Krt12

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression ENSRNOG00000011986 0.06 0.04 3.7e-05 0.05 0.05 0.05 0.05 9.0e-06 1.5e-05 1.4e-05 1.3e-05
2 NAcc gene expression ENSRNOG00000011986 0.08 0.05 6.5e-04 0.04 0.05 0.04 0.01 6.0e-04 2.2e-04 1.2e-03 6.1e-02
3 PL gene expression ENSRNOG00000011986 0.05 0.03 1.9e-03 0.04 0.02 0.03 0.03 1.1e-03 7.8e-03 4.6e-03 5.0e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail1.24.07.7-2.8-1.1-1.8
BMI without tail0.10.30.3-0.6-0.5-0.5
Body weight2.410.221.1-4.6-1.3-2.8
Epididymis fat weight0.20.41.0-0.2-1.0-0.3
Glucose0.10.10.30.1-0.20.5
Heart weight2.94.16.2-2.5-1.2-2.2
Left kidney weight0.82.44.0-1.82.00.1
Right kidney weight0.71.94.4-0.52.11.1
Tail length0.10.30.4-0.70.7-0.4
Length with tail1.03.78.9-3.00.4-1.5
Length without tail1.22.67.0-2.60.2-0.9
Liver weight, left0.10.10.20.20.20.5
Liver weight, right3.04.97.80.92.82.5
Parametrial fat weight1.53.04.71.90.62.2
Retroperitoneal fat weight0.00.10.1-0.40.10.3
Intraocular pressure3.34.78.5-2.2-0.9-2.9
Extensor digitorum longus weight5.823.338.2-6.2-2.4-5.1
Soleus weight0.10.20.5-0.1-0.70.3
Tibialis anterior weight0.62.05.0-2.20.2-1.0
Tibia length0.61.74.5-2.1-0.1-0.8
Number of licking bursts0.20.30.50.4-0.70.4
Food consumed during 24 hour testing period0.70.81.3-1.1-0.3-1.0
Times rat made contact with spout0.40.50.80.8-0.9-0.0
Mean time between licks in bursts2.94.17.0-1.2-2.6-1.9
Mean num. licks in bursts0.10.10.10.20.3-0.3
Std. dev. time between licks in bursts0.40.51.40.1-1.2-0.1
Water consumed over 24 hours0.40.50.8-0.6-0.9-0.7
Indifference point 0 sec0.71.02.81.7-0.50.4
Indifference point AUC0.10.10.2-0.00.00.4
Indifference point function ln k0.00.10.1-0.30.3-0.2
Indifference point function log k0.00.10.1-0.30.3-0.2
Delay discounting total patch changes 0 sec0.50.92.01.4-0.70.2
Delay discounting total patch changes 12 sec3.14.18.42.9-0.12.0
Delay discounting total patch changes 18 sec0.50.60.80.8-0.90.6
Delay discounting total patch changes 24 sec1.41.72.61.50.61.6
Delay discounting total patch changes 6 sec0.91.43.01.70.11.0
Delay discounting time to switch 0 sec0.10.10.20.50.40.1
Delay discounting water rate 0 sec0.00.00.10.3-0.20.1
Delay discounting water rate 12 sec0.00.00.1-0.1-0.00.3
Delay discounting water rate 18 sec1.01.32.70.90.81.6
Delay discounting water rate 24 sec0.30.40.70.9-0.20.7
Delay discounting water rate 6 sec1.42.12.91.60.81.7
Locomotor activity0.61.01.71.10.31.3
Locomotor testing distance1.32.14.22.00.41.5
Locomotor testing rearing3.65.69.43.11.42.4
Light reinforcement 12.24.17.32.70.82.1
Light reinforcement 20.81.01.31.01.10.9
Reaction time number correct0.50.80.9-1.0-1.0-0.7
Reaction time mean minus median1.41.93.0-0.5-1.7-1.5
Reaction time mean minus median AUC0.70.91.7-0.0-1.3-1.0
Reaction time num false alarms0.50.71.21.1-0.60.7
Reaction time num false alarms AUC0.60.81.31.0-1.10.4
Reaction time trials correct on left0.50.80.9-1.0-1.0-0.7
Reaction time trials on left0.50.81.0-0.9-1.0-0.7
