Blm

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression ENSRNOG00000011213 0.14 0.08 1.0e-08 0.1 0.1 0.11 0.11 1.0e-09 7.2e-10 2.0e-10 1.1e-10
2 Liver gene expression ENSRNOG00000011213 0.17 0.08 7.5e-12 0.1 0.08 0.09 0.09 6.7e-11 3.1e-09 2.4e-10 1.2e-10
3 PL gene expression ENSRNOG00000011213 0.05 0.03 1.3e-03 0.03 0.04 0.04 0.04 5.3e-03 9.6e-04 2.4e-04 4.0e-04

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail1.34.16.31.9-1.62.5
BMI without tail2.65.48.72.7-0.62.9
Body weight0.10.20.7-0.00.20.8
Epididymis fat weight0.51.12.0-1.41.10.2
Glucose0.20.40.9-0.2-1.0-0.4
Heart weight0.10.10.2-0.5-0.3-0.1
Left kidney weight0.51.42.7-1.70.5-1.2
Right kidney weight0.00.10.3-0.50.20.0
Tail length0.51.54.2-0.52.0-0.3
Length with tail1.13.96.0-2.02.4-1.3
Length without tail0.81.72.8-1.70.6-1.3
Liver weight, left0.50.81.7-1.30.4-0.7
Liver weight, right2.94.86.7-2.62.1-1.8
Parametrial fat weight0.71.32.70.11.11.7
Retroperitoneal fat weight0.72.44.4-0.31.62.1
Intraocular pressure0.20.30.70.8-0.40.2
Extensor digitorum longus weight0.31.22.41.10.21.6
Soleus weight1.23.69.3-0.73.00.9
Tibialis anterior weight0.30.91.50.31.01.2
Tibia length0.61.84.12.0-1.00.6
Number of licking bursts0.20.20.5-0.0-0.7-0.5
Food consumed during 24 hour testing period0.30.41.1-0.00.1-1.0
Times rat made contact with spout0.10.10.2-0.10.00.4
Mean time between licks in bursts3.44.87.5-2.70.6-2.6
Mean num. licks in bursts0.20.20.4-0.20.50.6
Std. dev. time between licks in bursts0.40.51.20.0-0.6-1.1
Water consumed over 24 hours0.00.00.10.2-0.10.2
Indifference point 0 sec0.10.20.50.70.40.2
Indifference point AUC0.91.11.8-1.10.4-1.3
Indifference point function ln k2.43.44.72.2-1.81.5
Indifference point function log k2.43.44.72.2-1.81.5
Delay discounting total patch changes 0 sec0.20.30.90.90.00.2
Delay discounting total patch changes 12 sec4.56.09.3-2.71.2-3.0
Delay discounting total patch changes 18 sec1.72.24.2-1.40.7-2.0
Delay discounting total patch changes 24 sec0.40.51.1-0.31.0-0.6
Delay discounting total patch changes 6 sec1.42.15.3-0.82.3-0.6
Delay discounting time to switch 0 sec0.81.21.6-1.10.8-1.2
Delay discounting water rate 0 sec0.91.41.71.3-0.91.3
Delay discounting water rate 12 sec5.38.015.62.9-0.23.9
Delay discounting water rate 18 sec5.26.910.93.0-0.93.3
Delay discounting water rate 24 sec1.01.41.81.2-1.01.3
Delay discounting water rate 6 sec2.43.56.61.8-0.82.6
Locomotor activity3.25.17.52.7-1.82.1
Locomotor testing distance2.44.05.32.3-1.22.3
Locomotor testing rearing0.91.52.31.50.21.4
Light reinforcement 13.36.111.9-2.50.2-3.5
Light reinforcement 24.35.77.6-2.71.4-2.7
Reaction time number correct0.60.92.40.5-1.5-0.2
Reaction time mean minus median0.40.50.80.60.90.6
Reaction time mean minus median AUC0.30.40.60.50.80.5
Reaction time num false alarms5.37.312.5-3.1-0.1-3.5
Reaction time num false alarms AUC3.14.48.2-2.0-1.1-2.9
Reaction time trials correct on left0.60.92.40.5-1.5-0.2
Reaction time trials on left0.71.02.60.6-1.6-0.2
Reaction time mean0.20.30.60.30.60.8
