Rnf7

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver gene expression ENSRNOG00000011663 0.05 0.03 1.5e-05 0.05 0.04 0.04 0.04 7.3e-06 2.5e-05 2.1e-05 3.2e-05
2 Liver isoform ratio ENSRNOT00000015821 0.11 0.07 2.9e-04 0.04 0.01 0.02 0.03 4.2e-05 9.0e-03 1.8e-03 2.9e-04
3 Liver isoform ratio ENSRNOT00000096041 0.09 0.06 5.8e-04 0.03 0.01 0.02 0.03 1.3e-04 1.4e-02 3.0e-03 7.5e-04
4 PL gene expression ENSRNOG00000011663 0.07 0.05 3.7e-03 0.03 0.04 0.06 0.06 1.3e-03 6.6e-04 2.3e-05 2.2e-05

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail2.47.915.0-1.4-2.72.73.9
BMI without tail4.18.713.50.8-3.23.23.7
Body weight3.916.528.9-0.3-4.34.35.4
Epididymis fat weight0.20.40.5-0.7-0.50.50.7
Glucose0.10.10.4-0.6-0.10.10.3
Heart weight0.30.41.1-0.5-0.40.41.0
Left kidney weight2.16.111.1-1.5-2.42.43.3
Right kidney weight2.05.710.7-1.4-2.22.23.3
Tail length2.98.710.12.6-3.23.22.8
Length with tail1.55.56.81.3-2.62.62.6
Length without tail0.61.42.2-0.7-1.21.21.5
Liver weight, left0.81.31.61.0-1.31.31.0
Liver weight, right0.30.51.1-0.2-0.60.61.0
Parametrial fat weight0.91.72.91.7-1.31.30.7
Retroperitoneal fat weight1.34.35.51.2-2.42.42.2
Intraocular pressure1.01.42.40.3-1.31.31.6
Extensor digitorum longus weight1.14.49.3-0.8-2.02.03.0
Soleus weight2.05.87.80.7-2.82.82.7
Tibialis anterior weight1.44.77.2-0.0-2.42.42.7
Tibia length4.312.014.32.5-3.83.83.6
Number of licking bursts1.21.52.01.4-1.31.30.7
Food consumed during 24 hour testing period0.50.61.41.2-0.70.70.3
Times rat made contact with spout0.20.30.4-0.2-0.60.60.4
Mean time between licks in bursts0.50.71.0-1.00.8-0.8-0.6
Mean num. licks in bursts0.80.92.8-1.70.7-0.7-0.2
Std. dev. time between licks in bursts2.02.42.6-1.31.6-1.6-1.6
Water consumed over 24 hours1.01.21.81.0-1.31.30.6
Indifference point 0 sec0.10.10.1-0.2-0.30.30.3
Indifference point AUC3.44.05.6-1.42.4-2.4-1.7
Indifference point function ln k3.14.35.81.7-2.42.41.7
Indifference point function log k3.14.35.81.7-2.42.41.7
Delay discounting total patch changes 0 sec0.10.10.2-0.2-0.40.40.4
Delay discounting total patch changes 12 sec3.95.26.4-2.42.5-2.5-1.5
Delay discounting total patch changes 18 sec0.60.81.1-1.01.0-1.0-0.4
Delay discounting total patch changes 24 sec0.50.60.8-0.40.9-0.9-0.7
Delay discounting total patch changes 6 sec0.91.41.7-0.91.3-1.3-1.3
Delay discounting time to switch 0 sec1.01.51.9-0.01.4-1.4-1.4
Delay discounting water rate 0 sec1.32.02.90.8-1.71.71.2
Delay discounting water rate 12 sec3.34.97.20.8-2.72.72.1
Delay discounting water rate 18 sec3.03.95.90.0-2.22.22.4
Delay discounting water rate 24 sec2.23.04.31.1-2.12.11.5
Delay discounting water rate 6 sec4.46.38.31.2-2.92.92.7
Locomotor activity1.01.72.30.4-1.51.51.4
