Bmp1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000010890 0.05 0.04 5.7e-07 0.05 0.05 0.05 0.05 1.1e-06 2.4e-06 3.5e-06 3.9e-06
2 Brain gene expression ENSRNOG00000010890 0.19 0.11 0.0e+00 0.22 0.22 0.22 0.22 6.1e-20 4.3e-20 5.3e-20 6.0e-20
3 Liver gene expression ENSRNOG00000010890 0.1 0.07 9.0e-15 0.13 0.12 0.12 0.13 3.7e-14 5.2e-13 2.7e-13 4.9e-14

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail0.51.51.7-1.21.31.2
BMI without tail0.71.41.51.2-1.2-1.2
Body weight0.41.81.8-1.31.41.3
Epididymis fat weight2.35.35.52.3-2.3-2.3
Glucose0.00.00.00.2-0.1-0.2
Heart weight0.00.00.00.1-0.1-0.1
Left kidney weight0.30.80.9-0.90.90.9
Right kidney weight0.10.30.30.5-0.6-0.5
Tail length0.92.72.91.6-1.7-1.6
Length with tail0.10.20.3-0.50.40.5
Length without tail3.88.28.4-2.92.92.8
Liver weight, left2.23.63.6-1.91.91.9
Liver weight, right0.71.21.3-1.11.11.1
Parametrial fat weight3.46.66.72.6-2.6-2.6
Retroperitoneal fat weight0.20.50.70.7-0.6-0.8
Intraocular pressure0.60.90.90.9-0.9-0.9
Extensor digitorum longus weight12.650.450.6-7.17.17.1
Soleus weight1.02.93.0-1.71.71.7
Tibialis anterior weight8.127.827.9-5.35.35.3
Tibia length1.23.54.11.8-2.0-1.8
Number of licking bursts0.00.00.0-0.10.10.1
Food consumed during 24 hour testing period0.20.30.40.5-0.6-0.5
Times rat made contact with spout0.40.50.50.7-0.7-0.7
Mean time between licks in bursts2.12.93.01.7-1.7-1.7
Mean num. licks in bursts0.40.50.50.7-0.7-0.7
Std. dev. time between licks in bursts1.51.82.11.3-1.4-1.3
Water consumed over 24 hours1.41.61.6-1.31.21.3
Indifference point 0 sec2.33.84.21.9-2.0-1.9
Indifference point AUC0.50.60.7-0.70.80.7
Indifference point function ln k0.00.00.00.1-0.2-0.1
Indifference point function log k0.00.00.00.1-0.2-0.1
Delay discounting total patch changes 0 sec2.03.23.51.7-1.9-1.7
Delay discounting total patch changes 12 sec0.81.11.21.0-1.1-1.0
Delay discounting total patch changes 18 sec2.12.82.91.7-1.7-1.7
Delay discounting total patch changes 24 sec0.00.00.00.2-0.2-0.2
Delay discounting total patch changes 6 sec0.30.50.50.7-0.7-0.7
Delay discounting time to switch 0 sec0.81.11.11.1-1.1-1.1
Delay discounting water rate 0 sec0.40.60.6-0.80.70.8
Delay discounting water rate 12 sec0.71.01.1-1.01.01.0
Delay discounting water rate 18 sec3.24.34.4-2.12.12.1
Delay discounting water rate 24 sec0.10.20.2-0.40.40.4
Delay discounting water rate 6 sec2.13.13.2-1.81.71.8
Locomotor activity1.42.32.5-1.61.31.6
Locomotor testing distance0.00.00.1-0.0-0.20.0
Locomotor testing rearing0.30.40.70.5-0.8-0.5
Light reinforcement 13.36.06.12.5-2.4-2.5
Light reinforcement 21.31.71.91.4-1.2-1.4
Reaction time number correct0.60.81.0-0.91.00.9
Reaction time mean minus median0.10.10.2-0.40.40.4
Reaction time mean minus median AUC0.10.10.1-0.30.30.3
Reaction time num false alarms0.00.10.1-0.20.30.2
Reaction time num false alarms AUC0.00.00.0-0.00.10.0
Reaction time trials correct on left0.60.81.0-0.91.00.9
Reaction time trials on left0.40.60.7-0.70.90.7
Reaction time mean0.10.20.2-0.40.40.4
