Trmt61a

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 BLA mRNA stability ENSRNOG00000011398 0.05 0.05 2.8e-03 0.05 0.04 0.05 0.04 1.4e-03 2.8e-03 1.8e-03 2.2e-03
2 IL mRNA stability ENSRNOG00000011398 0.11 0.1 5.6e-03 0.07 0.07 0.06 0.06 8.3e-03 8.4e-03 1.7e-02 1.3e-02
3 Liver gene expression ENSRNOG00000011398 0.05 0.04 3.4e-05 0.04 0.03 0.03 0.03 4.1e-05 7.5e-04 1.5e-04 1.8e-04
4 NAcc mRNA stability ENSRNOG00000011398 0.03 0.03 6.7e-03 0.03 0.02 0.03 0.02 5.4e-03 6.3e-03 5.0e-03 6.0e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail2.68.39.02.82.92.93.0
BMI without tail0.61.21.71.21.01.30.9
Body weight0.10.40.5-0.7-0.5-0.6-0.6
Epididymis fat weight4.711.012.03.23.53.33.3
Glucose0.81.21.5-1.2-1.1-1.2-0.9
Heart weight0.00.00.10.10.30.1-0.0
Left kidney weight0.61.82.4-1.4-1.1-1.4-1.5
Right kidney weight0.30.81.2-0.9-0.6-0.9-1.1
Tail length3.29.711.5-3.0-3.0-3.0-3.4
Length with tail4.215.616.2-4.0-3.8-4.0-4.0
Length without tail1.84.05.0-2.2-1.7-2.2-1.7
Liver weight, left3.25.26.6-2.1-2.3-2.1-2.6
Liver weight, right0.00.00.0-0.10.00.0-0.1
Parametrial fat weight0.00.00.00.2-0.10.10.0
Retroperitoneal fat weight0.20.71.01.00.80.80.8
Intraocular pressure0.10.10.20.20.30.30.4
Extensor digitorum longus weight5.823.324.2-4.8-4.8-4.8-4.9
Soleus weight0.00.00.10.10.30.10.1
Tibialis anterior weight0.31.11.2-1.1-1.0-1.0-1.1
Tibia length0.51.41.9-0.9-1.4-1.0-1.4
Number of licking bursts0.10.10.2-0.2-0.5-0.1-0.5
Food consumed during 24 hour testing period0.40.41.3-0.3-0.5-1.1-0.3
Times rat made contact with spout0.40.51.0-0.7-0.6-1.0-0.4
Mean time between licks in bursts0.71.01.41.21.10.71.0
Mean num. licks in bursts0.00.10.1-0.10.1-0.40.2
Std. dev. time between licks in bursts0.60.71.01.00.80.90.6
Water consumed over 24 hours2.93.54.0-2.0-2.0-1.8-1.6
Indifference point 0 sec3.35.46.7-2.6-1.9-2.4-2.3
Indifference point AUC2.63.13.5-1.9-1.9-1.8-1.5
Indifference point function ln k0.50.81.2-0.8-0.8-0.8-1.1
Indifference point function log k0.50.81.2-0.8-0.8-0.8-1.1
Delay discounting total patch changes 0 sec3.65.97.5-2.7-2.0-2.5-2.4
Delay discounting total patch changes 12 sec3.54.65.7-2.4-1.9-2.3-1.9
Delay discounting total patch changes 18 sec1.52.02.8-1.6-1.1-1.7-1.1
Delay discounting total patch changes 24 sec0.10.20.4-0.6-0.1-0.5-0.2
Delay discounting total patch changes 6 sec1.92.93.8-2.0-1.4-1.8-1.7
Delay discounting time to switch 0 sec11.717.819.14.44.14.24.2
Delay discounting water rate 0 sec19.330.734.5-5.9-5.2-5.6-5.5
Delay discounting water rate 12 sec9.914.816.0-4.0-3.7-3.7-4.0
Delay discounting water rate 18 sec5.16.87.4-2.7-2.4-2.5-2.7
Delay discounting water rate 24 sec4.05.65.9-2.4-2.3-2.2-2.4
Delay discounting water rate 6 sec4.97.28.0-2.8-2.4-2.7-2.8