Locomotor testing distance0.40.60.90.2-0.90.90.8
Locomotor testing rearing0.20.30.5-0.0-0.70.70.5
Light reinforcement 11.01.82.21.2-1.51.51.3
Light reinforcement 21.01.31.41.1-1.21.21.0
Reaction time number correct0.00.00.00.1-0.20.2-0.1
Reaction time mean minus median0.30.30.7-0.80.6-0.6-0.0
Reaction time mean minus median AUC0.10.10.3-0.4-0.00.00.5
Reaction time num false alarms0.10.10.20.30.3-0.3-0.5
Reaction time num false alarms AUC0.30.40.70.30.6-0.6-0.8
Reaction time trials correct on left0.00.00.00.1-0.20.2-0.1
Reaction time trials on left0.00.00.00.1-0.20.2-0.1
Reaction time mean0.00.00.0-0.10.2-0.2-0.1
Reaction time mean AUC0.00.00.00.20.2-0.2-0.2
Median of all reaction times0.00.00.10.30.1-0.1-0.2
Reaction time omissions0.30.40.6-0.60.7-0.7-0.5
Reaction time false alarm rate0.10.10.20.40.3-0.3-0.4
Reaction time premature initiation rate0.40.51.31.10.3-0.3-0.9
Reaction time premature initiations0.30.40.70.80.3-0.3-0.9
Std. dev. reaction times0.10.20.3-0.50.5-0.5-0.3
Reaction time trials completed0.00.00.00.1-0.20.2-0.1
Reaction time trials AUC0.00.00.00.1-0.10.1-0.1
Social response proportion0.20.20.4-0.20.6-0.6-0.1
Social responses0.10.10.20.40.2-0.2-0.2
Social time0.00.00.20.1-0.00.0-0.4
Conditioned locomotion2.53.03.8-1.01.9-1.9-1.9
Cocaine response after cond. corrected1.92.12.81.2-1.71.71.2
Cocaine response after cond. not corrected3.33.74.61.5-2.12.11.8
Cocaine response before conditioning0.70.90.90.9-1.01.00.9
Saline control response0.60.81.0-1.0-0.90.90.7
Condit. Reinf. active minus inactive responses1.51.92.41.6-1.41.41.2
Condit. Reinf. active-inactive response ratio5.76.07.22.0-2.72.72.4
Condit. Reinf. active responses0.40.51.71.3-0.40.40.2
Condit. Reinf. inactive responses1.41.82.3-0.41.5-1.5-1.5
Condit. Reinf. lever presses2.02.73.21.5-1.81.81.4
Condit. Reinf. lever reinforcers received0.20.31.11.0-0.30.30.2
Pavlov. Cond. lever latency0.91.22.50.90.9-0.9-1.6
Pavlov. Cond. magazine entry latency0.81.01.6-1.1-0.70.71.3
Pavlov. Cond. change in total contacts2.02.85.0-0.5-1.71.72.2
Pavlov. Cond. index score1.01.32.4-0.5-1.11.11.5
Pavlov. Cond. latency score0.91.22.3-0.6-1.01.01.5
Pavlov. Cond. lever contacts1.11.52.8-0.6-1.21.21.7
Pavlov. Cond. magazine entry number0.30.30.70.60.4-0.4-0.8
Pavlov. Cond. intertrial magazine entries2.43.15.60.81.7-1.7-2.4
Pavlov. Cond. lever-magazine prob. diff.0.91.22.3-0.7-1.01.01.5
Pavlov. Cond. response bias0.81.12.1-0.8-1.01.01.4
Conditioned reinforcement - actives0.30.30.30.5-0.50.50.5
Conditioned reinforcement - inactives0.10.10.30.5-0.30.30.4
Conditioned locomotion0.20.30.9-0.90.0-0.00.5
Intermittent access intake day 1-15 change0.10.10.20.4-0.30.30.3