Reaction time mean AUC0.40.50.90.50.70.9
Median of all reaction times0.10.10.30.10.30.5
Reaction time omissions0.10.20.50.2-0.7-0.3
Reaction time false alarm rate2.02.94.8-2.0-0.0-2.2
Reaction time premature initiation rate0.70.91.60.51.30.9
Reaction time premature initiations0.20.30.50.70.30.7
Std. dev. reaction times1.11.52.21.50.61.4
Reaction time trials completed0.71.02.60.6-1.6-0.2
Reaction time trials AUC0.60.82.30.3-1.5-0.3
Social response proportion0.80.91.10.8-0.91.1
Social responses0.81.12.01.1-1.40.4
Social time1.21.63.21.2-1.8-0.3
Conditioned locomotion1.41.62.3-1.50.9-1.3
Cocaine response after cond. corrected0.30.30.7-0.8-0.2-0.5
Cocaine response after cond. not corrected0.10.10.2-0.4-0.1-0.1
Cocaine response before conditioning0.20.20.6-0.00.8-0.2
Saline control response2.12.84.11.41.52.0
Condit. Reinf. active minus inactive responses0.30.41.1-0.41.10.0
Condit. Reinf. active-inactive response ratio0.40.40.8-0.90.4-0.5
Condit. Reinf. active responses0.70.92.50.11.60.5
Condit. Reinf. inactive responses1.72.13.41.21.81.2
Condit. Reinf. lever presses3.95.38.52.9-0.32.7
Condit. Reinf. lever reinforcers received0.91.33.60.21.90.6
Pavlov. Cond. lever latency2.43.34.5-1.6-1.7-2.1
Pavlov. Cond. magazine entry latency1.71.93.01.01.31.7
Pavlov. Cond. change in total contacts2.63.66.21.12.51.9
Pavlov. Cond. index score3.44.46.11.72.02.5
Pavlov. Cond. latency score3.03.75.01.61.92.2
Pavlov. Cond. lever contacts3.85.27.82.31.62.8
Pavlov. Cond. magazine entry number2.22.74.4-1.6-1.0-2.1
Pavlov. Cond. intertrial magazine entries0.00.10.20.10.4-0.0
Pavlov. Cond. lever-magazine prob. diff.3.34.36.11.71.92.5
Pavlov. Cond. response bias3.54.97.22.01.82.7
Conditioned reinforcement - actives0.20.10.4-0.6-0.1-0.2
Conditioned reinforcement - inactives2.93.35.6-2.40.3-2.0
Conditioned locomotion0.60.71.8-0.4-1.3-0.4
Intermittent access intake day 1-15 change0.70.71.1-0.71.1-0.6
Intermittent access intake escalation1.00.91.2-1.01.1-0.8
Intermittent access intake escalation 22.02.02.8-1.71.2-1.4
Intermitt. access day 1 inactive lever presses1.71.82.8-1.71.5-0.6
Intermitt. access day 15 inactive lever presses2.32.54.5-2.11.3-1.2
Intermitt. access escalation Index0.30.20.30.60.30.5
Intermittent access day 1 total infusions0.50.61.4-1.2-0.2-0.7
Intermittent access day 15 total infusions0.70.81.7-1.30.3-0.7
Intermittent access terminal intake (last 3 days)0.60.71.3-1.20.4-0.7
Intermittent access total infusions0.91.02.4-1.50.1-0.8
Intermittent access day 1 locomotion0.50.51.2-1.10.2-0.5
Intermittent access day 15 total locomotion1.21.32.1-1.31.4-0.1
Intermittent access total locomotion0.60.71.5-1.20.3-0.7
Intermittent access standard deviation2.62.85.1-1.80.1-2.3
Cocaine induced anxiety0.10.20.4-0.30.6-0.1
Post-drug Anxiety1.92.14.4-1.32.1-0.4
Baseline Anxiety0.80.92.1-0.31.40.6
Lifetime Intake0.60.71.7-1.30.2-0.6
Incentive Sensitization - Responses0.50.50.8-0.70.9-0.2
Incentive Sensitization - Breakpoint0.50.50.9-0.80.9-0.3
Progressive ratio test 1 active lever presses0.30.30.7-0.80.1-0.5
