursts0.40.41.40.00.3-1.2-0.5
Water consumed over 24 hours1.41.62.5-1.3-1.11.11.6
Indifference point 0 sec0.60.92.61.61.0-0.20.3
Indifference point AUC1.31.62.41.50.8-1.3-1.3
Indifference point function ln k0.91.22.41.10.81.5-0.8
Indifference point function log k0.91.22.41.10.81.5-0.8
Delay discounting total patch changes 0 sec0.61.02.81.70.9-0.4-0.1
Delay discounting total patch changes 12 sec0.20.20.60.50.1-0.80.2
Delay discounting total patch changes 18 sec0.10.20.50.3-0.2-0.7-0.1
Delay discounting total patch changes 24 sec0.60.81.70.80.6-1.3-0.6
Delay discounting total patch changes 6 sec1.01.53.41.30.9-1.80.2
Delay discounting time to switch 0 sec2.23.46.2-2.5-2.30.81.3
Delay discounting water rate 0 sec0.40.61.41.20.9-0.1-0.2
Delay discounting water rate 12 sec0.50.71.91.40.5-0.3-0.7
Delay discounting water rate 18 sec0.20.31.21.10.2-0.1-0.2
Delay discounting water rate 24 sec0.71.01.81.30.30.5-1.4
Delay discounting water rate 6 sec0.91.32.40.90.4-1.3-1.6
Locomotor activity0.40.61.1-0.31.00.41.1
Locomotor testing distance0.00.10.10.10.3-0.30.3
Locomotor testing rearing0.81.31.6-1.3-1.2-1.20.8
Light reinforcement 10.61.12.1-1.5-0.3-0.31.4
Light reinforcement 20.10.10.30.10.6-0.2-0.1
Reaction time number correct1.01.42.3-1.5-1.2-1.20.5
Reaction time mean minus median0.10.10.20.50.30.10.0
Reaction time mean minus median AUC0.10.10.3-0.10.1-0.40.6
Reaction time num false alarms0.10.10.2-0.4-0.2-0.4-0.3
Reaction time num false alarms AUC0.00.00.2-0.10.10.0-0.4
Reaction time trials correct on left1.01.42.3-1.5-1.2-1.20.5
Reaction time trials on left0.91.32.3-1.5-1.2-1.20.5
Reaction time mean0.20.30.60.00.80.50.6
Reaction time mean AUC0.40.51.2-0.20.60.61.1
Median of all reaction times0.40.50.8-0.10.90.70.8
Reaction time omissions0.60.82.1-0.5-0.11.50.9
Reaction time false alarm rate0.20.20.40.40.40.6-0.4
Reaction time premature initiation rate1.52.05.2-1.00.12.31.3
Reaction time premature initiations1.72.43.4-1.8-0.61.71.7
Std. dev. reaction times0.00.00.10.20.20.0-0.1
Reaction time trials completed0.91.32.3-1.5-1.2-1.20.5
Reaction time trials AUC0.81.22.0-1.4-1.0-1.20.4
Social response proportion0.80.91.0-1.0-1.0-1.00.7
Social responses0.71.01.8-0.7-1.3-0.21.3
Social time1.11.41.8-1.1-0.9-1.31.3
Conditioned locomotion0.70.81.8-0.50.01.31.1
Cocaine response after cond. corrected0.60.71.8-0.7-1.4-0.6-0.4
Cocaine response after cond. not corrected0.10.10.50.1-0.7-0.1-0.2
Cocaine response before conditioning1.41.83.61.91.41.20.0
Saline control response0.50.72.10.30.2-1.40.6
Condit. Reinf. active minus inactive responses0.81.01.30.71.1-1.0-1.1
Condit. Reinf. active-inactive response ratio2.42.56.30.70.5-1.7-2.5
Condit. Reinf. active responses0.20.31.00.51.0-0.2-0.3
Condit. Reinf. inactive responses0.81.02.10.00.51.51.3
Condit. Reinf. lever presses0.91.22.21.41.50.4-0.8
Condit. Reinf. lever reinforcers received0.20.20.50.30.7-0.4-0.4