Locomotor activity0.10.10.2-0.40.0-0.4-0.3
Locomotor testing distance0.30.50.8-0.9-0.3-0.8-0.6
Locomotor testing rearing1.42.23.41.11.81.31.6
Light reinforcement 10.00.00.10.10.30.00.3
Light reinforcement 21.52.02.91.71.21.51.2
Reaction time number correct3.14.55.3-2.3-1.9-2.2-2.0
Reaction time mean minus median0.10.20.30.60.30.50.2
Reaction time mean minus median AUC0.10.20.30.60.20.50.1
Reaction time num false alarms0.71.01.6-1.3-0.7-1.1-0.9
Reaction time num false alarms AUC1.21.72.2-1.5-1.1-1.4-1.3
Reaction time trials correct on left3.14.55.3-2.3-1.9-2.2-2.0
Reaction time trials on left3.14.45.2-2.3-1.9-2.2-2.0
Reaction time mean0.91.21.81.31.11.10.8
Reaction time mean AUC0.60.81.31.10.90.90.5
Median of all reaction times0.60.81.11.11.00.80.6
Reaction time omissions0.91.21.7-0.9-1.2-1.1-1.3
Reaction time false alarm rate0.10.10.1-0.4-0.1-0.3-0.3
Reaction time premature initiation rate0.81.11.2-1.0-1.1-1.1-1.0
Reaction time premature initiations2.63.74.0-2.0-1.9-2.0-1.8
Std. dev. reaction times0.40.51.01.00.50.80.3
Reaction time trials completed3.14.45.2-2.3-1.9-2.2-2.0
Reaction time trials AUC3.44.85.8-2.4-2.0-2.3-2.1
Social response proportion0.30.30.5-0.7-0.3-0.6-0.5
Social responses0.10.10.20.10.40.20.4
Social time0.91.11.4-1.0-1.0-1.0-1.2
Conditioned locomotion1.31.52.0-1.3-1.1-1.2-1.4
Cocaine response after cond. corrected0.70.71.50.90.71.20.4
Cocaine response after cond. not corrected1.82.02.21.51.51.41.3
Cocaine response before conditioning2.12.64.31.61.80.52.1
Saline control response0.20.20.40.50.3-0.60.3
Condit. Reinf. active minus inactive responses0.30.30.5-0.7-0.6-0.2-0.6
Condit. Reinf. active-inactive response ratio0.40.40.5-0.7-0.60.7-0.6
Condit. Reinf. active responses0.00.00.0-0.10.1-0.10.1
Condit. Reinf. inactive responses0.50.61.00.81.0-0.60.7
Condit. Reinf. lever presses1.31.82.41.51.50.61.4
Condit. Reinf. lever reinforcers received0.00.00.0-0.00.2-0.10.1
Pavlov. Cond. lever latency1.82.53.5-1.9-1.6-1.1-1.6
Pavlov. Cond. magazine entry latency4.55.26.12.52.41.72.5
Pavlov. Cond. change in total contacts3.65.16.22.42.51.82.2
Pavlov. Cond. index score4.76.17.12.72.61.92.6
Pavlov. Cond. latency score4.75.96.72.62.62.02.5
Pavlov. Cond. lever contacts2.43.45.02.21.91.31.8
Pavlov. Cond. magazine entry number3.94.85.7-2.2-2.4-1.9-2.2
Pavlov. Cond. intertrial magazine entries5.57.18.1-2.8-2.5-2.8-2.5
Pavlov. Cond. lever-magazine prob. diff.5.26.87.82.82.82.12.7
Pavlov. Cond. response bias3.34.66.22.52.31.52.1
Conditioned reinforcement - actives2.32.22.5-1.5-1.4-1.6-1.5
Conditioned reinforcement - inactives0.40.50.7-0.6-0.6-0.8-0.6
Conditioned locomotion0.60.70.90.90.90.30.9
Intermittent access intake day 1-15 change1.11.11.31.21.10.71.1