Progressive ratio test 1 breakpoint0.30.30.5-0.70.2-0.5
Progressive ratio test 1 inactive lever presses1.51.63.1-1.81.2-0.2
Progressive ratio test 2 active lever presses1.11.12.1-1.40.8-0.8
Progressive ratio test 2 breakpoint1.01.12.1-1.40.7-0.9
Progressive ratio test 2 inactive lever presses1.71.92.9-1.71.6-0.6
Total sessions with >9 infusions1.41.53.4-1.9-0.1-1.1
Short access day 1 total inactive lever presses3.03.35.8-2.41.9-0.9
Short access day 10 total inactive lever presses3.23.56.1-2.02.5-0.6
Short access day 1 total infusions0.60.61.3-1.10.5-0.6
Short access day 10 total infusions0.30.30.6-0.80.5-0.3
Short access total infusions0.40.40.9-0.90.5-0.4
Short access day 1 locomotion2.02.13.2-1.80.9-1.5
Short access day 10 total locomotion0.60.70.9-0.80.7-1.0
Short access total locomotion1.51.52.5-1.40.2-1.6
Compulsive drug intake0.10.10.3-0.6-0.0-0.2
One hour access (0.3 mA shock)0.60.71.4-1.2-0.2-0.8
One hour access (shock baseline)0.20.30.4-0.7-0.0-0.6
Number of responses in last shaping day0.20.20.3-0.3-0.4-0.5
Context. condit. distance diff. score0.20.30.4-0.20.7-0.7
Locomotion velocity, session 10.20.20.20.5-0.40.4
Locomotion distance, session 10.00.00.10.20.2-0.0
Locomotion velocity, session 20.20.20.30.40.50.5
Locomotion distance, session 20.00.00.10.00.3-0.2
Locomotion velocity, session 30.91.11.71.30.51.1
Locomotion distance, session 31.41.52.91.70.21.2
Stereotopy head waving bouts, day 34.55.47.6-2.71.2-2.8
Stereotopy head waving duration, day 30.70.81.40.9-1.20.4
Locomotion velocity, session 71.71.83.31.40.41.8
Locomotion distance, session 70.81.01.81.3-0.01.1
Stereotopy head waving bouts, day 70.70.81.5-0.80.4-1.2
Stereotopy head waving duration, day 70.10.10.30.60.00.3
Locomotion velocity, session 81.92.33.82.0-0.11.7
Locomotion distance, session 80.60.81.9-0.41.4-0.6
Degree of sensitization distance0.10.10.30.0-0.60.2
Degree of sensitization stereotypy0.10.10.4-0.20.6-0.1
Condit. Reinf. active minus inactive responses1.61.73.8-1.21.9-0.3
Condit. Reinf. active-inactive response ratio0.50.50.8-0.40.9-0.7
Condit. Reinf. active responses1.41.83.5-1.31.9-0.2
Condit. Reinf. inactive responses0.20.20.4-0.40.60.4
Incentive salience index mean2.42.97.7-0.92.80.4
Condit. Reinf. lever presses2.53.47.70.12.81.6
Time in familiar zone, hab. session 10.60.60.60.8-0.80.8
Time in novel zone, hab. session 10.30.30.7-0.90.2-0.5
Total zone transitions, hab. session 11.72.43.11.81.01.7
Total locomotion distance, hab. session 18.311.915.8-4.02.9-3.4
Locomotion velocity, hab. session 19.012.916.1-4.03.4-3.3
Time in familiar zone, hab. session 20.80.81.2-0.4-1.1-1.0
Time in novel zone, hab. session 20.30.30.70.20.50.8
Total zone transitions, hab. session 22.02.64.52.10.51.7
Total locomotion distance, hab. session 27.49.811.9-3.52.5-3.3
Locomotion velocity, hab. session 27.09.511.2-3.32.7-3.1
Novel to familiar place preference ratio0.30.30.70.8-0.50.1
Novelty place preference0.30.30.70.8-0.50.2
Time in novel zone, NPP test0.70.71.11.1-0.80.6
