Med16

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose mRNA stability ENSRNOG00000011315 0.14 0.09 5.3e-07 0.06 0.05 0.06 0.06 2.9e-07 1.4e-06 5.8e-07 4.9e-07
2 BLA intron excision ratio chr7:9799782:9800142 0.07 0.06 7.6e-03 0.01 0.02 0.03 0.01 7.9e-02 2.4e-02 7.8e-03 6.4e-02
3 Brain mRNA stability ENSRNOG00000011315 0.09 0.06 1.9e-05 0.02 0.06 0.06 0.06 7.1e-03 2.5e-06 5.1e-06 5.2e-06
4 Eye intron excision ratio chr7:9798774:9799620 0.23 0.15 2.7e-03 0.11 0.04 0.04 0.07 8.2e-03 7.7e-02 7.5e-02 3.6e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail2.68.620.11.22.8-2.24.5
BMI without tail0.91.94.51.70.30.02.1
Body weight0.52.05.40.81.2-0.92.3
Epididymis fat weight0.20.40.90.1-0.50.8-0.9
Glucose0.61.02.20.50.9-0.71.5
Heart weight0.30.40.80.6-0.10.9-0.7
Left kidney weight0.00.10.2-0.4-0.1-0.50.1
Right kidney weight0.61.83.2-0.1-1.71.1-1.8
Tail length1.95.78.70.3-2.92.4-3.0
Length with tail0.62.45.3-0.7-1.51.1-2.3
Length without tail0.40.81.7-1.30.7-0.9-0.1
Liver weight, left0.81.33.40.51.0-0.81.8
Liver weight, right0.81.33.0-0.20.9-1.21.7
Parametrial fat weight0.30.71.00.6-0.91.0-0.7
Retroperitoneal fat weight0.10.30.70.6-0.1-0.10.8
Intraocular pressure1.11.63.81.9-0.51.5-0.4
Extensor digitorum longus weight1.55.816.52.11.2-1.04.1
Soleus weight4.011.527.01.13.2-2.75.2
Tibialis anterior weight0.41.44.30.40.7-0.82.1
Tibia length0.51.42.80.0-1.21.1-1.7
Number of licking bursts1.11.32.51.6-1.31.1-0.0
Food consumed during 24 hour testing period0.40.50.91.0-0.5-0.00.8
Times rat made contact with spout0.91.12.51.6-1.10.70.3
Mean time between licks in bursts2.43.46.40.3-1.91.9-2.5
Mean num. licks in bursts0.10.10.1-0.20.4-0.40.2
Std. dev. time between licks in bursts0.30.30.6-0.3-0.70.3-0.8
Water consumed over 24 hours0.40.51.0-0.30.1-1.01.0
Indifference point 0 sec0.20.40.4-0.40.7-0.60.6
Indifference point AUC0.30.40.90.1-0.60.6-0.9
Indifference point function ln k0.10.20.30.60.20.10.5
Indifference point function log k0.10.20.30.60.20.10.5
Delay discounting total patch changes 0 sec0.10.10.3-0.10.4-0.40.5
Delay discounting total patch changes 12 sec0.10.20.40.60.20.10.6
Delay discounting total patch changes 18 sec0.40.51.3-0.2-0.60.7-1.1
Delay discounting total patch changes 24 sec0.10.10.1-0.40.4-0.2-0.2
Delay discounting total patch changes 6 sec0.00.10.2-0.2-0.1-0.0-0.4
Delay discounting time to switch 0 sec2.53.86.0-2.01.6-2.41.6
Delay discounting water rate 0 sec1.93.06.12.5-1.32.0-0.3
Delay discounting water rate 12 sec1.21.85.42.3-0.31.10.9
Delay discounting water rate 18 sec4.45.810.83.3-1.92.8-0.8
Delay discounting water rate 24 sec3.04.210.43.2-1.12.20.0
Delay discounting water rate 6 sec2.13.04.72.2-1.42.1-0.9
Locomotor activity1.11.83.3-1.8-0.6-0.0-1.8
