Slc1a7

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 PL alternative polyA ENSRNOT00000016557 0.05 0.04 5.9e-03 -0 0.01 0.01 0 3.6e-01 6.9e-02 8.1e-02 3.3e-01
2 PL alternative polyA ENSRNOT00000016557 0.06 0.04 1.2e-03 0.01 0.03 0.01 0.02 2.3e-02 2.9e-03 3.1e-02 1.5e-02
3 PL alternative polyA ENSRNOT00000077808 0.06 0.04 1.1e-03 0.01 0.03 0.01 0.02 2.2e-02 2.8e-03 2.9e-02 1.7e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail1.03.43.6-1.7-1.91.9
BMI without tail0.00.00.0-0.10.1-0.1
Body weight0.83.53.6-1.8-1.91.9
Epididymis fat weight0.10.30.30.40.5-0.5
Glucose0.00.00.0-0.00.1-0.1
Heart weight1.31.82.0-1.3-1.41.4
Left kidney weight9.527.327.8-5.1-5.35.3
Right kidney weight6.719.020.2-4.1-4.54.5
Tail length0.30.81.00.71.0-1.0
Length with tail0.00.00.0-0.2-0.20.2
Length without tail0.61.31.5-0.9-1.21.2
Liver weight, left0.50.70.8-0.8-0.90.9
Liver weight, right0.00.10.1-0.2-0.30.3
Parametrial fat weight0.10.20.40.60.4-0.4
Retroperitoneal fat weight0.20.71.11.00.7-0.7
Intraocular pressure0.10.10.1-0.2-0.30.3
Extensor digitorum longus weight1.55.96.2-2.3-2.52.5
Soleus weight2.98.48.5-2.9-2.92.9
Tibialis anterior weight4.816.617.9-3.8-4.24.2
Tibia length0.10.30.3-0.5-0.60.6
Number of licking bursts0.10.20.3-0.1-0.50.5
Food consumed during 24 hour testing period0.20.20.5-0.7-0.30.3
Times rat made contact with spout0.50.61.0-1.0-0.60.6
Mean time between licks in bursts1.21.72.01.11.4-1.4
Mean num. licks in bursts0.50.61.2-1.1-0.50.5
Std. dev. time between licks in bursts3.94.64.72.22.1-2.1
Water consumed over 24 hours1.61.93.5-1.9-1.11.1
Indifference point 0 sec0.61.01.4-1.2-0.90.9
Indifference point AUC0.00.00.0-0.10.2-0.2
Indifference point function ln k0.50.60.7-0.8-0.80.8
Indifference point function log k0.50.60.7-0.8-0.80.8
Delay discounting total patch changes 0 sec0.50.81.1-1.1-0.80.8
Delay discounting total patch changes 12 sec1.11.41.61.01.3-1.3
Delay discounting total patch changes 18 sec0.30.50.6-0.8-0.60.6
Delay discounting total patch changes 24 sec0.60.80.8-0.8-0.90.9
Delay discounting total patch changes 6 sec0.20.30.8-0.9-0.40.4
Delay discounting time to switch 0 sec2.53.85.12.31.8-1.8
Delay discounting water rate 0 sec2.74.34.7-2.2-2.02.0
Delay discounting water rate 12 sec4.36.57.5-2.7-2.42.4
Delay discounting water rate 18 sec0.00.00.10.30.0-0.0
Delay discounting water rate 24 sec0.10.10.2-0.3-0.40.4
Delay discounting water rate 6 sec1.21.81.9-1.2-1.41.4
Locomotor activity0.00.00.0-0.20.1-0.2
Locomotor testing distance0.30.61.2-1.1-0.50.5
Locomotor testing rearing0.20.30.7-0.8-0.20.2
Light reinforcement 10.10.20.3-0.3-0.50.5
Light reinforcement 21.62.12.2-1.4-1.51.5
Reaction time number correct0.00.00.0-0.0-0.10.2
Reaction time mean minus median0.50.60.80.60.9-0.9
Reaction time mean minus median AUC0.30.40.50.40.7-0.7
Reaction time num false alarms0.60.91.0-1.0-0.90.9
Reaction time num false alarms AUC1.31.92.3-1.5-1.31.3
Reaction time trials correct on left0.00.00.0-0.0-0.10.2
Reaction time trials on left0.00.00.0-0.0-0.10.1