Total zone transitions, NPP test0.30.40.40.50.60.6
Total locomotion distance, NPP test12.217.024.9-5.02.5-4.4
Locomotion velocity, NPP test13.319.126.8-5.22.7-4.8
Pavlov. Cond. lever latency4.15.215.00.5-3.9-0.5
Pavlov. Cond. magazine entry latency4.55.813.8-1.83.7-0.5
Pavlov. Cond. change in total contacts10.110.719.8-3.04.4-1.8
Pavlov. Cond. index score4.86.116.8-1.24.10.1
Pavlov. Cond. latency score4.76.017.0-1.04.10.3
Pavlov. Cond. lever contacts4.14.813.9-0.73.70.3
Pavlov. Cond. magazine entry number2.83.59.70.9-3.1-0.3
Pavlov. Cond. intertrial magazine entries0.10.10.10.10.40.4
Pavlov. Cond. lever-magazine prob. diff.5.06.316.7-1.54.1-0.1
Pavlov. Cond. response bias4.25.111.2-1.93.3-0.8
Bone: apparent density1.93.25.6-1.80.9-2.4
Bone surface0.91.63.0-1.10.9-1.7
Bone volume1.11.83.5-1.10.8-1.9
Bone: connectivity density2.43.86.9-2.10.5-2.6
Bone: cortical apparent density0.20.20.3-0.20.50.6
Bone: cortical area3.04.55.9-2.02.4-1.9
Bone: cortical porosity0.40.41.00.4-1.00.2
Bone: cortical porosity0.30.30.70.4-0.80.3
Bone: cortical thickness1.52.52.8-1.61.7-1.5
Bone: cortical thickness2.42.94.7-1.9-0.2-2.2
Bone: cortical tissue density0.10.10.2-0.30.40.4
Bone: elastic displacement1.71.94.5-2.10.6-0.9
Bone: elastic work0.81.11.8-1.31.0-0.7
Bone: endosteal estimation0.71.63.9-0.9-0.2-2.0
Bone: endosteal perimeter1.02.03.4-1.50.6-1.8
Bone: final force1.22.02.3-1.31.5-1.5
Bone: final moment1.22.12.3-1.31.5-1.5
Bone: marrow area0.71.63.9-0.8-0.3-2.0
Bone: maximum diameter1.01.82.4-1.01.5-1.5
Bone: maximum force1.01.82.3-1.11.5-1.3
Bone: maximum moment0.91.62.1-1.11.4-1.2
Bone: minimum diameter3.25.810.3-2.51.0-3.2
Bone: periosteal estimation1.53.15.3-1.61.2-2.3
Bone: periosteal perimeter1.62.73.1-1.71.4-1.8
Bone: post-yield work0.10.10.30.60.2-0.0
Bone: stiffness1.01.62.1-1.11.5-1.2
Bone: tissue strength3.13.04.42.1-0.72.0
Bone: trabecular number2.53.98.3-1.80.3-2.9
Bone: trabecular spacing3.03.85.92.2-0.92.4
Bone: trabecular thickness1.82.22.3-1.51.4-1.5
Bone: trabecular tissue density0.50.80.90.81.00.8
Breakpoint value in progressive ratio session0.60.71.20.90.31.1
Distance traveled before self-admin2.22.44.8-1.42.2-0.7
Distance traveled after self-admin4.14.58.9-1.73.0-1.3
Delta time in closed arm before/after self-admin0.30.30.6-0.8-0.2-0.4
Delta time in open arm before/after self-admin1.71.62.61.60.11.5
Diff in mean of infusions in LGA sessions0.50.51.50.11.20.0
Extinction: sum of active levers before priming0.50.50.8-0.80.9-0.2
Active lever presses in extinction session 60.20.20.6-0.80.1-0.1
Delta distance traveled before/after self-admin0.20.20.50.10.0-0.7
Delta ambulatory time before/after self-admin0.30.30.8-0.3-0.0-0.9
Time in closed arm before self-admin1.21.42.4-1.01.5-1.0
Time in closed arm after self-admin3.03.14.4-2.11.3-1.9
Time in open arm before self-admin0.40.40.8-0.6-0.9-0.4
Time in open arm after self-admin2.22.54.41.7-0.32.1
Sum of active levers in priming session hrs 5-60.40.40.9-0.3-0.9-0.6
Time to tail flick, vehicle, before self-admin0.50.51.1-1.00.6-0.3