Pavlov. Cond. lever latency0.71.01.7-1.3-0.8-0.31.2
Pavlov. Cond. magazine entry latency1.51.73.7-1.5-1.9-0.60.6
Pavlov. Cond. change in total contacts0.40.62.20.20.1-1.5-0.5
Pavlov. Cond. index score0.30.30.5-0.1-0.6-0.7-0.7
Pavlov. Cond. latency score0.20.30.50.0-0.6-0.5-0.7
Pavlov. Cond. lever contacts0.81.12.11.51.20.2-0.9
Pavlov. Cond. magazine entry number1.31.62.91.41.71.1-0.2
Pavlov. Cond. intertrial magazine entries2.43.15.02.12.21.4-1.0
Pavlov. Cond. lever-magazine prob. diff.0.20.30.7-0.4-0.8-0.6-0.3
Pavlov. Cond. response bias0.10.20.40.2-0.1-0.4-0.6
Conditioned reinforcement - actives0.40.41.6-0.30.1-0.11.3
Conditioned reinforcement - inactives0.20.20.6-0.20.0-0.80.1
Conditioned locomotion1.82.25.0-1.3-1.01.02.2
Intermittent access intake day 1-15 change0.40.41.20.40.2-1.1-0.6
Intermittent access intake escalation0.50.51.50.20.2-1.2-0.7
Intermittent access intake escalation 21.11.13.50.2-0.5-1.9-0.9
Intermitt. access day 1 inactive lever presses0.40.50.9-0.6-0.9-0.80.1
Intermitt. access day 15 inactive lever presses0.80.91.40.81.11.2-0.7
Intermitt. access escalation Index0.30.30.80.30.90.4-0.1
Intermittent access day 1 total infusions0.50.51.30.50.80.01.1
Intermittent access day 15 total infusions0.30.41.20.30.2-1.10.1
Intermittent access terminal intake (last 3 days)0.40.51.10.50.6-1.10.3
Intermittent access total infusions0.80.92.11.01.40.10.6
Intermittent access day 1 locomotion0.30.30.90.90.60.10.1
Intermittent access day 15 total locomotion1.11.13.30.7-0.2-1.8-0.8
Intermittent access total locomotion1.31.43.71.91.1-0.3-0.9
Intermittent access standard deviation1.31.44.60.6-0.5-2.1-0.7
Cocaine induced anxiety0.40.41.2-0.0-0.4-0.6-1.1
Post-drug Anxiety1.01.13.10.2-0.1-1.8-1.2
Baseline Anxiety0.20.20.30.40.6-0.60.3
Lifetime Intake0.60.71.60.71.30.10.8
Incentive Sensitization - Responses0.90.92.2-0.6-0.40.91.5
Incentive Sensitization - Breakpoint0.80.82.1-0.4-0.11.11.4
Progressive ratio test 1 active lever presses0.30.30.60.50.5-0.00.8
Progressive ratio test 1 breakpoint0.30.30.40.60.5-0.10.6
Progressive ratio test 1 inactive lever presses0.20.20.40.50.10.7-0.1
Progressive ratio test 2 active lever presses0.50.51.7-0.5-0.3-0.11.3
Progressive ratio test 2 breakpoint0.30.41.4-0.10.00.11.2
Progressive ratio test 2 inactive lever presses0.00.10.10.10.2-0.10.4
Total sessions with >9 infusions1.41.52.80.11.11.41.7
Short access day 1 total inactive lever presses0.50.51.7-0.4-0.30.41.3
Short access day 10 total inactive lever presses0.40.41.0-0.5-0.4-1.0-0.4
Short access day 1 total infusions1.51.64.6-1.1-0.20.62.1
Short access day 10 total infusions0.50.62.0-0.20.20.41.4
Short access total infusions0.60.71.30.41.00.31.2
Short access day 1 locomotion2.32.46.4-1.4-0.80.82.5
Short access day 10 total locomotion0.40.51.11.00.30.7-0.5
Short access total locomotion0.50.51.71.30.7-0.00.0
Compulsive drug intake0.20.20.60.40.30.2-0.8