Reaction time mean1.21.61.71.31.2-1.3
Reaction time mean AUC1.41.92.01.41.3-1.4
Median of all reaction times1.62.12.61.61.4-1.4
Reaction time omissions0.40.60.70.60.8-0.8
Reaction time false alarm rate1.31.82.3-1.5-1.31.3
Reaction time premature initiation rate0.20.20.30.30.6-0.6
Reaction time premature initiations0.20.30.40.40.6-0.6
Std. dev. reaction times0.30.40.60.40.7-0.8
Reaction time trials completed0.00.00.0-0.0-0.10.1
Reaction time trials AUC0.10.10.1-0.2-0.30.3
Social response proportion0.70.70.80.80.9-0.9
Social responses2.02.62.71.51.6-1.7
Social time0.00.00.1-0.3-0.10.1
Conditioned locomotion0.10.10.10.1-0.30.3
Cocaine response after cond. corrected2.52.83.5-1.9-1.61.6
Cocaine response after cond. not corrected4.04.45.4-2.3-2.02.0
Cocaine response before conditioning0.20.30.3-0.6-0.50.5
Saline control response0.20.30.8-0.9-0.30.3
Condit. Reinf. active minus inactive responses0.70.91.7-1.3-0.70.7
Condit. Reinf. active-inactive response ratio0.60.61.4-1.2-0.40.5
Condit. Reinf. active responses0.60.81.3-1.2-0.70.7
Condit. Reinf. inactive responses0.20.30.4-0.3-0.60.6
Condit. Reinf. lever presses0.10.20.30.10.5-0.5
Condit. Reinf. lever reinforcers received0.40.61.0-1.0-0.60.6
Pavlov. Cond. lever latency0.10.20.3-0.1-0.50.5
Pavlov. Cond. magazine entry latency1.31.52.00.81.4-1.4
Pavlov. Cond. change in total contacts0.20.30.40.10.6-0.6
Pavlov. Cond. index score0.70.91.20.51.1-1.1
Pavlov. Cond. latency score0.50.70.90.41.0-1.0
Pavlov. Cond. lever contacts0.10.10.1-0.10.4-0.4
Pavlov. Cond. magazine entry number2.42.93.5-1.3-1.91.9
Pavlov. Cond. intertrial magazine entries0.10.10.40.70.0-0.0
Pavlov. Cond. lever-magazine prob. diff.0.71.01.30.51.1-1.1
Pavlov. Cond. response bias0.60.81.10.51.0-1.1
Conditioned reinforcement - actives3.02.93.4-1.8-1.61.6
Conditioned reinforcement - inactives0.30.40.4-0.6-0.60.6
Conditioned locomotion1.21.42.0-1.4-1.11.1
Intermittent access intake day 1-15 change1.81.82.0-1.4-1.31.3
Intermittent access intake escalation1.51.51.9-1.4-1.11.1
Intermittent access intake escalation 20.10.10.2-0.5-0.20.2
Intermitt. access day 1 inactive lever presses2.32.52.6-1.6-1.51.6
Intermitt. access day 15 inactive lever presses0.60.70.8-0.6-0.90.9
Intermitt. access escalation Index0.40.40.5-0.3-0.70.7
Intermittent access day 1 total infusions0.20.20.2-0.3-0.50.5
Intermittent access day 15 total infusions1.41.61.7-1.2-1.31.3
Intermittent access terminal intake (last 3 days)0.50.50.5-0.7-0.70.7
Intermittent access total infusions0.80.80.9-0.9-0.90.9
Intermittent access day 1 locomotion0.60.60.7-0.6-0.80.8
Intermittent access day 15 total locomotion0.20.20.2-0.4-0.40.4
Intermittent access total locomotion0.70.80.9-0.8-0.90.9
Intermittent access standard deviation4.54.75.0-2.2-2.22.2
Cocaine induced anxiety0.10.10.2-0.1-0.40.4
Post-drug Anxiety0.20.20.50.70.3-0.3
Baseline Anxiety0.00.00.0-0.1-0.10.1
Lifetime Intake0.80.90.9-0.9-1.01.0
Incentive Sensitization - Responses0.00.00.0-0.0-0.10.1
Incentive Sensitization - Breakpoint0.10.10.1-0.2-0.30.3