Intermittent access intake escalation1.41.41.61.31.21.01.3
Intermittent access intake escalation 20.10.10.20.40.20.10.3
Intermitt. access day 1 inactive lever presses2.52.73.1-1.8-1.6-1.5-1.6
Intermitt. access day 15 inactive lever presses0.80.91.3-1.0-0.9-0.8-1.1
Intermitt. access escalation Index0.20.20.3-0.6-0.4-0.1-0.3
Intermittent access day 1 total infusions0.40.40.50.70.70.60.7
Intermittent access day 15 total infusions1.72.02.41.41.51.11.5
Intermittent access terminal intake (last 3 days)1.51.62.41.31.60.71.4
Intermittent access total infusions0.70.81.00.81.00.71.0
Intermittent access day 1 locomotion0.80.81.11.01.00.11.0
Intermittent access day 15 total locomotion0.30.30.40.70.60.20.6
Intermittent access total locomotion0.40.40.60.70.70.20.8
Intermittent access standard deviation3.03.23.92.01.91.31.9
Cocaine induced anxiety2.93.33.7-1.9-1.9-1.6-1.9
Post-drug Anxiety2.52.82.9-1.7-1.7-1.6-1.7
Baseline Anxiety1.51.61.81.31.31.21.3
Lifetime Intake0.30.30.50.60.70.20.7
Incentive Sensitization - Responses0.20.20.70.10.20.80.1
Incentive Sensitization - Breakpoint0.20.20.6-0.00.10.80.0
Progressive ratio test 1 active lever presses0.00.00.10.10.2-0.40.1
Progressive ratio test 1 breakpoint0.10.10.10.20.4-0.30.2
Progressive ratio test 1 inactive lever presses2.72.93.2-1.8-1.7-1.5-1.8
Progressive ratio test 2 active lever presses0.10.10.30.00.20.50.1
Progressive ratio test 2 breakpoint0.00.00.10.00.20.40.1
Progressive ratio test 2 inactive lever presses0.80.91.2-1.1-0.9-0.7-1.0
Total sessions with >9 infusions0.10.10.10.10.2-0.40.3
Short access day 1 total inactive lever presses0.10.10.10.20.40.30.3
Short access day 10 total inactive lever presses0.30.30.4-0.6-0.60.1-0.6
Short access day 1 total infusions0.40.41.1-0.5-0.4-1.1-0.3
Short access day 10 total infusions0.30.30.60.60.80.20.7
Short access total infusions0.20.20.30.40.5-0.40.5
Short access day 1 locomotion0.60.60.90.71.0-0.20.9
Short access day 10 total locomotion0.50.50.80.80.9-0.00.9
Short access total locomotion0.20.20.60.20.3-0.80.4
Compulsive drug intake0.00.00.10.20.20.10.2
One hour access (0.3 mA shock)0.10.10.2-0.3-0.2-0.5-0.3
One hour access (shock baseline)0.00.00.00.10.1-0.20.2
Number of responses in last shaping day0.40.40.80.90.50.60.6
Context. condit. distance diff. score1.82.22.4-1.4-1.6-1.5-1.4
Locomotion velocity, session 10.30.30.7-0.4-0.9-0.5-0.5
Locomotion distance, session 10.30.40.60.80.40.60.7
Locomotion velocity, session 20.00.00.1-0.10.4-0.10.2
Locomotion distance, session 20.30.40.50.70.50.60.6
Locomotion velocity, session 30.20.20.30.40.50.30.6
Locomotion distance, session 30.00.00.0-0.0-0.1-0.2-0.1
Stereotopy head waving bouts, day 30.10.20.2-0.4-0.4-0.4-0.3