One hour access (0.3 mA shock)1.41.73.41.30.8-1.8-1.0
One hour access (shock baseline)1.11.34.90.2-0.1-2.2-0.4
Number of responses in last shaping day0.90.92.3-0.40.51.01.5
Context. condit. distance diff. score0.80.92.0-0.1-1.4-0.9-0.9
Locomotion velocity, session 10.10.10.30.10.30.50.2
Locomotion distance, session 10.10.10.20.3-0.2-0.0-0.4
Locomotion velocity, session 20.20.20.50.50.10.3-0.7
Locomotion distance, session 20.30.40.70.80.50.8-0.2
Locomotion velocity, session 31.11.31.81.31.41.3-0.1
Locomotion distance, session 30.80.92.00.30.51.41.1
Stereotopy head waving bouts, day 30.60.72.0-0.11.4-0.60.7
Stereotopy head waving duration, day 30.50.61.90.11.4-0.30.5
Locomotion velocity, session 71.11.24.1-0.4-0.62.00.3
Locomotion distance, session 70.50.71.9-0.8-1.40.40.1
Stereotopy head waving bouts, day 70.30.40.80.30.90.70.4
Stereotopy head waving duration, day 70.80.91.60.91.31.20.0
Locomotion velocity, session 80.20.30.80.50.20.20.9
Locomotion distance, session 80.20.30.70.3-0.70.0-0.9
Degree of sensitization distance1.81.83.5-0.7-1.5-1.9-1.0
Degree of sensitization stereotypy0.50.51.60.40.31.30.4
Condit. Reinf. active minus inactive responses0.10.10.1-0.3-0.1-0.2-0.3
Condit. Reinf. active-inactive response ratio0.00.00.1-0.30.10.2-0.0
Condit. Reinf. active responses0.40.50.9-0.00.1-0.9-1.0
Condit. Reinf. inactive responses0.91.02.10.4-0.1-1.4-1.4
Incentive salience index mean0.40.51.00.40.50.6-1.0
Condit. Reinf. lever presses1.11.42.91.01.00.9-1.7
Time in familiar zone, hab. session 12.01.93.90.9-0.6-2.0-1.6
Time in novel zone, hab. session 14.14.08.5-1.20.42.92.4
Total zone transitions, hab. session 10.91.22.51.61.4-0.0-0.7
Total locomotion distance, hab. session 11.42.03.31.71.81.1-1.0
Locomotion velocity, hab. session 11.21.83.01.51.70.6-1.2
Time in familiar zone, hab. session 21.41.42.41.50.7-0.6-1.6
Time in novel zone, hab. session 20.90.91.9-1.4-0.80.21.0
Total zone transitions, hab. session 20.70.91.90.71.00.51.4
Total locomotion distance, hab. session 20.50.71.10.81.11.00.2
Locomotion velocity, hab. session 20.91.21.91.11.41.40.2
Novel to familiar place preference ratio0.80.82.0-1.4-0.4-0.50.9
Novelty place preference0.70.71.7-1.3-0.4-0.60.8
Time in novel zone, NPP test0.70.81.8-1.3-0.5-0.70.7
Total zone transitions, NPP test0.50.71.91.40.80.5-0.2
Total locomotion distance, NPP test0.40.61.20.90.30.5-1.1
Locomotion velocity, NPP test0.40.61.11.10.50.7-0.8
Pavlov. Cond. lever latency1.21.52.7-1.3-1.1-1.60.8
Pavlov. Cond. magazine entry latency0.40.51.70.50.21.3-0.1
Pavlov. Cond. change in total contacts1.01.13.90.20.32.00.5
Pavlov. Cond. index score0.60.82.10.80.41.4-0.6
Pavlov. Cond. latency score0.81.01.91.10.61.4-0.8
Pavlov. Cond. lever contacts1.11.33.30.90.81.8-0.7
Pavlov. Cond. magazine entry number0.40.51.80.00.3-1.3-0.1
Pavlov. Cond. intertrial magazine entries1.01.24.5-0.3-0.3-2.10.2