Progressive ratio test 1 active lever presses0.30.30.4-0.6-0.60.6
Progressive ratio test 1 breakpoint0.60.60.6-0.8-0.80.8
Progressive ratio test 1 inactive lever presses1.31.41.6-1.3-1.11.2
Progressive ratio test 2 active lever presses1.31.41.6-1.3-1.21.2
Progressive ratio test 2 breakpoint1.31.51.5-1.2-1.21.2
Progressive ratio test 2 inactive lever presses1.31.51.6-1.1-1.31.3
Total sessions with >9 infusions0.10.10.20.40.4-0.4
Short access day 1 total inactive lever presses5.15.76.1-2.2-2.52.5
Short access day 10 total inactive lever presses2.73.03.1-1.8-1.71.7
Short access day 1 total infusions0.30.30.4-0.2-0.60.6
Short access day 10 total infusions0.70.80.9-0.8-1.01.0
Short access total infusions0.70.80.9-0.7-0.90.9
Short access day 1 locomotion2.32.52.5-1.5-1.61.6
Short access day 10 total locomotion1.31.41.4-1.1-1.21.2
Short access total locomotion0.50.50.5-0.7-0.70.7
Compulsive drug intake0.10.10.10.40.4-0.4
One hour access (0.3 mA shock)0.10.10.10.30.3-0.3
One hour access (shock baseline)0.40.50.5-0.7-0.70.7
Number of responses in last shaping day2.42.52.7-1.4-1.61.6
Context. condit. distance diff. score0.00.00.10.10.2-0.2
Locomotion velocity, session 12.73.03.51.91.6-1.6
Locomotion distance, session 10.00.00.00.20.0-0.0
Locomotion velocity, session 22.63.13.71.91.7-1.7
Locomotion distance, session 20.60.81.0-1.0-0.80.8
Locomotion velocity, session 30.40.50.50.70.7-0.7
Locomotion distance, session 30.20.20.4-0.6-0.30.3
Stereotopy head waving bouts, day 30.00.00.10.4-0.00.0
Stereotopy head waving duration, day 30.10.10.40.60.2-0.2
Locomotion velocity, session 70.00.00.0-0.20.1-0.1
Locomotion distance, session 70.10.10.4-0.60.0-0.0
Stereotopy head waving bouts, day 71.21.41.81.31.1-1.1
Stereotopy head waving duration, day 71.92.32.91.71.4-1.4
Locomotion velocity, session 81.61.91.91.31.4-1.4
Locomotion distance, session 80.10.20.4-0.6-0.30.3
Degree of sensitization distance0.10.10.2-0.4-0.20.2
Degree of sensitization stereotypy0.91.01.21.10.9-0.9
Condit. Reinf. active minus inactive responses0.91.01.2-1.1-0.90.9
Condit. Reinf. active-inactive response ratio1.21.31.7-1.3-1.11.1
Condit. Reinf. active responses1.01.21.3-1.0-1.11.1
Condit. Reinf. inactive responses0.10.10.20.40.1-0.1
Incentive salience index mean2.42.93.1-1.8-1.71.7
Condit. Reinf. lever presses1.92.62.6-1.6-1.61.6
Time in familiar zone, hab. session 10.20.20.20.40.4-0.4
Time in novel zone, hab. session 10.00.00.0-0.20.2-0.2
Total zone transitions, hab. session 10.00.10.20.40.1-0.1
Total locomotion distance, hab. session 10.30.50.6-0.4-0.80.8
Locomotion velocity, hab. session 10.10.20.2-0.0-0.50.5
Time in familiar zone, hab. session 20.40.40.60.20.7-0.7
Time in novel zone, hab. session 20.10.20.2-0.3-0.40.4
Total zone transitions, hab. session 20.10.10.1-0.4-0.20.2
Total locomotion distance, hab. session 20.50.70.7-0.8-0.80.8
Locomotion velocity, hab. session 20.60.80.8-0.8-0.90.9
Novel to familiar place preference ratio0.60.70.8-0.9-0.80.8
Novelty place preference0.30.30.3-0.6-0.50.5
