Gk5

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 BLA gene expression ENSRNOG00000010942 0.49 0.18 8.5e-09 0.11 0.18 0.16 0.16 2.7e-06 7.2e-10 4.7e-09 4.7e-09
2 Brain gene expression ENSRNOG00000010942 0.15 0.07 3.3e-16 0.16 0.17 0.16 0.16 3.2e-14 1.3e-15 8.5e-15 9.4e-15
3 Brain mRNA stability ENSRNOG00000010942 0.1 0.05 1.2e-07 0.06 0.08 0.06 0.07 3.1e-06 1.0e-07 1.2e-06 6.7e-07
4 NAcc gene expression ENSRNOG00000010942 0.1 0.06 3.5e-05 0.04 0.06 0.06 0.06 8.2e-04 4.8e-05 4.9e-05 3.7e-05
5 PL gene expression ENSRNOG00000010942 0.39 0.14 1.4e-11 0.13 0.15 0.14 0.15 4.4e-10 8.6e-12 5.3e-11 3.4e-11

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4 5
BMI with tail7.925.631.44.84.65.64.65.6
BMI without tail4.810.115.92.72.14.03.43.4
Body weight5.422.830.04.34.45.54.15.5
Epididymis fat weight1.22.83.71.81.41.91.41.8
Glucose0.30.51.10.40.70.41.10.7
Heart weight0.60.81.80.71.01.30.40.9
Left kidney weight4.412.515.23.03.53.93.83.5
Right kidney weight4.011.314.32.83.33.83.53.3
Tail length0.10.41.1-0.6-0.71.0-0.00.1
Length with tail0.10.30.70.00.40.8-0.00.7
Length without tail0.71.53.21.01.80.80.11.6
Liver weight, left0.10.20.70.00.10.20.90.4
Liver weight, right2.54.27.21.91.81.62.72.1
Parametrial fat weight0.30.51.1-0.9-0.7-1.0-0.3-0.5
Retroperitoneal fat weight1.13.65.11.81.22.22.02.3
Intraocular pressure0.91.32.31.01.10.91.11.5
Extensor digitorum longus weight3.112.316.23.13.62.84.03.9
Soleus weight1.75.08.21.81.91.82.72.9
Tibialis anterior weight1.24.36.31.61.92.52.02.3
Tibia length0.30.81.6-0.20.41.20.81.2
Number of licking bursts0.30.40.7-0.8-0.6-0.8-0.3-0.3
Food consumed during 24 hour testing period1.01.21.7-1.3-1.1-1.1-1.1-1.0
Times rat made contact with spout0.30.30.70.40.9-0.50.40.7
Mean time between licks in bursts0.20.30.70.70.8-0.10.10.6
Mean num. licks in bursts0.91.11.91.21.40.80.71.0
Std. dev. time between licks in bursts0.10.10.20.50.1-0.30.20.0
Water consumed over 24 hours0.20.30.7-0.6-0.4-0.8-0.3-0.2
Indifference point 0 sec0.00.10.30.20.00.50.10.1
Indifference point AUC0.10.20.60.80.20.4-0.1-0.1
Indifference point function ln k0.10.10.3-0.5-0.2-0.1-0.10.2
Indifference point function log k0.10.10.3-0.5-0.2-0.1-0.10.2
Delay discounting total patch changes 0 sec0.20.30.40.50.40.60.50.6
Delay discounting total patch changes 12 sec0.70.92.11.51.10.90.50.4
Delay discounting total patch changes 18 sec0.10.20.60.20.20.8-0.4-0.1
Delay discounting total patch changes 24 sec0.10.10.30.1-0.20.0-0.6-0.1
Delay discounting total patch changes 6 sec0.10.10.30.6-0.20.10.10.0
Delay discounting time to switch 0 sec2.13.25.2-1.9-1.7-1.4-1.5-2.3
Delay discounting water rate 0 sec1.32.03.61.61.01.31.11.9
Delay discounting water rate 12 sec0.81.22.80.81.10.81.01.7
Delay discounting water rate 18 sec3.24.25.91.81.92.12.02.4
Delay discounting water rate 24 sec0.30.51.30.50.50.50.51.2