Stereotopy head waving duration, day 30.20.30.3-0.6-0.6-0.5-0.5
Locomotion velocity, session 70.30.30.50.50.60.40.7
Locomotion distance, session 70.81.01.11.00.91.01.0
Stereotopy head waving bouts, day 71.01.11.4-1.2-1.0-1.1-1.0
Stereotopy head waving duration, day 70.30.40.6-0.8-0.5-0.7-0.6
Locomotion velocity, session 80.20.30.3-0.5-0.4-0.6-0.5
Locomotion distance, session 80.00.00.10.3-0.10.10.1
Degree of sensitization distance0.10.10.20.30.30.30.4
Degree of sensitization stereotypy0.20.20.2-0.5-0.5-0.5-0.5
Condit. Reinf. active minus inactive responses0.50.60.70.80.70.80.8
Condit. Reinf. active-inactive response ratio2.62.83.01.71.61.71.7
Condit. Reinf. active responses0.20.20.20.40.50.40.5
Condit. Reinf. inactive responses1.82.22.4-1.4-1.5-1.5-1.4
Incentive salience index mean0.50.60.70.80.70.80.8
Condit. Reinf. lever presses0.10.20.30.30.30.30.6
Time in familiar zone, hab. session 10.50.50.70.50.80.60.9
Time in novel zone, hab. session 10.10.10.20.4-0.00.30.1
Total zone transitions, hab. session 10.50.70.90.90.60.90.9
Total locomotion distance, hab. session 10.00.00.1-0.2-0.2-0.1-0.2
Locomotion velocity, hab. session 10.40.60.7-0.8-0.8-0.7-0.8
Time in familiar zone, hab. session 20.60.61.00.50.90.71.0
Time in novel zone, hab. session 20.10.10.10.4-0.00.2-0.2
Total zone transitions, hab. session 20.60.81.11.10.70.90.9
Total locomotion distance, hab. session 20.40.60.8-0.6-0.8-0.7-0.9
Locomotion velocity, hab. session 20.60.91.1-0.8-1.0-0.9-1.0
Novel to familiar place preference ratio0.30.40.50.70.60.60.5
Novelty place preference0.20.20.30.50.50.50.3
Time in novel zone, NPP test0.20.20.30.50.40.40.3
Total zone transitions, NPP test0.10.10.30.50.20.40.3
Total locomotion distance, NPP test0.00.10.2-0.0-0.2-0.1-0.4
Locomotion velocity, NPP test0.10.10.2-0.1-0.3-0.2-0.5
Pavlov. Cond. lever latency0.81.01.0-0.9-1.0-1.0-1.0
Pavlov. Cond. magazine entry latency0.50.70.90.80.80.80.9
Pavlov. Cond. change in total contacts0.40.40.60.50.70.50.8
Pavlov. Cond. index score1.01.31.41.11.01.21.2
Pavlov. Cond. latency score0.60.81.00.90.80.91.0
Pavlov. Cond. lever contacts0.91.11.31.01.11.01.1
Pavlov. Cond. magazine entry number1.11.41.5-1.2-1.1-1.2-1.2
Pavlov. Cond. intertrial magazine entries5.86.97.0-2.6-2.6-2.7-2.6
Pavlov. Cond. lever-magazine prob. diff.0.70.91.01.00.81.01.0
Pavlov. Cond. response bias1.31.61.71.21.21.31.3
Bone: apparent density0.00.10.10.20.20.20.2
Bone surface0.00.10.10.3-0.00.30.2
Bone volume0.00.00.10.30.00.30.2
Bone: connectivity density0.00.00.1-0.3-0.2-0.3-0.1
Bone: cortical apparent density8.511.112.3-3.4-3.1-3.5-3.2
Bone: cortical area1.21.82.6-1.0-1.6-1.1-1.5
Bone: cortical porosity0.00.00.0-0.00.0-0.1-0.0