Time to tail flick, vehicle, after self-admin0.10.10.30.30.5-0.3
Time to tail flick, test, before self-admin0.90.92.21.5-0.60.3
Time to tail flick, test, after self-admin0.20.20.6-0.2-0.8-0.3
Delta time to tail flick, vehicle, before/after SA2.42.45.72.4-0.80.9
Delta time to tail flick, test, before/after SA1.00.91.7-1.3-0.4-0.9
Ambulatory time before self-admin2.12.24.6-1.42.1-0.3
Ambulatory time after self-admin4.65.111.6-1.73.4-0.9
Total heroin consumption0.10.10.20.30.20.4
Area under the delay curve0.60.71.00.41.00.9
Delay disc. indifference point, 0s delay1.21.32.3-1.50.7-1.0
Delay disc. indifference point, 16s delay0.30.30.50.70.10.7
Delay disc. indifference point, 2s delay1.01.11.61.30.31.3
Delay disc. indifference point, 24s delay0.10.10.1-0.20.3-0.2
Delay disc. indifference point, 4s delay1.81.92.80.91.71.5
Delay disc. indifference point, 8s delay0.40.40.70.20.70.8
Delay discount exponential model param0.80.91.4-0.5-1.2-1.0
Delay discount hyperbolic model param1.01.11.4-0.7-1.1-1.2
Fecal boli incidents, locomotor time 13.64.06.4-2.50.4-2.3
Change in fecal boli incidents, locomotor task1.31.32.21.5-0.61.1
Time >=10cm from walls, locomotor time 11.41.42.40.61.21.6
Bouts of movement, locomotor time 10.50.51.5-0.41.20.0
Total resting periods, locomotor time 10.91.02.5-0.71.6-0.2
Rest time, locomotor task time 13.03.33.7-1.91.9-1.6
Distance moved, locomotor task time 11.31.41.61.3-1.01.3
Vertical activity count, locomotor time 11.61.72.31.5-1.31.0
Time >=10cm from walls, locomotor time 20.50.61.10.41.00.6
Bouts of movement, locomotor time 21.01.02.4-0.70.4-1.6
Total resting periods, locomotor time 21.81.94.2-1.10.2-2.1
Rest time, locomotor task time 25.86.79.5-3.11.1-3.1
Distance moved, locomotor task time 20.30.30.50.7-0.00.7
Vertical activity count, locomotor time 20.50.50.80.9-0.50.6
Weight adjusted by age0.30.40.6-0.70.2-0.8
Seeking ratio, delayed vs. immediate footshock10.612.120.7-4.52.9-2.7
Locomotion in novel chamber0.50.72.0-0.11.40.0
Locomotion in novel chamber post-restriction0.40.40.70.9-0.60.4
Progressive ratio0.20.20.5-0.40.7-0.1
Food seeking constrained by brief footshock0.80.92.4-0.21.50.6
Seeking ratio, punishment vs. effort0.00.00.1-0.10.30.0
Run reversals in cocaine runway, females0.20.20.3-0.50.4-0.5
Run reversals in cocaine runway, males0.90.81.90.70.11.4
Latency to leave start box in cocaine runway2.52.84.6-1.51.2-2.1
Latency to leave start box in cocaine runway, F1.71.83.7-1.30.2-1.9
Latency to leave start box in cocaine runway, M1.61.62.1-1.01.4-1.3
Cd content in liver3.03.35.1-2.0-0.9-2.3
Co content in liver0.20.30.4-0.6-0.5-0.5
Cu content in liver0.91.01.70.51.31.1
Fe content in liver0.00.10.1-0.20.3-0.2
K content in liver0.80.81.81.30.30.8
Mg content in liver1.92.04.12.0-0.91.1
Mn content in liver0.40.40.6-0.50.8-0.6
Na content in liver1.71.83.92.00.31.1
Rb content in liver1.62.02.51.6-1.41.2
Se content in liver0.30.30.5-0.60.4-0.7
Sr content in liver1.41.32.11.5-0.51.2
Zn content in liver0.00.10.1-0.10.1-0.4