Delay discounting water rate 6 sec1.01.43.00.61.10.81.31.7
Locomotor activity0.81.34.10.90.42.00.41.1
Locomotor testing distance0.40.71.80.70.31.30.40.9
Locomotor testing rearing1.32.02.61.60.91.31.61.5
Light reinforcement 10.10.10.4-0.6-0.0-0.50.3-0.1
Light reinforcement 20.10.10.3-0.40.3-0.60.20.4
Reaction time number correct0.10.10.30.6-0.20.50.40.2
Reaction time mean minus median0.30.40.50.60.70.70.70.3
Reaction time mean minus median AUC0.70.91.50.81.00.91.20.8
Reaction time num false alarms1.21.62.7-1.3-1.2-0.8-1.6-1.4
Reaction time num false alarms AUC1.92.63.7-1.6-1.5-1.1-1.9-1.8
Reaction time trials correct on left0.10.10.30.6-0.20.50.40.2
Reaction time trials on left0.10.10.30.5-0.20.50.40.2
Reaction time mean0.10.10.6-0.20.3-0.80.0-0.1
Reaction time mean AUC0.20.31.0-0.5-0.1-1.0-0.3-0.3
Median of all reaction times0.40.52.0-0.6-0.1-1.4-0.3-0.4
Reaction time omissions0.00.00.1-0.1-0.20.2-0.1-0.3
Reaction time false alarm rate1.52.13.1-1.6-1.1-1.2-1.7-1.5
Reaction time premature initiation rate0.30.31.50.1-0.5-1.2-0.0-0.0
Reaction time premature initiations0.10.20.50.5-0.4-0.70.30.1
Std. dev. reaction times0.00.00.00.10.2-0.00.2-0.1
Reaction time trials completed0.10.10.30.5-0.20.50.40.2
Reaction time trials AUC0.00.10.10.3-0.30.30.2-0.0
Social response proportion0.70.81.3-1.1-0.5-0.6-0.9-1.1
Social responses0.20.21.0-0.4-0.0-1.0-0.1-0.3
Social time0.30.41.1-0.5-0.2-1.0-0.5-0.5
Conditioned locomotion0.30.30.8-0.0-0.90.2-0.3-0.9
Cocaine response after cond. corrected0.30.31.00.20.10.51.00.6
Cocaine response after cond. not corrected0.40.41.00.00.10.91.00.6
Cocaine response before conditioning0.00.00.2-0.1-0.10.40.20.2
Saline control response2.63.54.22.01.71.81.72.0
Condit. Reinf. active minus inactive responses0.20.20.6-0.8-0.5-0.3-0.2-0.0
Condit. Reinf. active-inactive response ratio0.60.61.2-0.10.10.91.01.1
Condit. Reinf. active responses0.71.01.5-1.2-0.9-1.2-0.7-0.7
Condit. Reinf. inactive responses1.11.42.3-0.8-0.9-1.5-1.2-1.3
Condit. Reinf. lever presses0.20.31.0-1.0-0.2-0.8-0.20.0
Condit. Reinf. lever reinforcers received0.50.71.2-1.0-0.7-1.1-0.7-0.6
Pavlov. Cond. lever latency0.30.41.00.1-0.9-1.0-0.4-0.4
Pavlov. Cond. magazine entry latency1.01.22.40.81.60.90.91.1
Pavlov. Cond. change in total contacts1.52.13.00.91.51.71.41.5
Pavlov. Cond. index score0.30.40.90.00.90.70.40.5
Pavlov. Cond. latency score0.40.51.10.21.00.80.50.6
Pavlov. Cond. lever contacts0.30.40.9-0.11.00.70.50.5
Pavlov. Cond. magazine entry number0.40.51.3-0.4-1.1-0.2-0.8-0.8
Pavlov. Cond. intertrial magazine entries4.76.17.3-2.1-2.7-2.2-2.6-2.6
Pavlov. Cond. lever-magazine prob. diff.0.40.61.30.31.10.80.60.7
Pavlov. Cond. response bias0.40.51.30.01.10.60.70.6
Conditioned reinforcement - actives0.00.00.1-0.2-0.1-0.0-0.3-0.0
Conditioned reinforcement - inactives0.00.00.10.2-0.0-0.00.20.0
Conditioned locomotion0.20.30.50.30.60.60.70.2