Locomotor testing distance0.61.02.3-1.2-0.40.1-1.5
Locomotor testing rearing0.20.30.60.7-0.30.8-0.3
Light reinforcement 12.13.810.1-1.7-1.11.0-3.2
Light reinforcement 20.81.12.8-1.2-0.10.3-1.7
Reaction time number correct1.31.94.72.2-1.01.30.4
Reaction time mean minus median0.60.81.10.6-0.91.1-1.0
Reaction time mean minus median AUC0.20.20.4-0.60.1-0.50.2
Reaction time num false alarms0.50.71.81.3-0.31.00.1
Reaction time num false alarms AUC0.81.12.51.6-0.51.20.1
Reaction time trials correct on left1.31.94.72.2-1.01.30.4
Reaction time trials on left1.21.74.42.1-0.91.20.4
Reaction time mean0.10.10.2-0.10.4-0.40.2
Reaction time mean AUC0.10.20.3-0.20.5-0.50.3
Median of all reaction times0.40.50.8-0.40.9-0.90.7
Reaction time omissions0.10.10.2-0.3-0.2-0.2-0.5
Reaction time false alarm rate0.00.00.10.10.30.10.1
Reaction time premature initiation rate0.91.21.70.7-0.91.3-1.3
Reaction time premature initiations2.13.04.42.0-1.52.1-1.2
Std. dev. reaction times0.10.20.20.3-0.50.4-0.4
Reaction time trials completed1.21.74.42.1-0.91.20.4
Reaction time trials AUC1.62.25.62.4-1.11.40.3
Social response proportion0.40.41.0-1.0-0.2-0.3-0.7
Social responses2.32.97.3-1.2-1.41.0-2.7
Social time0.81.01.8-0.61.4-1.01.0
Conditioned locomotion0.70.92.31.50.10.51.0
Cocaine response after cond. corrected2.42.76.12.50.40.22.1
Cocaine response after cond. not corrected2.72.96.82.60.50.32.2
Cocaine response before conditioning0.20.20.5-0.2-0.30.4-0.7
Saline control response0.00.10.10.30.30.00.2
Condit. Reinf. active minus inactive responses2.12.63.61.0-1.51.9-1.9
Condit. Reinf. active-inactive response ratio0.60.71.41.2-0.11.0-0.5
Condit. Reinf. active responses1.62.23.30.7-1.51.6-1.8
Condit. Reinf. inactive responses1.01.22.20.4-1.51.1-1.2
Condit. Reinf. lever presses1.62.23.70.7-1.21.8-1.9
Condit. Reinf. lever reinforcers received1.62.33.21.1-1.41.8-1.6
Pavlov. Cond. lever latency0.30.50.8-0.30.5-0.80.9
Pavlov. Cond. magazine entry latency0.30.40.70.1-0.80.6-0.6
Pavlov. Cond. change in total contacts0.40.51.00.4-0.30.9-1.0
Pavlov. Cond. index score0.50.71.00.4-0.71.0-1.0
Pavlov. Cond. latency score0.30.40.70.2-0.60.7-0.9
Pavlov. Cond. lever contacts0.60.91.40.7-0.71.2-1.0
Pavlov. Cond. magazine entry number0.40.50.7-0.00.8-0.80.9
Pavlov. Cond. intertrial magazine entries0.30.41.11.1-0.50.50.4
Pavlov. Cond. lever-magazine prob. diff.0.40.50.90.2-0.70.8-0.9
Pavlov. Cond. response bias1.41.92.70.8-1.31.6-1.6
Conditioned reinforcement - actives0.70.72.0-0.4-0.50.7-1.4
Conditioned reinforcement - inactives0.20.20.30.60.50.20.5
Conditioned locomotion2.83.48.3-0.5-1.61.6-2.9
Intermittent access intake day 1-15 change3.53.56.90.1-1.91.9-2.6