Bone: cortical porosity0.20.20.30.50.50.50.4
Bone: cortical thickness1.11.82.5-1.1-1.6-1.2-1.4
Bone: cortical thickness1.01.11.5-0.9-1.2-0.9-1.2
Bone: cortical tissue density8.611.212.4-3.5-3.1-3.5-3.2
Bone: elastic displacement0.70.80.9-0.8-0.9-0.8-0.9
Bone: elastic work0.20.20.4-0.3-0.6-0.3-0.5
Bone: endosteal estimation0.20.40.60.80.40.80.5
Bone: endosteal perimeter0.00.00.00.2-0.20.2-0.2
Bone: final force0.40.61.0-0.5-1.0-0.6-0.9
Bone: final moment0.40.71.2-0.5-1.1-0.6-1.0
Bone: marrow area0.20.30.50.70.40.70.5
Bone: maximum diameter0.10.10.3-0.1-0.6-0.1-0.5
Bone: maximum force0.40.61.0-0.5-1.0-0.6-0.9
Bone: maximum moment0.30.61.0-0.5-1.0-0.6-0.9
Bone: minimum diameter0.71.31.5-1.0-1.2-1.1-1.2
Bone: periosteal estimation0.20.30.6-0.2-0.8-0.3-0.7
Bone: periosteal perimeter0.10.20.4-0.1-0.6-0.1-0.6
Bone: post-yield work1.21.61.7-1.3-1.2-1.2-1.3
Bone: stiffness1.72.83.4-1.4-1.8-1.5-1.8
Bone: tissue strength0.10.10.2-0.2-0.5-0.2-0.3
Bone: trabecular number0.00.00.1-0.30.0-0.3-0.1
Bone: trabecular spacing0.10.10.10.30.10.4-0.1
Bone: trabecular thickness0.10.10.2-0.4-0.5-0.4-0.3
Bone: trabecular tissue density0.20.30.5-0.7-0.3-0.7-0.2
Breakpoint value in progressive ratio session0.00.00.10.30.0-0.20.3
Distance traveled before self-admin0.00.00.10.10.30.00.1
Distance traveled after self-admin0.50.60.7-0.8-0.7-0.6-0.8
Delta time in closed arm before/after self-admin0.10.10.20.30.30.5-0.0
Delta time in open arm before/after self-admin1.31.23.7-0.6-0.7-1.9-0.5
Diff in mean of infusions in LGA sessions0.00.00.2-0.1-0.10.0-0.4
Extinction: sum of active levers before priming0.00.00.00.1-0.00.10.1
Active lever presses in extinction session 61.31.21.4-1.0-1.1-1.2-1.1
Delta distance traveled before/after self-admin0.10.10.4-0.1-0.3-0.6-0.2
Delta ambulatory time before/after self-admin0.70.71.2-0.7-0.9-1.1-0.6
Time in closed arm before self-admin2.52.93.61.81.81.21.9
Time in closed arm after self-admin1.21.31.81.31.30.81.1
Time in open arm before self-admin4.34.55.9-2.4-2.3-1.1-2.4
Time in open arm after self-admin3.23.54.0-1.9-1.8-2.0-1.7
Sum of active levers in priming session hrs 5-60.30.30.70.50.40.50.8
Time to tail flick, vehicle, before self-admin0.70.71.2-0.7-0.81.1-0.6
Time to tail flick, vehicle, after self-admin0.10.10.20.30.5-0.20.5
Time to tail flick, test, before self-admin0.10.10.1-0.3-0.40.2-0.3
Time to tail flick, test, after self-admin1.41.51.9-1.3-1.4-0.7-1.3
Delta time to tail flick, vehicle, before/after SA0.40.41.40.10.3-1.20.2
Delta time to tail flick, test, before/after SA1.11.01.6-0.8-0.8-1.3-0.9
Ambulatory time before self-admin0.10.10.20.20.4-0.1-0.0
Ambulatory time after self-admin0.00.00.00.10.1-0.10.1
Total heroin consumption0.80.91.6-1.0-1.3-0.5-1.0