Intermittent access intake day 1-15 change0.10.10.20.30.10.2-0.30.4
Intermittent access intake escalation0.10.10.30.50.30.3-0.10.5
Intermittent access intake escalation 20.50.50.9-0.5-0.5-0.9-0.9-0.5
Intermitt. access day 1 inactive lever presses1.01.01.91.40.91.11.10.5
Intermitt. access day 15 inactive lever presses0.20.20.50.50.7-0.30.60.3
Intermitt. access escalation Index0.20.20.6-0.3-0.8-0.4-0.2-0.3
Intermittent access day 1 total infusions0.20.20.40.40.40.50.60.3
Intermittent access day 15 total infusions0.40.40.70.60.60.50.70.8
Intermittent access terminal intake (last 3 days)0.30.30.50.40.60.30.50.7
Intermittent access total infusions0.20.20.30.50.50.30.60.4
Intermittent access day 1 locomotion0.40.40.80.40.50.80.90.2
Intermittent access day 15 total locomotion0.20.20.60.40.50.30.80.3
Intermittent access total locomotion0.30.30.50.70.40.70.70.1
Intermittent access standard deviation0.50.50.70.40.7-0.80.80.8
Cocaine induced anxiety0.60.71.3-0.7-0.2-1.1-1.0-0.8
Post-drug Anxiety0.20.20.8-0.20.3-0.9-0.4-0.1
Baseline Anxiety0.30.30.40.60.60.60.30.5
Lifetime Intake0.10.10.20.30.40.40.30.3
Incentive Sensitization - Responses0.70.71.40.61.0-0.50.81.2
Incentive Sensitization - Breakpoint0.60.61.30.51.0-0.40.71.2
Progressive ratio test 1 active lever presses0.10.20.60.30.20.80.2-0.0
Progressive ratio test 1 breakpoint0.40.41.30.60.51.10.50.3
Progressive ratio test 1 inactive lever presses0.10.20.40.40.10.7-0.3-0.2
Progressive ratio test 2 active lever presses0.40.40.70.80.70.50.30.9
Progressive ratio test 2 breakpoint0.20.20.30.50.40.30.10.6
Progressive ratio test 2 inactive lever presses0.20.20.4-0.2-0.4-0.5-0.7-0.3
Total sessions with >9 infusions0.10.10.3-0.00.10.50.00.1
Short access day 1 total inactive lever presses0.10.20.60.2-0.30.20.0-0.8
Short access day 10 total inactive lever presses0.90.91.61.31.10.51.10.7
Short access day 1 total infusions0.10.10.10.1-0.10.40.2-0.4
Short access day 10 total infusions0.50.61.00.80.71.00.60.7
Short access total infusions0.10.10.30.20.20.60.0-0.1
Short access day 1 locomotion0.30.31.00.5-0.41.00.4-0.3
Short access day 10 total locomotion1.11.21.81.41.00.91.30.7
Short access total locomotion1.01.12.51.20.61.60.80.6
Compulsive drug intake1.71.73.3-1.0-1.8-0.7-1.4-1.4
One hour access (0.3 mA shock)0.40.50.8-0.6-0.8-0.6-0.9-0.6
One hour access (shock baseline)0.10.10.6-0.20.2-0.7-0.20.2
Number of responses in last shaping day0.30.31.00.50.11.00.50.3
Context. condit. distance diff. score0.20.20.50.50.7-0.40.10.0
Locomotion velocity, session 12.93.13.81.81.51.81.91.7
Locomotion distance, session 15.67.38.62.62.62.82.92.6
Locomotion velocity, session 26.07.09.32.22.92.53.12.5
Locomotion distance, session 26.99.813.82.43.23.23.73.0
Locomotion velocity, session 31.11.23.90.30.8-0.52.01.2
Locomotion distance, session 30.10.20.3-0.50.5-0.40.4-0.1