Reaction time mean0.20.30.50.70.40.2
Reaction time mean AUC0.30.40.50.70.70.4
Median of all reaction times1.01.42.11.41.11.0
Reaction time omissions0.71.02.31.50.30.8
Reaction time false alarm rate0.60.91.81.4-0.50.8
Reaction time premature initiation rate3.54.77.60.92.82.4
Reaction time premature initiations1.42.03.40.11.81.6
Std. dev. reaction times0.40.61.20.1-1.1-0.7
Reaction time trials completed0.50.81.0-0.9-1.0-0.7
Reaction time trials AUC0.60.91.3-0.9-1.1-0.8
Social response proportion0.40.40.7-0.90.7-0.2
Social responses0.10.10.3-0.00.60.2
Social time0.40.51.20.1-1.1-0.6
Conditioned locomotion0.40.50.60.50.70.8
Cocaine response after cond. corrected1.31.51.81.01.31.3
Cocaine response after cond. not corrected1.41.62.51.11.11.6
Cocaine response before conditioning0.10.20.40.2-0.60.3
Saline control response0.10.20.3-0.60.40.1
Condit. Reinf. active minus inactive responses0.70.82.01.4-0.40.7
Condit. Reinf. active-inactive response ratio0.60.71.61.3-0.40.5
Condit. Reinf. active responses1.11.53.21.8-0.31.1
Condit. Reinf. inactive responses1.11.32.41.50.21.3
Condit. Reinf. lever presses0.10.20.20.40.30.5
Condit. Reinf. lever reinforcers received1.11.53.11.80.01.2
Pavlov. Cond. lever latency0.20.20.5-0.70.2-0.3
Pavlov. Cond. magazine entry latency0.00.10.1-0.1-0.2-0.3
Pavlov. Cond. change in total contacts0.30.40.60.8-0.70.1
Pavlov. Cond. index score0.10.10.20.4-0.4-0.0
Pavlov. Cond. latency score0.10.10.30.3-0.6-0.2
Pavlov. Cond. lever contacts0.40.51.01.0-0.20.6
Pavlov. Cond. magazine entry number0.00.00.0-0.1-0.0-0.1
Pavlov. Cond. intertrial magazine entries1.01.21.9-1.3-0.2-1.4
Pavlov. Cond. lever-magazine prob. diff.0.10.10.20.2-0.4-0.1
Pavlov. Cond. response bias0.60.81.61.30.20.9
Conditioned reinforcement - actives0.30.30.50.7-0.5-0.5
Conditioned reinforcement - inactives1.41.53.01.7-1.30.1
Conditioned locomotion0.40.40.70.6-0.8-0.6
Intermittent access intake day 1-15 change0.90.92.00.80.01.4
Intermittent access intake escalation1.11.12.40.80.41.6
Intermittent access intake escalation 20.10.10.30.3-0.20.5
Intermitt. access day 1 inactive lever presses4.24.66.31.82.12.5
Intermitt. access day 15 inactive lever presses2.93.25.22.30.82.0
Intermitt. access escalation Index1.00.92.0-1.40.90.0
Intermittent access day 1 total infusions0.20.20.30.50.3-0.3
Intermittent access day 15 total infusions1.11.31.41.01.21.2
Intermittent access terminal intake (last 3 days)0.80.81.21.10.90.8
Intermittent access total infusions0.50.50.90.70.90.5
Intermittent access day 1 locomotion0.70.81.30.4-1.1-0.9
Intermittent access day 15 total locomotion1.61.73.70.6-1.9-1.0
Intermittent access total locomotion0.60.61.00.9-1.0-0.2
Intermittent access standard deviation2.12.34.12.00.41.6
Cocaine induced anxiety1.31.52.5-1.41.6-0.2
Post-drug Anxiety1.11.22.8-0.51.70.6
Baseline Anxiety0.60.71.11.0-0.90.4
Lifetime Intake0.80.91.70.81.30.7
Incentive Sensitization - Responses2.02.03.31.4-1.8-0.9
Incentive Sensitization - Breakpoint1.81.83.01.3-1.7-0.8