Pavlov. Cond. lever-magazine prob. diff.0.80.92.50.80.61.6-0.6
Pavlov. Cond. response bias0.50.62.40.1-0.21.6-0.2
Bone: apparent density0.30.61.30.91.1-0.40.1
Bone surface0.61.12.61.31.60.50.0
Bone volume0.91.52.91.61.70.4-0.4
Bone: connectivity density0.10.20.40.40.6-0.30.1
Bone: cortical apparent density0.40.50.8-0.6-0.9-0.8-0.5
Bone: cortical area2.53.76.72.62.40.3-1.6
Bone: cortical porosity1.31.42.21.21.51.40.1
Bone: cortical porosity1.11.22.40.81.31.50.5
Bone: cortical thickness1.52.53.92.01.7-0.2-1.8
Bone: cortical thickness0.30.40.70.80.4-0.8-0.4
Bone: cortical tissue density0.40.50.9-0.7-0.9-0.8-0.4
Bone: elastic displacement1.21.44.7-0.70.2-0.52.2
Bone: elastic work0.60.71.90.31.40.11.0
Bone: endosteal estimation0.71.62.91.71.60.8-0.3
Bone: endosteal perimeter0.30.71.01.00.91.00.0
Bone: final force3.86.313.53.13.70.8-1.2
Bone: final moment3.35.412.12.93.50.6-1.0
Bone: marrow area0.71.52.81.71.60.9-0.4
Bone: maximum diameter1.42.55.02.22.00.4-0.8
Bone: maximum force3.15.311.72.83.40.8-1.0
Bone: maximum moment2.54.410.32.53.20.6-0.8
Bone: minimum diameter0.71.42.41.51.50.7-0.6
Bone: periosteal estimation2.14.48.32.92.50.8-1.5
Bone: periosteal perimeter0.61.02.01.41.30.7-0.3
Bone: post-yield work3.04.17.62.82.11.2-1.8
Bone: stiffness4.16.510.83.33.30.9-2.0
Bone: tissue strength0.50.50.9-0.10.81.00.6
Bone: trabecular number0.30.51.01.00.8-0.6-0.3
Bone: trabecular spacing0.60.81.2-1.1-0.60.90.8
Bone: trabecular thickness1.11.32.21.51.1-1.2-0.6
Bone: trabecular tissue density0.10.10.30.40.5-0.1-0.1
Breakpoint value in progressive ratio session0.20.20.6-0.10.2-0.8-0.2
Distance traveled before self-admin0.60.60.8-0.50.90.90.9
Distance traveled after self-admin2.22.43.9-1.01.22.01.8
Delta time in closed arm before/after self-admin1.81.73.7-1.3-1.91.10.5
Delta time in open arm before/after self-admin5.04.88.92.73.0-0.8-1.5
Diff in mean of infusions in LGA sessions0.80.91.90.4-0.4-1.4-1.1
Extinction: sum of active levers before priming0.30.30.4-0.6-0.6-0.50.5
Active lever presses in extinction session 61.21.12.41.10.7-0.8-1.5
Delta distance traveled before/after self-admin0.60.61.1-0.7-0.11.10.8
Delta ambulatory time before/after self-admin0.50.50.9-0.60.10.80.9
Time in closed arm before self-admin0.50.51.4-0.2-0.8-1.2-0.3
Time in closed arm after self-admin3.33.48.3-1.7-2.9-1.6-0.2
Time in open arm before self-admin0.20.30.6-0.50.00.40.8
Time in open arm after self-admin4.24.612.02.43.50.5-0.5
Sum of active levers in priming session hrs 5-60.90.91.90.81.41.0-0.2
Time to tail flick, vehicle, before self-admin0.10.10.20.4-0.0-0.4-0.2
Time to tail flick, vehicle, after self-admin0.30.40.90.3-0.5-0.5-0.9
Time to tail flick, test, before self-admin0.80.81.31.10.71.2-0.4
Time to tail flick, test, after self-admin1.51.53.3-0.0-1.70.1-1.8
Delta time to tail flick, vehicle, before/after SA0.20.20.80.40.10.1-0.9