Stereotopy head waving bouts, day 30.40.51.5-0.2-0.4-1.20.10.7
Stereotopy head waving duration, day 30.80.92.61.00.1-0.31.01.6
Locomotion velocity, session 74.85.26.82.32.12.12.62.3
Locomotion distance, session 70.50.71.90.60.71.40.60.4
Stereotopy head waving bouts, day 71.61.87.70.0-1.0-2.8-0.3-0.3
Stereotopy head waving duration, day 71.72.08.2-0.3-1.3-2.9-0.4-0.4
Locomotion velocity, session 83.44.07.32.01.91.32.71.9
Locomotion distance, session 82.33.55.21.72.21.32.31.6
Degree of sensitization distance0.70.72.21.00.21.50.10.4
Degree of sensitization stereotypy0.80.94.10.7-0.1-2.00.10.1
Condit. Reinf. active minus inactive responses0.10.10.1-0.20.30.20.10.3
Condit. Reinf. active-inactive response ratio2.62.83.81.41.81.71.52.0
Condit. Reinf. active responses0.10.10.3-0.6-0.1-0.10.1-0.1
Condit. Reinf. inactive responses1.92.33.1-1.8-1.6-1.4-1.1-1.7
Incentive salience index mean0.50.61.20.11.10.60.80.8
Condit. Reinf. lever presses2.12.83.71.21.91.41.91.8
Time in familiar zone, hab. session 14.74.57.7-1.1-2.7-1.9-2.8-1.6
Time in novel zone, hab. session 13.63.55.61.02.42.02.31.4
Total zone transitions, hab. session 15.17.19.62.72.52.33.12.7
Total locomotion distance, hab. session 13.44.96.32.31.92.52.32.1
Locomotion velocity, hab. session 14.46.37.52.72.12.62.72.4
Time in familiar zone, hab. session 20.50.51.2-0.2-0.6-0.3-1.1-0.9
Time in novel zone, hab. session 22.12.22.91.21.51.21.71.7
Total zone transitions, hab. session 24.76.08.92.02.42.43.02.4
Total locomotion distance, hab. session 22.73.66.11.61.62.52.11.6
Locomotion velocity, hab. session 22.73.75.91.61.62.42.11.6
Novel to familiar place preference ratio0.20.20.30.50.20.5-0.50.1
Novelty place preference0.30.30.50.70.40.7-0.30.4
Time in novel zone, NPP test0.60.61.11.00.71.0-0.10.8
Total zone transitions, NPP test9.313.416.32.93.74.04.03.5
Total locomotion distance, NPP test6.79.311.82.72.73.43.33.0
Locomotion velocity, NPP test4.86.89.52.12.43.13.02.4
Pavlov. Cond. lever latency0.91.12.2-0.5-1.5-1.1-1.2-0.8
Pavlov. Cond. magazine entry latency2.12.84.41.52.11.01.81.7
Pavlov. Cond. change in total contacts0.40.41.10.11.00.20.80.4
Pavlov. Cond. index score1.51.93.41.01.91.21.51.2
Pavlov. Cond. latency score1.72.23.71.11.91.41.51.3
Pavlov. Cond. lever contacts1.11.32.40.91.61.21.10.9
Pavlov. Cond. magazine entry number0.91.12.0-0.9-1.4-0.5-1.1-1.0
Pavlov. Cond. intertrial magazine entries3.84.54.8-2.2-2.1-2.1-2.1-2.1
Pavlov. Cond. lever-magazine prob. diff.1.21.43.00.81.70.91.41.0
Pavlov. Cond. response bias0.40.41.10.31.0-0.00.80.6
Bone: apparent density0.71.21.7-1.1-0.9-1.1-1.3-1.1
Bone surface1.73.04.0-1.9-1.3-2.0-1.7-1.7
Bone volume1.01.61.9-1.4-1.0-1.4-1.3-1.3
Bone: connectivity density1.11.72.2-1.0-1.2-1.5-1.4-1.4
Bone: cortical apparent density0.10.10.20.5-0.30.30.1-0.1
Bone: cortical area2.84.25.22.22.31.12.12.3