Intermittent access intake escalation5.04.97.10.9-2.32.5-2.7
Intermittent access intake escalation 25.55.58.70.9-2.32.7-2.9
Intermitt. access day 1 inactive lever presses0.50.61.00.8-0.61.0-0.5
Intermitt. access day 15 inactive lever presses0.40.40.70.2-0.50.8-0.8
Intermitt. access escalation Index0.80.71.2-0.90.8-1.10.6
Intermittent access day 1 total infusions0.10.20.4-0.30.6-0.30.2
Intermittent access day 15 total infusions1.21.42.60.3-0.91.4-1.6
Intermittent access terminal intake (last 3 days)0.40.51.1-0.2-0.30.8-1.1
Intermittent access total infusions0.10.10.30.1-0.00.5-0.5
Intermittent access day 1 locomotion0.30.30.60.1-0.40.6-0.8
Intermittent access day 15 total locomotion1.71.84.3-0.1-1.11.3-2.1
Intermittent access total locomotion0.30.41.1-0.3-0.10.5-1.0
Intermittent access standard deviation2.02.23.30.6-1.51.7-1.8
Cocaine induced anxiety0.80.92.6-1.60.5-0.8-0.4
Post-drug Anxiety0.70.82.2-1.50.3-0.7-0.5
Baseline Anxiety0.91.01.31.0-1.11.2-0.6
Lifetime Intake0.00.00.1-0.10.10.2-0.3
Incentive Sensitization - Responses0.30.30.50.6-0.10.7-0.4
Incentive Sensitization - Breakpoint0.20.20.50.5-0.10.7-0.5
Progressive ratio test 1 active lever presses0.20.20.40.7-0.20.50.0
Progressive ratio test 1 breakpoint0.20.20.40.6-0.30.40.1
Progressive ratio test 1 inactive lever presses0.00.00.0-0.1-0.10.1-0.2
Progressive ratio test 2 active lever presses0.40.40.70.7-0.30.9-0.5
Progressive ratio test 2 breakpoint0.20.20.30.2-0.10.6-0.5
Progressive ratio test 2 inactive lever presses0.20.20.3-0.50.6-0.2-0.1
Total sessions with >9 infusions0.20.20.3-0.50.5-0.50.3
Short access day 1 total inactive lever presses0.10.10.2-0.4-0.1-0.0-0.3
Short access day 10 total inactive lever presses0.00.00.00.1-0.20.10.0
Short access day 1 total infusions0.50.51.3-1.20.5-0.6-0.2
Short access day 10 total infusions0.20.30.50.5-0.40.7-0.4
Short access total infusions0.10.10.1-0.30.3-0.20.1
Short access day 1 locomotion0.40.40.8-0.9-0.10.1-0.9
Short access day 10 total locomotion2.42.64.60.4-1.61.7-2.1
Short access total locomotion0.30.30.7-0.4-0.30.4-0.8
Compulsive drug intake1.31.31.9-0.61.1-1.41.4
One hour access (0.3 mA shock)0.10.10.30.20.5-0.10.3
One hour access (shock baseline)0.50.61.20.9-0.31.1-0.6
Number of responses in last shaping day0.10.10.1-0.20.10.2-0.4
Context. condit. distance diff. score0.20.30.50.4-0.70.20.6
Locomotion velocity, session 10.90.92.3-1.50.7-0.8-0.5
Locomotion distance, session 12.43.17.9-2.81.0-1.90.1
Locomotion velocity, session 22.32.67.1-2.7-0.5-0.5-1.7
Locomotion distance, session 22.43.48.9-3.01.1-1.6-1.0
Locomotion velocity, session 34.24.88.20.2-2.52.2-2.9
Locomotion distance, session 30.20.20.40.6-0.50.60.0
Stereotopy head waving bouts, day 32.32.85.4-0.9-2.01.0-2.3