Area under the delay curve0.10.10.20.00.40.30.5
Delay disc. indifference point, 0s delay0.10.10.2-0.4-0.2-0.3-0.2
Delay disc. indifference point, 16s delay0.00.00.10.00.20.10.3
Delay disc. indifference point, 2s delay0.10.10.10.20.20.40.4
Delay disc. indifference point, 24s delay0.10.00.10.20.20.30.2
Delay disc. indifference point, 4s delay0.10.10.3-0.6-0.2-0.4-0.2
Delay disc. indifference point, 8s delay0.30.30.50.20.60.50.7
Delay discount exponential model param0.10.10.20.0-0.3-0.2-0.4
Delay discount hyperbolic model param0.10.10.2-0.0-0.3-0.3-0.4
Fecal boli incidents, locomotor time 11.71.92.71.61.01.51.3
Change in fecal boli incidents, locomotor task0.20.20.4-0.6-0.1-0.4-0.6
Time >=10cm from walls, locomotor time 10.40.40.60.60.70.80.6
Bouts of movement, locomotor time 11.11.21.51.20.81.21.1
Total resting periods, locomotor time 11.11.31.51.20.91.21.1
Rest time, locomotor task time 10.20.20.4-0.3-0.5-0.4-0.7
Distance moved, locomotor task time 10.40.50.80.30.80.50.9
Vertical activity count, locomotor time 10.50.60.9-1.0-0.7-0.8-0.5
Time >=10cm from walls, locomotor time 20.80.80.9-1.0-1.0-0.8-0.9
Bouts of movement, locomotor time 22.22.33.1-1.4-1.7-1.3-1.6
Total resting periods, locomotor time 21.61.72.1-1.2-1.5-1.1-1.4
Rest time, locomotor task time 20.30.30.6-0.5-0.6-0.4-0.7
Distance moved, locomotor task time 20.20.30.60.30.60.40.8
Vertical activity count, locomotor time 20.50.60.7-0.7-0.8-0.8-0.6
Weight adjusted by age0.00.00.0-0.2-0.10.0-0.0
Seeking ratio, delayed vs. immediate footshock0.30.30.6-0.5-0.8-0.6-0.2
Locomotion in novel chamber5.36.57.2-2.6-2.5-2.4-2.7
Locomotion in novel chamber post-restriction0.10.10.20.50.10.40.0
Progressive ratio0.40.50.7-0.6-0.8-0.7-0.6
Food seeking constrained by brief footshock2.02.43.0-1.4-1.7-1.5-1.6
Seeking ratio, punishment vs. effort0.10.10.2-0.4-0.3-0.3-0.4
Run reversals in cocaine runway, females1.21.21.71.01.31.01.0
Run reversals in cocaine runway, males1.01.01.2-0.9-1.0-1.0-1.1
Latency to leave start box in cocaine runway0.10.10.30.10.50.30.4
Latency to leave start box in cocaine runway, F0.10.10.30.10.50.20.5
Latency to leave start box in cocaine runway, M0.10.10.10.20.40.40.2
Cd content in liver0.80.91.8-0.5-0.8-1.4-0.8
Co content in liver0.91.01.4-1.0-1.0-0.8-1.2
Cu content in liver0.81.01.31.11.10.71.0
Fe content in liver0.10.10.20.30.30.30.4
K content in liver0.10.10.2-0.4-0.2-0.4-0.3
Mg content in liver0.10.10.1-0.4-0.1-0.1-0.3
Mn content in liver0.10.10.4-0.10.00.70.0
Na content in liver0.10.10.20.10.20.40.3
Rb content in liver0.50.61.1-1.0-0.7-0.2-1.0
Se content in liver0.10.10.20.50.1-0.50.2
Sr content in liver0.70.61.2-0.4-0.7-1.1-0.7
Zn content in liver0.30.40.6-0.4-0.6-0.8-0.5