Bone: cortical porosity0.70.81.90.81.40.70.70.6
Bone: cortical porosity0.80.92.21.01.50.70.70.6
Bone: cortical thickness1.42.33.01.61.60.71.71.7
Bone: cortical thickness0.10.10.20.00.40.4-0.10.1
Bone: cortical tissue density0.10.10.20.5-0.30.30.2-0.1
Bone: elastic displacement2.73.04.01.72.02.01.31.7
Bone: elastic work1.62.12.61.41.61.51.31.5
Bone: endosteal estimation0.51.22.00.81.10.71.41.2
Bone: endosteal perimeter1.83.84.81.92.21.32.12.0
Bone: final force0.20.30.80.30.5-0.10.80.9
Bone: final moment0.30.51.30.40.50.00.91.1
Bone: marrow area0.61.42.20.91.20.91.51.2
Bone: maximum diameter5.29.511.13.33.22.23.33.2
Bone: maximum force0.20.40.80.30.70.10.90.6
Bone: maximum moment0.40.71.10.50.90.41.10.9
Bone: minimum diameter0.30.50.90.90.8-0.30.51.0
Bone: periosteal estimation1.83.75.31.82.11.12.32.1
Bone: periosteal perimeter3.35.47.12.72.51.22.52.4
Bone: post-yield work0.40.51.3-0.9-0.3-1.1-0.2-0.4
Bone: stiffness0.20.31.1-0.4-0.0-1.10.2-0.3
Bone: tissue strength0.10.10.3-0.5-0.3-0.10.20.2
Bone: trabecular number1.32.02.7-1.2-1.1-1.7-1.6-1.4
Bone: trabecular spacing0.20.30.40.6-0.10.60.60.6
Bone: trabecular thickness0.30.41.30.50.21.10.20.5
Bone: trabecular tissue density1.52.13.91.31.32.01.41.1
Breakpoint value in progressive ratio session0.70.81.5-0.5-0.9-1.2-1.0-0.8
Distance traveled before self-admin2.52.73.31.51.61.81.71.5
Distance traveled after self-admin0.10.20.5-0.00.10.7-0.4-0.2
Delta time in closed arm before/after self-admin0.30.31.20.00.5-1.10.5-0.2
Delta time in open arm before/after self-admin0.20.20.7-0.2-0.60.1-0.2-0.8
Diff in mean of infusions in LGA sessions0.40.51.5-0.3-0.6-1.2-0.6-0.2
Extinction: sum of active levers before priming0.40.41.11.00.50.7-0.10.2
Active lever presses in extinction session 60.20.20.40.60.30.6-0.10.0
Delta distance traveled before/after self-admin1.81.93.8-1.1-1.3-0.8-1.9-1.6
Delta ambulatory time before/after self-admin1.21.32.2-0.9-1.2-0.6-1.5-1.3
Time in closed arm before self-admin0.40.41.50.1-0.61.2-0.30.4
Time in closed arm after self-admin0.50.50.60.80.50.70.70.7
Time in open arm before self-admin0.30.31.1-0.5-0.1-1.0-0.5-0.3
Time in open arm after self-admin1.31.52.7-1.0-1.0-1.2-1.1-1.6
Sum of active levers in priming session hrs 5-61.41.42.01.41.41.10.81.0
Time to tail flick, vehicle, before self-admin0.10.10.20.2-0.1-0.20.50.4
Time to tail flick, vehicle, after self-admin0.80.91.60.90.91.30.80.6
Time to tail flick, test, before self-admin0.60.61.4-0.9-0.8-1.2-0.2-0.4
Time to tail flick, test, after self-admin0.40.51.00.30.50.40.91.0
Delta time to tail flick, vehicle, before/after SA0.50.51.60.30.81.20.30.1
Delta time to tail flick, test, before/after SA0.40.40.80.40.30.90.50.7
Ambulatory time before self-admin2.32.42.71.41.51.61.61.6
Ambulatory time after self-admin0.20.20.80.10.00.9-0.3-0.2
Total heroin consumption0.20.20.50.00.6-0.7-0.30.3