Intermittent access intake escalation0.00.00.0-0.00.1-0.10.0
Intermittent access intake escalation 20.20.20.50.70.2-0.2-0.4
Intermitt. access day 1 inactive lever presses2.22.42.9-1.71.7-1.7-0.9
Intermitt. access day 15 inactive lever presses0.20.20.3-0.20.5-0.5-0.3
Intermitt. access escalation Index0.60.62.11.4-0.30.3-0.2
Intermittent access day 1 total infusions0.10.10.2-0.1-0.30.30.4
Intermittent access day 15 total infusions0.60.70.90.3-0.90.91.0
Intermittent access terminal intake (last 3 days)0.80.81.10.4-1.01.01.1
Intermittent access total infusions0.10.10.1-0.2-0.20.20.4
Intermittent access day 1 locomotion0.20.20.3-0.6-0.20.20.5
Intermittent access day 15 total locomotion0.10.10.2-0.50.2-0.2-0.0
Intermittent access total locomotion0.60.61.1-1.00.8-0.8-0.4
Intermittent access standard deviation0.10.10.10.2-0.40.40.3
Cocaine induced anxiety0.80.91.2-0.71.1-1.1-0.9
Post-drug Anxiety0.20.20.3-0.60.4-0.4-0.3
Baseline Anxiety0.20.20.7-0.80.1-0.10.1
Lifetime Intake0.10.10.2-0.1-0.30.30.5
Incentive Sensitization - Responses0.30.30.40.3-0.70.70.6
Incentive Sensitization - Breakpoint0.40.40.50.3-0.70.70.6
Progressive ratio test 1 active lever presses0.10.10.3-0.60.1-0.10.2
Progressive ratio test 1 breakpoint0.20.20.8-0.90.2-0.20.3
Progressive ratio test 1 inactive lever presses0.50.50.7-0.70.8-0.8-0.4
Progressive ratio test 2 active lever presses0.10.10.1-0.3-0.10.10.3
Progressive ratio test 2 breakpoint0.00.00.0-0.0-0.10.10.2
Progressive ratio test 2 inactive lever presses0.10.10.30.50.1-0.1-0.2
Total sessions with >9 infusions0.40.40.70.2-0.70.70.8
Short access day 1 total inactive lever presses2.62.83.8-1.12.0-2.0-1.6
Short access day 10 total inactive lever presses2.02.33.2-1.81.6-1.6-0.9
Short access day 1 total infusions0.10.10.1-0.30.4-0.4-0.1
Short access day 10 total infusions0.20.20.4-0.4-0.40.40.6
Short access total infusions0.10.10.3-0.50.2-0.20.1
Short access day 1 locomotion1.11.21.6-0.81.2-1.2-1.0
Short access day 10 total locomotion2.22.43.4-1.81.6-1.6-0.9
Short access total locomotion0.60.71.6-1.30.7-0.7-0.2
Compulsive drug intake0.50.50.90.80.4-0.4-1.0
One hour access (0.3 mA shock)0.10.20.50.7-0.20.20.0
One hour access (shock baseline)0.30.30.50.7-0.60.60.5
Number of responses in last shaping day0.20.30.40.2-0.50.50.7
Context. condit. distance diff. score2.02.53.1-1.41.8-1.8-1.4
Locomotion velocity, session 10.30.30.8-0.90.4-0.40.5
Locomotion distance, session 11.01.33.4-1.80.0-0.01.3
Locomotion velocity, session 21.41.73.0-1.6-0.80.81.7
Locomotion distance, session 22.84.18.6-1.6-1.61.62.9
Locomotion velocity, session 31.41.72.01.0-1.41.41.3
Locomotion distance, session 30.50.61.50.0-0.60.61.2
Stereotopy head waving bouts, day 36.07.19.83.1-2.92.91.4