Stereotopy head waving duration, day 33.03.77.1-0.6-2.31.4-2.7
Locomotion velocity, session 71.01.12.70.5-1.71.0-0.7
Locomotion distance, session 70.81.02.41.6-0.80.90.2
Stereotopy head waving bouts, day 70.60.71.8-1.30.4-0.80.1
Stereotopy head waving duration, day 70.70.92.6-1.60.3-0.8-0.2
Locomotion velocity, session 81.01.23.7-1.9-0.3-0.9-0.4
Locomotion distance, session 80.30.41.4-1.2-0.2-0.5-0.2
Degree of sensitization distance0.10.20.40.2-0.1-0.30.7
Degree of sensitization stereotypy1.92.12.7-0.91.6-1.51.6
Condit. Reinf. active minus inactive responses2.32.65.1-0.4-1.71.4-2.3
Condit. Reinf. active-inactive response ratio1.71.93.00.6-1.21.6-1.7
Condit. Reinf. active responses1.51.94.0-1.7-0.80.4-2.0
Condit. Reinf. inactive responses1.51.85.2-2.30.6-1.0-0.7
Incentive salience index mean1.01.22.3-1.3-0.80.3-1.5
Condit. Reinf. lever presses2.53.47.5-2.71.5-2.00.3
Time in familiar zone, hab. session 12.01.92.80.8-1.31.5-1.7
Time in novel zone, hab. session 11.71.72.2-1.11.3-1.51.3
Total zone transitions, hab. session 11.01.33.9-2.00.3-0.9-0.8
Total locomotion distance, hab. session 11.52.26.6-2.60.3-1.2-0.7
Locomotion velocity, hab. session 11.41.95.8-2.4-0.1-0.9-1.0
Time in familiar zone, hab. session 24.54.77.80.9-2.12.4-2.8
Time in novel zone, hab. session 23.33.45.8-0.81.5-2.12.4
Total zone transitions, hab. session 23.34.38.3-2.91.5-2.50.7
Total locomotion distance, hab. session 21.41.85.5-2.30.1-1.1-0.8
Locomotion velocity, hab. session 21.92.67.6-2.80.3-1.5-0.7
Novel to familiar place preference ratio4.64.96.2-1.32.4-2.52.4
Novelty place preference3.33.44.5-1.32.0-2.11.9
Time in novel zone, NPP test3.03.24.2-1.11.8-2.02.0
Total zone transitions, NPP test1.72.44.6-2.11.4-1.70.2
Total locomotion distance, NPP test1.52.04.3-2.11.0-1.60.4
Locomotion velocity, NPP test1.42.04.5-2.11.0-1.50.1
Pavlov. Cond. lever latency0.60.82.11.5-0.21.0-0.3
Pavlov. Cond. magazine entry latency2.12.74.2-0.1-2.01.5-2.1
Pavlov. Cond. change in total contacts0.20.20.7-0.4-0.80.1-0.2
Pavlov. Cond. index score0.40.51.1-1.0-0.8-0.0-0.6
Pavlov. Cond. latency score0.50.72.1-1.4-0.6-0.4-0.5
Pavlov. Cond. lever contacts0.81.02.7-1.70.2-1.00.1
Pavlov. Cond. magazine entry number0.60.81.60.31.3-0.71.0
Pavlov. Cond. intertrial magazine entries0.60.81.21.1-0.71.0-0.6
Pavlov. Cond. lever-magazine prob. diff.0.50.71.0-1.0-1.00.2-0.9
Pavlov. Cond. response bias0.81.01.8-0.3-1.30.8-1.2
Bone: apparent density2.94.87.2-2.72.4-2.50.6
Bone surface3.86.813.1-3.62.3-2.90.2
Bone volume4.16.913.0-3.62.4-2.90.3
Bone: connectivity density2.33.64.7-2.12.1-2.20.9
Bone: cortical apparent density0.40.50.80.40.8-0.70.9
Bone: cortical area0.81.21.8-0.80.9-1.31.2
Bone: cortical porosity0.30.31.0-1.00.3-0.3-0.4