Delta time to tail flick, test, before/after SA0.80.71.5-0.2-1.2-0.3-1.0
Ambulatory time before self-admin0.40.41.1-0.40.50.41.0
Ambulatory time after self-admin2.62.95.5-1.11.01.92.3
Total heroin consumption0.30.31.1-0.1-0.2-0.31.1
Area under the delay curve0.30.40.90.40.4-0.3-1.0
Delay disc. indifference point, 0s delay0.40.50.90.90.30.7-0.7
Delay disc. indifference point, 16s delay1.81.84.1-0.9-1.2-2.0-1.0
Delay disc. indifference point, 2s delay3.64.07.22.32.71.4-1.2
Delay disc. indifference point, 24s delay0.70.61.3-0.8-0.8-1.1-0.1
Delay disc. indifference point, 4s delay0.30.31.10.50.10.1-1.0
Delay disc. indifference point, 8s delay0.30.30.60.30.80.6-0.3
Delay discount exponential model param0.20.20.7-0.3-0.20.20.8
Delay discount hyperbolic model param0.30.30.7-0.5-0.6-0.00.8
Fecal boli incidents, locomotor time 11.82.03.7-1.5-1.90.51.3
Change in fecal boli incidents, locomotor task2.22.13.61.41.9-0.6-1.6
Time >=10cm from walls, locomotor time 11.11.12.2-0.50.51.51.4
Bouts of movement, locomotor time 10.80.91.3-0.4-1.1-1.0-1.0
Total resting periods, locomotor time 10.60.61.2-0.3-1.1-0.7-0.9
Rest time, locomotor task time 11.01.02.0-1.4-1.10.60.8
Distance moved, locomotor task time 11.21.42.51.61.2-0.6-1.1
Vertical activity count, locomotor time 11.11.12.31.31.5-0.6-0.3
Time >=10cm from walls, locomotor time 21.41.43.60.10.71.91.3
Bouts of movement, locomotor time 21.01.12.8-0.5-0.31.71.1
Total resting periods, locomotor time 20.91.02.9-0.3-0.31.70.9
Rest time, locomotor task time 20.20.20.30.3-0.50.4-0.5
Distance moved, locomotor task time 20.10.10.30.10.50.00.3
Vertical activity count, locomotor time 20.50.51.3-0.50.7-0.31.1
Weight adjusted by age1.41.64.91.2-0.0-0.2-2.2
Seeking ratio, delayed vs. immediate footshock0.50.60.7-0.8-0.80.70.8
Locomotion in novel chamber1.31.62.71.00.2-1.7-1.6
Locomotion in novel chamber post-restriction1.92.26.8-0.8-0.9-2.6-0.7
Progressive ratio0.10.10.3-0.3-0.2-0.6-0.1
Food seeking constrained by brief footshock0.00.00.1-0.10.1-0.30.2
Seeking ratio, punishment vs. effort0.40.50.80.40.90.90.4
Run reversals in cocaine runway, females1.91.93.11.41.51.80.0
Run reversals in cocaine runway, males0.30.31.1-0.30.31.00.3
Latency to leave start box in cocaine runway1.01.11.71.30.5-1.0-1.3
Latency to leave start box in cocaine runway, F0.50.51.00.2-1.0-0.7-0.8
Latency to leave start box in cocaine runway, M1.00.92.01.11.4-0.6-0.4
Cd content in liver2.42.64.3-2.1-2.0-1.20.9
Co content in liver0.70.91.71.01.30.00.9
Cu content in liver1.31.53.61.21.90.7-0.8
Fe content in liver1.61.95.9-0.8-0.8-2.4-0.5
K content in liver2.72.75.91.32.41.5-1.1
Mg content in liver0.60.71.30.21.11.20.2
Mn content in liver0.30.40.60.80.60.80.1
Na content in liver3.03.25.01.62.22.2-0.5
Rb content in liver0.60.71.10.71.0-1.1-0.3
Se content in liver0.20.30.50.40.5-0.3-0.7
Sr content in liver0.30.30.70.9-0.0-0.3-0.5
Zn content in liver2.12.36.51.01.42.5-0.1