Time in novel zone, NPP test0.10.10.2-0.4-0.40.4
Total zone transitions, NPP test0.81.21.4-0.9-1.21.2
Total locomotion distance, NPP test1.21.71.8-1.2-1.31.4
Locomotion velocity, NPP test1.82.62.8-1.5-1.71.7
Pavlov. Cond. lever latency2.33.03.21.61.8-1.8
Pavlov. Cond. magazine entry latency0.30.30.40.50.6-0.6
Pavlov. Cond. change in total contacts0.00.00.00.0-0.10.1
Pavlov. Cond. index score0.40.50.5-0.6-0.70.7
Pavlov. Cond. latency score0.40.60.6-0.6-0.80.8
Pavlov. Cond. lever contacts1.72.02.3-1.1-1.51.5
Pavlov. Cond. magazine entry number0.20.30.3-0.6-0.50.5
Pavlov. Cond. intertrial magazine entries0.20.30.3-0.5-0.60.5
Pavlov. Cond. lever-magazine prob. diff.0.40.50.6-0.7-0.80.8
Pavlov. Cond. response bias0.10.20.2-0.4-0.40.4
Bone: apparent density0.30.60.70.60.8-0.8
Bone surface0.20.30.40.30.6-0.6
Bone volume0.00.00.10.00.3-0.2
Bone: connectivity density0.71.21.50.81.2-1.2
Bone: cortical apparent density1.82.32.71.61.5-1.5
Bone: cortical area1.31.92.3-1.5-1.31.3
Bone: cortical porosity0.10.10.40.70.1-0.1
Bone: cortical porosity0.50.51.11.00.5-0.5
Bone: cortical thickness2.64.34.6-2.0-2.12.1
Bone: cortical thickness1.82.12.3-1.4-1.51.5
Bone: cortical tissue density1.92.42.81.71.5-1.5
Bone: elastic displacement0.50.60.7-0.8-0.70.8
Bone: elastic work0.70.91.2-1.1-0.80.8
Bone: endosteal estimation0.10.10.2-0.10.4-0.4
Bone: endosteal perimeter0.30.60.80.50.9-0.9
Bone: final force0.00.10.10.20.2-0.3
Bone: final moment0.00.00.0-0.00.1-0.1
Bone: marrow area0.00.10.1-0.20.3-0.3
Bone: maximum diameter0.00.10.1-0.3-0.30.3
Bone: maximum force0.00.00.1-0.3-0.00.0
Bone: maximum moment0.10.10.3-0.6-0.20.2
Bone: minimum diameter0.50.91.9-1.4-0.70.7
Bone: periosteal estimation0.30.71.1-1.0-0.70.7
Bone: periosteal perimeter0.00.00.1-0.3-0.00.0
Bone: post-yield work0.00.10.10.00.3-0.3
Bone: stiffness0.00.00.00.20.2-0.2
Bone: tissue strength0.40.40.50.20.7-0.7
Bone: trabecular number0.60.91.10.71.0-1.0
Bone: trabecular spacing0.81.11.4-0.6-1.21.2
Bone: trabecular thickness0.70.81.00.61.0-1.0
Bone: trabecular tissue density0.20.30.60.80.4-0.4
Breakpoint value in progressive ratio session0.30.40.40.60.6-0.6
Distance traveled before self-admin0.50.50.6-0.8-0.70.7
Distance traveled after self-admin3.94.34.6-2.1-2.02.0
Delta time in closed arm before/after self-admin1.21.21.8-1.3-0.90.9
Delta time in open arm before/after self-admin0.20.20.20.50.4-0.4
Diff in mean of infusions in LGA sessions0.00.00.10.10.2-0.2
Extinction: sum of active levers before priming0.00.00.10.30.0-0.0
Active lever presses in extinction session 61.61.52.0-1.4-1.11.1
Delta distance traveled before/after self-admin3.13.33.3-1.8-1.81.8
Delta ambulatory time before/after self-admin2.12.22.3-1.5-1.51.5
Time in closed arm before self-admin1.11.31.61.31.0-1.0
Time in closed arm after self-admin0.00.00.00.0-0.10.1
Time in open arm before self-admin0.00.00.1-0.10.2-0.2
Time in open arm after self-admin0.00.00.1-0.3-0.10.1
Sum of active levers in priming session hrs 5-60.00.00.0-0.1-0.10.1
Time to tail flick, vehicle, before self-admin0.80.81.0-0.7-1.01.0