Area under the delay curve0.70.71.4-1.1-0.6-1.2-0.6-0.7
Delay disc. indifference point, 0s delay1.82.03.9-1.4-1.3-2.0-0.9-1.2
Delay disc. indifference point, 16s delay0.20.20.50.00.3-0.30.40.7
Delay disc. indifference point, 2s delay0.20.20.4-0.40.4-0.10.60.5
Delay disc. indifference point, 24s delay0.20.20.5-0.2-0.1-0.2-0.7-0.6
Delay disc. indifference point, 4s delay1.81.93.0-1.6-1.5-1.7-0.4-1.2
Delay disc. indifference point, 8s delay0.70.71.1-0.9-0.4-0.9-1.1-0.7
Delay discount exponential model param0.70.71.21.10.71.00.60.8
Delay discount hyperbolic model param0.60.61.21.10.61.00.40.7
Fecal boli incidents, locomotor time 11.01.11.90.51.01.01.41.1
Change in fecal boli incidents, locomotor task0.50.51.50.60.51.20.30.5
Time >=10cm from walls, locomotor time 10.30.30.70.60.80.60.50.4
Bouts of movement, locomotor time 10.10.10.3-0.6-0.2-0.30.1-0.1
Total resting periods, locomotor time 10.10.10.2-0.40.1-0.20.40.2
Rest time, locomotor task time 12.12.34.31.22.10.41.51.7
Distance moved, locomotor task time 10.30.41.1-0.4-1.10.1-0.2-0.7
Vertical activity count, locomotor time 11.01.01.4-0.9-1.2-0.9-0.8-1.2
Time >=10cm from walls, locomotor time 20.20.21.1-0.20.1-1.0-0.2-0.2
Bouts of movement, locomotor time 20.70.71.21.10.90.50.80.8
Total resting periods, locomotor time 20.60.61.00.91.00.50.70.8
Rest time, locomotor task time 20.10.10.2-0.10.40.30.1-0.0
Distance moved, locomotor task time 20.70.81.8-1.0-0.8-1.3-0.3-0.7
Vertical activity count, locomotor time 20.70.81.9-0.6-0.6-1.4-0.7-0.8
Weight adjusted by age3.13.54.92.21.61.91.52.1
Seeking ratio, delayed vs. immediate footshock0.20.20.40.6-0.2-0.6-0.3-0.4
Locomotion in novel chamber1.31.62.1-1.4-1.4-1.4-0.8-1.1
Locomotion in novel chamber post-restriction1.11.31.8-1.2-1.3-0.6-1.3-1.0
Progressive ratio2.12.42.81.51.61.41.61.7
Food seeking constrained by brief footshock0.30.41.00.30.8-0.31.00.3
Seeking ratio, punishment vs. effort0.70.91.8-1.0-0.6-1.3-0.4-1.0
Run reversals in cocaine runway, females0.10.10.60.0-0.30.8-0.1-0.0
Run reversals in cocaine runway, males0.60.61.50.41.2-0.40.80.7
Latency to leave start box in cocaine runway3.03.33.9-1.6-1.8-2.0-1.7-1.9
Latency to leave start box in cocaine runway, F1.31.42.4-0.7-1.5-1.0-1.4-1.2
Latency to leave start box in cocaine runway, M2.52.44.6-1.8-1.1-2.2-0.9-1.5
Cd content in liver0.60.62.0-0.80.1-1.4-0.4-0.5
Co content in liver0.40.40.80.60.90.30.90.4
Cu content in liver1.82.24.1-1.8-1.1-2.0-1.1-1.1
Fe content in liver1.01.22.0-1.3-0.8-1.4-1.1-0.7
K content in liver0.70.71.90.40.40.81.40.5
Mg content in liver0.20.30.90.10.40.50.90.2
Mn content in liver2.42.84.51.81.71.02.11.6
Na content in liver0.10.10.1-0.1-0.40.20.3-0.3
Rb content in liver0.00.00.1-0.4-0.20.1-0.1-0.1
Se content in liver1.31.51.7-1.3-1.2-1.1-1.3-1.3
Sr content in liver0.40.40.6-0.7-0.6-0.8-0.3-0.5
Zn content in liver0.20.20.7-0.8-0.00.20.2-0.6