Stereotopy head waving duration, day 33.94.76.22.5-2.42.41.0
Locomotion velocity, session 70.60.72.5-1.60.1-0.10.6
Locomotion distance, session 70.20.31.0-1.00.0-0.00.5
Stereotopy head waving bouts, day 72.83.16.91.11.5-1.5-2.6
Stereotopy head waving duration, day 71.92.35.01.70.8-0.8-2.2
Locomotion velocity, session 80.91.12.2-1.51.1-1.1-0.2
Locomotion distance, session 80.81.13.6-1.90.6-0.60.4
Degree of sensitization distance0.70.71.2-1.10.7-0.7-0.8
Degree of sensitization stereotypy5.96.510.0-0.62.8-2.8-3.2
Condit. Reinf. active minus inactive responses0.60.70.90.3-1.01.00.8
Condit. Reinf. active-inactive response ratio1.01.11.7-0.9-1.01.01.3
Condit. Reinf. active responses0.30.40.60.4-0.80.80.6
Condit. Reinf. inactive responses0.30.31.21.1-0.10.1-0.3
Incentive salience index mean1.21.42.3-0.2-1.31.31.5
Condit. Reinf. lever presses1.21.63.1-0.7-1.21.21.8
Time in familiar zone, hab. session 12.62.54.82.00.8-0.8-2.2
Time in novel zone, hab. session 12.82.76.2-1.6-1.01.02.5
Total zone transitions, hab. session 10.70.93.0-1.70.4-0.40.6
Total locomotion distance, hab. session 10.50.72.2-1.50.2-0.20.8
Locomotion velocity, hab. session 10.81.23.7-1.90.7-0.70.3
Time in familiar zone, hab. session 21.11.21.7-0.41.3-1.3-1.0
Time in novel zone, hab. session 20.70.70.9-0.5-0.90.91.0
Total zone transitions, hab. session 21.01.32.5-1.3-0.70.71.6
Total locomotion distance, hab. session 20.60.81.7-0.9-0.50.51.3
Locomotion velocity, hab. session 20.50.71.5-1.0-0.50.51.2
Novel to familiar place preference ratio1.21.31.9-1.41.1-1.1-0.9
Novelty place preference0.60.61.4-1.20.7-0.7-0.5
Time in novel zone, NPP test0.50.51.4-1.20.5-0.5-0.3
Total zone transitions, NPP test3.65.211.3-2.0-1.61.63.4
Total locomotion distance, NPP test2.12.96.6-1.0-1.41.42.6
Locomotion velocity, NPP test1.92.76.1-1.1-1.31.32.5
Pavlov. Cond. lever latency0.81.12.31.50.5-0.5-1.2
Pavlov. Cond. magazine entry latency0.60.81.9-1.4-0.40.40.9
Pavlov. Cond. change in total contacts0.30.40.7-0.9-0.30.30.7
Pavlov. Cond. index score0.70.92.8-1.7-0.30.30.9
Pavlov. Cond. latency score0.91.22.6-1.6-0.50.51.2
Pavlov. Cond. lever contacts0.80.93.3-1.80.1-0.10.6
Pavlov. Cond. magazine entry number0.30.31.21.1-0.10.1-0.3
Pavlov. Cond. intertrial magazine entries0.50.62.11.50.0-0.0-0.7
Pavlov. Cond. lever-magazine prob. diff.0.70.92.9-1.7-0.10.10.8
Pavlov. Cond. response bias0.20.20.7-0.8-0.00.00.4
Bone: apparent density0.20.30.50.10.5-0.5-0.7
Bone surface0.10.20.70.80.1-0.1-0.3
Bone volume0.10.10.20.40.3-0.3-0.3
Bone: connectivity density1.01.52.5-0.01.3-1.3-1.6
Bone: cortical apparent density1.31.72.3-0.71.5-1.5-1.3
Bone: cortical area0.71.13.2-1.80.8-0.80.1
Bone: cortical porosity1.81.95.2-2.31.1-1.1-0.4