Time to tail flick, vehicle, after self-admin0.40.40.6-0.3-0.80.8
Time to tail flick, test, before self-admin1.51.51.9-0.8-1.41.4
Time to tail flick, test, after self-admin1.11.11.3-0.9-1.11.1
Delta time to tail flick, vehicle, before/after SA0.00.00.1-0.1-0.20.2
Delta time to tail flick, test, before/after SA0.20.20.30.30.5-0.5
Ambulatory time before self-admin0.70.70.9-1.0-0.80.8
Ambulatory time after self-admin3.13.43.6-1.9-1.81.8
Total heroin consumption3.03.63.92.01.9-1.9
Area under the delay curve0.30.30.30.60.5-0.5
Delay disc. indifference point, 0s delay1.21.31.31.11.1-1.2
Delay disc. indifference point, 16s delay1.01.01.1-1.0-1.01.0
Delay disc. indifference point, 2s delay0.60.60.90.90.7-0.7
Delay disc. indifference point, 24s delay0.30.30.30.60.6-0.6
Delay disc. indifference point, 4s delay0.10.10.30.50.3-0.3
Delay disc. indifference point, 8s delay0.00.00.00.10.2-0.2
Delay discount exponential model param0.30.30.3-0.6-0.50.5
Delay discount hyperbolic model param0.40.40.5-0.7-0.60.6
Fecal boli incidents, locomotor time 10.00.00.0-0.20.1-0.1
Change in fecal boli incidents, locomotor task1.11.01.21.11.0-1.0
Time >=10cm from walls, locomotor time 10.30.30.40.50.6-0.6
Bouts of movement, locomotor time 11.21.41.41.21.2-1.2
Total resting periods, locomotor time 11.01.11.21.11.0-1.0
Rest time, locomotor task time 10.30.30.30.40.6-0.6
Distance moved, locomotor task time 10.00.00.00.1-0.10.1
Vertical activity count, locomotor time 10.30.40.4-0.5-0.60.6
Time >=10cm from walls, locomotor time 20.40.40.6-0.8-0.50.6
Bouts of movement, locomotor time 20.70.71.21.10.7-0.7
Total resting periods, locomotor time 20.80.81.31.10.8-0.8
Rest time, locomotor task time 20.60.71.01.00.8-0.8
Distance moved, locomotor task time 21.92.22.8-1.7-1.41.4
Vertical activity count, locomotor time 23.03.24.2-2.0-1.71.7
Weight adjusted by age0.20.20.3-0.0-0.60.6
Seeking ratio, delayed vs. immediate footshock4.14.65.5-2.4-2.02.1
Locomotion in novel chamber1.82.22.3-1.5-1.51.5
Locomotion in novel chamber post-restriction0.40.50.6-0.5-0.80.8
Progressive ratio0.00.00.10.1-0.20.2
Food seeking constrained by brief footshock2.32.83.21.41.8-1.8
Seeking ratio, punishment vs. effort1.62.02.41.11.6-1.5
Run reversals in cocaine runway, females0.90.91.21.10.9-0.9
Run reversals in cocaine runway, males2.12.02.5-1.6-1.41.3
Latency to leave start box in cocaine runway1.41.61.7-1.1-1.31.3
Latency to leave start box in cocaine runway, F1.92.12.4-1.2-1.51.5
Latency to leave start box in cocaine runway, M0.00.00.1-0.3-0.10.1
Cd content in liver0.10.10.20.20.4-0.4
Co content in liver0.20.20.40.20.6-0.6
Cu content in liver0.10.10.2-0.20.4-0.4
Fe content in liver1.01.11.3-0.9-1.11.1
K content in liver1.41.41.71.01.3-1.3
Mg content in liver0.10.10.10.10.3-0.3
Mn content in liver0.00.00.10.30.1-0.1
Na content in liver0.80.91.10.71.1-1.1
Rb content in liver0.10.10.10.30.3-0.3
Se content in liver0.10.10.1-0.10.4-0.4
Sr content in liver0.00.00.1-0.2-0.10.2
Zn content in liver0.50.50.70.50.8-0.8