Bone: cortical porosity0.91.02.0-1.40.8-1.10.3
Bone: cortical thickness1.01.62.3-0.51.4-1.41.5
Bone: cortical thickness0.70.81.71.3-0.51.1-0.2
Bone: cortical tissue density0.30.40.50.40.7-0.60.7
Bone: elastic displacement0.10.10.3-0.30.5-0.0-0.5
Bone: elastic work0.30.40.6-0.00.8-0.60.7
Bone: endosteal estimation0.10.20.50.1-0.4-0.30.7
Bone: endosteal perimeter0.10.30.6-0.8-0.5-0.1-0.5
Bone: final force0.81.33.0-0.20.7-1.31.7
Bone: final moment0.61.02.4-0.10.6-1.11.5
Bone: marrow area0.10.20.50.1-0.4-0.30.7
Bone: maximum diameter0.40.71.7-1.3-0.4-0.3-0.8
Bone: maximum force0.61.03.00.20.5-1.01.7
Bone: maximum moment0.50.92.40.20.5-0.91.5
Bone: minimum diameter0.10.10.2-0.3-0.4-0.30.2
Bone: periosteal estimation0.30.71.2-0.60.3-1.11.0
Bone: periosteal perimeter0.20.41.1-1.10.1-0.70.1
Bone: post-yield work0.30.40.70.7-0.50.10.8
Bone: stiffness1.32.15.90.10.7-1.42.4
Bone: tissue strength1.41.32.1-0.21.3-1.21.4
Bone: trabecular number0.91.53.8-2.00.8-0.9-0.6
Bone: trabecular spacing2.73.58.22.9-1.51.90.2
Bone: trabecular thickness6.27.512.2-3.52.6-3.20.8
Bone: trabecular tissue density0.50.72.10.90.0-0.31.4
Breakpoint value in progressive ratio session3.43.87.00.3-2.02.0-2.7
Distance traveled before self-admin0.60.61.0-0.50.7-1.00.9
Distance traveled after self-admin0.20.20.4-0.4-0.30.1-0.6
Delta time in closed arm before/after self-admin2.12.05.42.3-0.71.40.4
Delta time in open arm before/after self-admin1.00.91.4-0.31.0-1.11.2
Diff in mean of infusions in LGA sessions1.01.12.4-0.2-1.10.9-1.6
Extinction: sum of active levers before priming1.21.21.80.8-1.11.3-1.2
Active lever presses in extinction session 60.80.72.2-0.5-0.40.5-1.5
Delta distance traveled before/after self-admin0.80.81.9-0.2-0.80.8-1.4
Delta ambulatory time before/after self-admin0.80.82.0-0.4-0.80.7-1.4
Time in closed arm before self-admin1.82.03.3-1.41.3-1.81.1
Time in closed arm after self-admin0.10.10.10.2-0.30.3-0.2
Time in open arm before self-admin0.50.50.80.2-0.70.9-0.9
Time in open arm after self-admin0.30.40.80.20.6-0.50.9
Sum of active levers in priming session hrs 5-60.10.10.1-0.20.4-0.30.1
Time to tail flick, vehicle, before self-admin0.50.51.4-1.20.3-0.7-0.4
Time to tail flick, vehicle, after self-admin0.90.91.71.1-0.61.3-0.6
Time to tail flick, test, before self-admin0.70.71.5-1.20.7-0.8-0.2
Time to tail flick, test, after self-admin0.20.20.3-0.5-0.4-0.0-0.5
Delta time to tail flick, vehicle, before/after SA1.11.12.61.6-0.61.20.2
Delta time to tail flick, test, before/after SA1.11.01.50.9-1.21.1-0.6
Ambulatory time before self-admin0.50.50.7-0.30.7-0.90.8
Ambulatory time after self-admin0.10.10.2-0.4-0.1-0.0-0.4
Total heroin consumption0.70.92.4-0.4-0.70.7-1.5