Bone: cortical porosity3.43.78.0-2.81.7-1.7-0.9
Bone: cortical thickness0.40.61.8-1.40.5-0.50.3
Bone: cortical thickness0.40.40.6-0.80.8-0.8-0.1
Bone: cortical tissue density1.31.62.2-0.71.5-1.5-1.3
Bone: elastic displacement1.11.23.5-1.90.6-0.60.7
Bone: elastic work0.50.61.5-1.20.1-0.10.9
Bone: endosteal estimation0.20.50.8-0.1-0.80.80.9
Bone: endosteal perimeter0.30.62.1-1.50.1-0.10.5
Bone: final force0.50.70.80.7-0.90.90.9
Bone: final moment0.81.31.60.9-1.31.31.2
Bone: marrow area0.30.71.0-0.1-0.90.91.0
Bone: maximum diameter1.01.86.1-2.50.7-0.70.3
Bone: maximum force0.10.20.4-0.3-0.30.30.6
Bone: maximum moment0.20.40.7-0.2-0.60.60.9
Bone: minimum diameter0.10.30.5-0.70.5-0.5-0.3
Bone: periosteal estimation0.20.41.0-1.0-0.30.30.8
Bone: periosteal perimeter1.32.25.2-2.31.3-1.3-0.4
Bone: post-yield work0.30.40.80.9-0.70.70.2
Bone: stiffness0.00.00.10.10.1-0.1-0.3
Bone: tissue strength5.15.06.22.0-2.52.51.9
Bone: trabecular number1.01.62.40.01.4-1.4-1.5
Bone: trabecular spacing0.10.10.10.3-0.40.4-0.0
Bone: trabecular thickness0.20.30.40.2-0.50.50.6
Bone: trabecular tissue density0.50.72.0-1.4-0.40.40.8
Breakpoint value in progressive ratio session1.41.63.00.21.3-1.3-1.7
Distance traveled before self-admin1.01.11.8-1.3-0.90.91.0
Distance traveled after self-admin0.20.20.7-0.8-0.10.10.3
Delta time in closed arm before/after self-admin3.43.34.5-1.52.1-2.1-1.4
Delta time in open arm before/after self-admin0.20.20.6-0.80.2-0.2-0.3
Diff in mean of infusions in LGA sessions0.30.30.60.70.1-0.1-0.8
Extinction: sum of active levers before priming3.13.24.0-1.82.0-2.0-1.2
Active lever presses in extinction session 61.51.51.7-1.31.3-1.3-1.0
Delta distance traveled before/after self-admin1.11.21.7-0.11.3-1.3-1.1
Delta ambulatory time before/after self-admin0.80.81.20.31.1-1.1-0.9
Time in closed arm before self-admin3.13.54.31.8-2.12.11.4
Time in closed arm after self-admin0.00.00.10.2-0.00.00.2
Time in open arm before self-admin0.10.20.2-0.00.5-0.5-0.4
Time in open arm after self-admin1.82.02.4-1.01.5-1.5-1.6
Sum of active levers in priming session hrs 5-61.11.02.6-1.60.9-0.9-0.4
Time to tail flick, vehicle, before self-admin0.60.61.11.1-0.70.70.3
Time to tail flick, vehicle, after self-admin0.20.20.7-0.2-0.30.30.8
Time to tail flick, test, before self-admin1.00.92.81.7-0.70.70.2
Time to tail flick, test, after self-admin5.35.57.11.7-2.72.72.2
Delta time to tail flick, vehicle, before/after SA0.30.30.7-0.80.2-0.20.5
Delta time to tail flick, test, before/after SA3.33.04.20.8-2.12.11.7
Ambulatory time before self-admin1.01.01.1-1.0-1.01.01.0
Ambulatory time after self-admin0.20.20.7-0.80.2-0.20.1
Total heroin consumption0.30.40.50.2-0.70.70.6