Progressive ratio test 1 active lever presses0.40.40.50.70.70.4
Progressive ratio test 1 breakpoint0.40.40.60.60.70.5
Progressive ratio test 1 inactive lever presses2.02.12.71.51.21.6
Progressive ratio test 2 active lever presses0.60.61.71.3-0.3-0.0
Progressive ratio test 2 breakpoint0.40.51.31.1-0.3-0.0
Progressive ratio test 2 inactive lever presses0.30.41.11.1-0.0-0.2
Total sessions with >9 infusions1.01.11.50.91.21.0
Short access day 1 total inactive lever presses1.51.73.61.90.80.9
Short access day 10 total inactive lever presses0.40.40.70.20.90.7
Short access day 1 total infusions2.42.64.81.02.21.4
Short access day 10 total infusions0.30.40.60.80.50.4
Short access total infusions1.92.14.00.82.01.3
Short access day 1 locomotion2.82.94.92.21.11.6
Short access day 10 total locomotion1.51.63.01.2-1.7-0.6
Short access total locomotion0.40.40.70.8-0.7-0.0
Compulsive drug intake1.11.01.5-0.7-1.2-1.1
One hour access (0.3 mA shock)0.10.10.30.1-0.0-0.5
One hour access (shock baseline)0.60.61.00.71.00.6
Number of responses in last shaping day0.60.60.90.90.40.8
Context. condit. distance diff. score1.21.52.5-1.61.0-1.0
Locomotion velocity, session 10.10.10.3-0.5-0.1-0.1
Locomotion distance, session 10.81.12.3-1.5-0.4-0.8
Locomotion velocity, session 20.10.10.2-0.30.50.3
Locomotion distance, session 20.00.00.1-0.10.10.3
Locomotion velocity, session 30.10.10.20.20.50.3
Locomotion distance, session 30.10.10.2-0.4-0.1-0.4
Stereotopy head waving bouts, day 32.02.43.21.51.31.8
Stereotopy head waving duration, day 30.40.50.90.20.71.0
Locomotion velocity, session 71.21.31.9-1.2-1.4-0.8
Locomotion distance, session 71.11.51.9-0.8-1.4-1.4
Stereotopy head waving bouts, day 71.11.31.70.71.31.3
Stereotopy head waving duration, day 71.41.72.60.61.61.5
Locomotion velocity, session 84.15.010.0-3.2-0.1-2.2
Locomotion distance, session 80.60.91.8-1.30.6-0.7
Degree of sensitization distance1.81.82.4-1.2-1.2-1.5
Degree of sensitization stereotypy1.31.41.61.01.21.3
Condit. Reinf. active minus inactive responses1.01.11.41.11.20.8
Condit. Reinf. active-inactive response ratio1.01.11.31.11.10.9
Condit. Reinf. active responses0.80.91.31.11.00.7
Condit. Reinf. inactive responses0.10.10.10.40.20.4
Incentive salience index mean1.11.32.51.60.80.9
Condit. Reinf. lever presses0.40.51.21.1-0.20.5
Time in familiar zone, hab. session 10.60.61.30.10.71.1
Time in novel zone, hab. session 10.60.50.70.6-0.9-0.7
Total zone transitions, hab. session 11.21.63.0-1.70.3-1.4
Total locomotion distance, hab. session 10.20.30.9-0.21.00.0
Locomotion velocity, hab. session 10.30.51.2-0.41.10.0
Time in familiar zone, hab. session 22.02.13.40.81.91.5
Time in novel zone, hab. session 20.90.92.20.4-1.5-0.5
Total zone transitions, hab. session 21.01.32.0-1.1-0.7-1.4
Total locomotion distance, hab. session 20.30.40.7-0.3-0.6-0.9
Locomotion velocity, hab. session 20.40.50.8-0.6-0.6-0.9
Novel to familiar place preference ratio0.70.71.1-1.01.0-0.1
Novelty place preference0.60.61.0-1.00.9-0.2
Time in novel zone, NPP test0.50.51.1-0.61.00.2