Area under the delay curve1.11.12.70.20.9-1.01.6
Delay disc. indifference point, 0s delay9.19.912.7-2.13.5-3.63.2
Delay disc. indifference point, 16s delay0.00.00.10.10.1-0.20.3
Delay disc. indifference point, 2s delay3.74.27.4-0.52.1-2.12.7
Delay disc. indifference point, 24s delay0.30.30.70.50.3-0.30.8
Delay disc. indifference point, 4s delay0.60.71.1-0.30.8-0.91.0
Delay disc. indifference point, 8s delay0.50.61.30.90.1-0.11.1
Delay discount exponential model param0.91.02.4-0.3-0.80.8-1.6
Delay discount hyperbolic model param1.41.53.5-0.2-1.11.1-1.9
Fecal boli incidents, locomotor time 10.70.72.00.50.5-0.61.4
Change in fecal boli incidents, locomotor task0.10.10.1-0.4-0.4-0.0-0.2
Time >=10cm from walls, locomotor time 11.71.72.7-1.21.2-1.61.2
Bouts of movement, locomotor time 10.70.72.10.3-1.40.8-0.4
Total resting periods, locomotor time 10.60.61.80.2-1.30.6-0.5
Rest time, locomotor task time 10.50.61.9-0.4-1.40.3-0.5
Distance moved, locomotor task time 11.92.03.3-1.01.8-1.61.1
Vertical activity count, locomotor time 10.40.40.91.00.70.20.3
Time >=10cm from walls, locomotor time 20.60.71.90.70.3-0.41.4
Bouts of movement, locomotor time 20.60.72.0-1.40.0-0.7-0.5
Total resting periods, locomotor time 20.70.72.1-1.50.1-0.7-0.5
Rest time, locomotor task time 20.40.40.8-0.9-0.7-0.1-0.6
Distance moved, locomotor task time 20.30.40.70.60.6-0.20.8
Vertical activity count, locomotor time 20.60.71.91.40.20.50.7
Weight adjusted by age0.70.82.21.5-0.50.80.4
Seeking ratio, delayed vs. immediate footshock1.71.94.5-0.7-1.40.9-2.1
Locomotion in novel chamber0.60.71.50.7-1.20.8-0.5
Locomotion in novel chamber post-restriction1.41.62.90.6-1.71.3-1.1
Progressive ratio0.10.10.10.3-0.20.10.3
Food seeking constrained by brief footshock0.30.40.9-0.9-0.7-0.1-0.4
Seeking ratio, punishment vs. effort0.20.30.8-0.9-0.2-0.3-0.4
Run reversals in cocaine runway, females0.20.20.3-0.3-0.50.2-0.6
Run reversals in cocaine runway, males0.60.61.5-0.6-0.60.3-1.2
Latency to leave start box in cocaine runway1.21.32.5-1.61.3-0.9-0.5
Latency to leave start box in cocaine runway, F3.63.95.9-2.12.4-2.10.7
Latency to leave start box in cocaine runway, M3.02.94.11.0-1.72.0-1.9
Cd content in liver0.40.41.0-0.31.0-0.60.5
Co content in liver0.30.40.80.1-0.60.7-0.9
Cu content in liver0.81.01.7-1.30.8-1.20.6
Fe content in liver0.30.40.60.3-0.80.8-0.3
K content in liver0.80.82.0-1.40.1-1.00.3
Mg content in liver0.90.92.1-1.40.5-1.20.4
Mn content in liver1.51.75.4-2.30.1-1.2-0.5
Na content in liver1.61.72.5-1.41.0-1.61.2
Rb content in liver1.21.52.4-1.41.0-1.60.9
Se content in liver0.20.30.7-0.4-0.80.2-0.4
Sr content in liver0.80.71.41.2-0.71.0-0.3
Zn content in liver3.33.65.41.7-1.72.3-1.8