Area under the delay curve0.20.20.70.8-0.30.3-0.1
Delay disc. indifference point, 0s delay0.50.61.81.3-0.20.2-0.7
Delay disc. indifference point, 16s delay0.90.91.50.4-1.21.20.5
Delay disc. indifference point, 2s delay1.71.92.21.1-1.51.51.5
Delay disc. indifference point, 24s delay1.21.11.6-0.61.3-1.3-0.9
Delay disc. indifference point, 4s delay1.11.13.82.0-0.60.6-0.2
Delay disc. indifference point, 8s delay0.10.10.20.10.4-0.4-0.4
Delay discount exponential model param0.20.20.7-0.80.2-0.20.0
Delay discount hyperbolic model param0.30.30.9-1.00.4-0.4-0.2
Fecal boli incidents, locomotor time 11.11.22.2-0.3-1.11.11.5
Change in fecal boli incidents, locomotor task0.40.40.8-0.9-0.20.20.8
Time >=10cm from walls, locomotor time 10.20.20.4-0.70.4-0.4-0.1
Bouts of movement, locomotor time 11.51.61.81.3-1.31.31.1
Total resting periods, locomotor time 11.82.02.41.2-1.51.51.4
Rest time, locomotor task time 10.40.51.2-0.8-0.00.01.1
Distance moved, locomotor task time 10.20.20.60.30.1-0.1-0.8
Vertical activity count, locomotor time 11.01.01.80.11.0-1.0-1.4
Time >=10cm from walls, locomotor time 20.50.61.0-0.00.8-0.8-1.0
Bouts of movement, locomotor time 20.20.30.6-0.70.5-0.5-0.1
Total resting periods, locomotor time 20.10.10.4-0.60.2-0.20.3
Rest time, locomotor task time 20.10.10.4-0.4-0.00.00.7
Distance moved, locomotor task time 20.20.20.60.80.1-0.1-0.5
Vertical activity count, locomotor time 21.51.72.2-0.41.5-1.5-1.4
Weight adjusted by age0.70.81.5-0.3-0.90.91.2
Seeking ratio, delayed vs. immediate footshock9.510.913.5-2.53.7-3.7-3.2
Locomotion in novel chamber0.20.30.50.70.1-0.1-0.7
Locomotion in novel chamber post-restriction0.40.51.91.4-0.30.3-0.1
Progressive ratio0.30.40.8-0.8-0.30.30.9
Food seeking constrained by brief footshock0.20.30.5-0.40.7-0.7-0.1
Seeking ratio, punishment vs. effort0.10.20.30.60.3-0.3-0.5
Run reversals in cocaine runway, females0.60.60.80.9-0.90.90.4
Run reversals in cocaine runway, males0.40.40.7-0.2-0.70.70.8
Latency to leave start box in cocaine runway1.21.42.40.81.1-1.1-1.6
Latency to leave start box in cocaine runway, F0.80.91.90.90.7-0.7-1.4
Latency to leave start box in cocaine runway, M0.50.50.60.60.7-0.7-0.8
Cd content in liver0.00.00.1-0.0-0.20.2-0.1
Co content in liver1.21.42.1-1.01.5-1.5-0.6
Cu content in liver1.21.43.71.9-1.01.00.4
Fe content in liver1.11.32.21.5-1.11.10.7
K content in liver0.40.40.50.3-0.70.70.6
Mg content in liver0.30.40.5-0.1-0.70.70.7
Mn content in liver0.40.41.4-1.20.3-0.30.1
Na content in liver0.10.10.2-0.2-0.50.50.1
Rb content in liver0.81.01.30.8-1.11.10.9
Se content in liver0.20.30.91.0-0.20.2-0.2
Sr content in liver0.40.40.90.9-0.60.60.1
Zn content in liver0.50.51.40.0-0.60.61.2