Total zone transitions, NPP test0.70.91.3-0.8-1.0-1.1
Total locomotion distance, NPP test0.20.30.50.0-0.7-0.6
Locomotion velocity, NPP test0.50.71.2-0.6-0.8-1.1
Pavlov. Cond. lever latency1.41.83.2-1.8-0.5-1.4
Pavlov. Cond. magazine entry latency6.38.113.43.71.43.0
Pavlov. Cond. change in total contacts5.25.68.32.91.82.3
Pavlov. Cond. index score4.15.210.13.20.72.2
Pavlov. Cond. latency score3.13.97.42.70.62.0
Pavlov. Cond. lever contacts0.91.02.31.50.00.9
Pavlov. Cond. magazine entry number6.78.415.2-3.9-1.4-2.8
Pavlov. Cond. intertrial magazine entries0.81.01.7-1.3-0.4-1.1
Pavlov. Cond. lever-magazine prob. diff.4.45.511.13.30.72.3
Pavlov. Cond. response bias5.36.410.83.31.42.6
Bone: apparent density2.13.55.42.10.82.3
Bone surface0.20.41.00.1-0.21.0
Bone volume0.30.61.30.5-0.31.1
Bone: connectivity density3.04.76.92.50.92.6
Bone: cortical apparent density2.22.97.32.70.21.2
Bone: cortical area0.10.10.10.2-0.40.4
Bone: cortical porosity0.40.41.00.20.41.0
Bone: cortical porosity0.50.51.10.10.71.0
Bone: cortical thickness0.81.31.91.20.91.4
Bone: cortical thickness6.98.19.62.62.93.1
Bone: cortical tissue density2.22.97.32.70.21.2
Bone: elastic displacement0.70.71.3-0.0-1.1-1.0
Bone: elastic work0.20.30.60.40.30.8
Bone: endosteal estimation1.32.84.5-2.1-1.5-1.3
Bone: endosteal perimeter1.42.93.4-1.6-1.8-1.6
Bone: final force0.71.22.90.80.21.7
Bone: final moment0.50.82.10.70.11.4
Bone: marrow area1.22.64.2-2.0-1.5-1.2
Bone: maximum diameter0.00.10.10.2-0.30.4
Bone: maximum force0.10.20.5-0.2-0.40.7
Bone: maximum moment0.10.20.2-0.4-0.50.5
Bone: minimum diameter0.20.51.0-1.0-0.6-0.2
Bone: periosteal estimation0.20.40.7-0.7-0.8-0.1
Bone: periosteal perimeter0.61.11.5-1.0-1.2-0.8
Bone: post-yield work1.11.42.6-1.6-0.9-1.0
Bone: stiffness0.40.71.6-0.10.71.3
Bone: tissue strength2.42.43.7-1.1-1.9-1.5
Bone: trabecular number4.57.09.93.11.23.1
Bone: trabecular spacing1.01.42.0-1.4-0.3-1.4
Bone: trabecular thickness0.30.40.80.5-0.90.2
Bone: trabecular tissue density0.10.20.5-0.20.1-0.7
Breakpoint value in progressive ratio session0.40.40.80.50.30.9
Distance traveled before self-admin0.10.10.3-0.10.50.1
Distance traveled after self-admin0.60.61.5-1.20.1-0.6
Delta time in closed arm before/after self-admin1.31.33.3-1.8-0.1-0.7
Delta time in open arm before/after self-admin0.00.00.1-0.10.30.1
Diff in mean of infusions in LGA sessions0.10.10.20.4-0.00.4
Extinction: sum of active levers before priming0.90.91.6-1.3-0.9-0.5
Active lever presses in extinction session 63.33.15.61.21.62.4
Delta distance traveled before/after self-admin0.70.81.6-1.3-0.1-0.8
Delta ambulatory time before/after self-admin0.50.61.3-1.2-0.2-0.6
Time in closed arm before self-admin0.20.20.50.70.20.2
Time in closed arm after self-admin0.30.30.7-0.80.5-0.0
Time in open arm before self-admin0.40.41.2-1.10.0-0.3
Time in open arm after self-admin0.30.40.4-0.5-0.7-0.7
Sum of active levers in priming session hrs 5-61.51.52.30.51.51.4
Time to tail flick, vehicle, before self-admin2.12.13.2-0.1-1.8-1.8
Time to tail flick, vehicle, after self-admin0.20.30.60.0-0.8-0.4
Time to tail flick, test, before self-admin1.31.32.2-1.2-0.6-1.5
Time to tail flick, test, after self-admin0.60.61.10.1-1.1-0.8
Delta time to tail flick, vehicle, before/after SA0.40.40.80.5-0.30.9
Delta time to tail flick, test, before/after SA0.70.61.71.3-0.20.3
Ambulatory time before self-admin0.10.10.3-0.10.1-0.6
Ambulatory time after self-admin1.11.22.5-1.6-0.1-1.0
Total heroin consumption1.31.63.61.9-0.11.1
Area under the delay curve0.80.82.10.41.50.5
Delay disc. indifference point, 0s delay0.80.81.21.00.61.1
Delay disc. indifference point, 16s delay3.53.58.40.22.91.4
Delay disc. indifference point, 2s delay0.30.40.91.0-0.00.4
Delay disc. indifference point, 24s delay0.20.20.3-0.40.5-0.4
Delay disc. indifference point, 4s delay2.52.64.30.92.11.6
Delay disc. indifference point, 8s delay0.00.00.00.2-0.0-0.2
Delay discount exponential model param0.80.82.4-0.1-1.5-0.4
Delay discount hyperbolic model param0.70.82.1-0.3-1.5-0.5
Fecal boli incidents, locomotor time 11.31.52.8-0.7-1.7-1.0
Change in fecal boli incidents, locomotor task0.30.30.8-0.10.9-0.3
Time >=10cm from walls, locomotor time 10.00.00.00.2-0.0-0.2
Bouts of movement, locomotor time 10.10.10.2-0.40.30.4
Total resting periods, locomotor time 10.20.20.6-0.8-0.3-0.2
Rest time, locomotor task time 10.60.72.10.1-1.4-0.1
Distance moved, locomotor task time 11.31.43.90.12.00.6
Vertical activity count, locomotor time 10.20.20.2-0.30.5-0.4
Time >=10cm from walls, locomotor time 20.50.51.51.2-0.10.4
Bouts of movement, locomotor time 20.80.81.50.60.71.2
Total resting periods, locomotor time 20.70.81.50.50.81.2
Rest time, locomotor task time 20.50.60.8-0.8-0.9-0.5
Distance moved, locomotor task time 20.50.61.4-0.61.2-0.0
Vertical activity count, locomotor time 20.30.40.5-0.70.3-0.7
Weight adjusted by age0.60.71.1-0.40.91.1
Seeking ratio, delayed vs. immediate footshock0.30.30.70.40.90.2
Locomotion in novel chamber4.86.07.62.32.22.8
Locomotion in novel chamber post-restriction0.60.71.21.1-0.70.5
Progressive ratio0.30.40.90.50.10.9
Food seeking constrained by brief footshock0.30.40.50.60.60.7
Seeking ratio, punishment vs. effort0.10.20.4-0.20.0-0.6
Run reversals in cocaine runway, females1.91.92.8-1.61.7-0.6
Run reversals in cocaine runway, males0.40.40.70.40.90.5
Latency to leave start box in cocaine runway0.80.81.8-1.4-0.2-0.8
Latency to leave start box in cocaine runway, F0.50.61.4-1.20.5-0.0
Latency to leave start box in cocaine runway, M0.10.10.20.1-0.2-0.5
Cd content in liver0.20.20.40.20.60.5
Co content in liver0.40.51.0-0.70.2-1.0
Cu content in liver0.20.20.7-0.00.80.0
Fe content in liver0.50.61.0-1.00.90.1
K content in liver3.63.65.51.51.82.3
Mg content in liver2.42.53.01.31.71.7
Mn content in liver2.52.93.71.91.21.9
Na content in liver1.31.43.30.70.61.8
Rb content in liver0.70.81.81.30.40.7
Se content in liver5.46.57.42.72.22.7
Sr content in liver0.10.10.10.3-0.1-0.2
Zn content in liver1.71.94.02.00.71.1