Reaction time mean AUC0.30.40.4-0.60.60.6
Median of all reaction times0.00.00.0-0.20.20.2
Reaction time omissions2.43.23.21.8-1.8-1.8
Reaction time false alarm rate0.10.10.10.4-0.4-0.4
Reaction time premature initiation rate1.41.92.0-1.41.41.4
Reaction time premature initiations2.13.03.3-1.71.81.7
Std. dev. reaction times0.10.20.2-0.40.40.4
Reaction time trials completed0.40.60.7-0.70.90.7
Reaction time trials AUC0.40.60.7-0.70.80.7
Social response proportion0.10.10.2-0.30.40.3
Social responses1.11.51.51.2-1.2-1.2
Social time0.30.40.50.6-0.7-0.6
Conditioned locomotion0.00.00.00.2-0.1-0.2
Cocaine response after cond. corrected0.30.30.4-0.50.70.5
Cocaine response after cond. not corrected0.20.20.2-0.40.50.4
Cocaine response before conditioning0.20.20.30.4-0.5-0.4
Saline control response0.20.30.30.5-0.6-0.5
Condit. Reinf. active minus inactive responses0.30.40.40.6-0.6-0.6
Condit. Reinf. active-inactive response ratio0.10.20.2-0.40.40.4
Condit. Reinf. active responses0.91.21.21.1-1.1-1.1
Condit. Reinf. inactive responses2.32.93.01.7-1.7-1.7
Condit. Reinf. lever presses0.10.10.20.3-0.4-0.3
Condit. Reinf. lever reinforcers received0.60.80.80.9-0.9-0.9
Pavlov. Cond. lever latency0.30.40.50.7-0.6-0.7
Pavlov. Cond. magazine entry latency0.10.10.10.3-0.4-0.3
Pavlov. Cond. change in total contacts1.52.12.2-1.51.41.5
Pavlov. Cond. index score0.40.60.6-0.80.70.8
Pavlov. Cond. latency score0.30.30.4-0.60.50.6
Pavlov. Cond. lever contacts0.30.40.5-0.70.60.7
Pavlov. Cond. magazine entry number0.10.10.1-0.20.30.2
Pavlov. Cond. intertrial magazine entries6.17.98.02.8-2.8-2.8
Pavlov. Cond. lever-magazine prob. diff.0.50.70.8-0.90.70.9
Pavlov. Cond. response bias0.40.50.6-0.80.60.8
Conditioned reinforcement - actives2.72.72.71.7-1.6-1.7
Conditioned reinforcement - inactives3.03.43.51.8-1.9-1.8
Conditioned locomotion1.01.21.21.1-1.1-1.1
Intermittent access intake day 1-15 change2.12.02.11.4-1.4-1.4
Intermittent access intake escalation1.31.31.31.1-1.1-1.1
Intermittent access intake escalation 20.40.40.40.6-0.6-0.6
Intermitt. access day 1 inactive lever presses0.10.10.10.3-0.3-0.3
Intermitt. access day 15 inactive lever presses0.00.00.00.1-0.2-0.1
Intermitt. access escalation Index0.50.40.5-0.60.70.6
Intermittent access day 1 total infusions0.00.00.00.2-0.2-0.2
Intermittent access day 15 total infusions0.91.01.01.0-1.0-1.0
Intermittent access terminal intake (last 3 days)0.20.20.20.4-0.4-0.4
Intermittent access total infusions0.40.40.40.7-0.6-0.7
Intermittent access day 1 locomotion0.30.30.40.6-0.6-0.6
Intermittent access day 15 total locomotion1.51.61.61.3-1.2-1.3
Intermittent access total locomotion0.50.50.50.7-0.7-0.7
Intermittent access standard deviation1.21.31.31.1-1.2-1.1
Cocaine induced anxiety0.10.10.1-0.40.20.4
Post-drug Anxiety0.50.60.60.7-0.8-0.7
Baseline Anxiety0.80.80.80.9-0.9-0.9
Lifetime Intake0.40.50.50.7-0.7-0.7
Incentive Sensitization - Responses1.01.01.01.0-1.0-1.0
Incentive Sensitization - Breakpoint1.41.41.41.2-1.2-1.2
Progressive ratio test 1 active lever presses0.20.20.3-0.50.60.5
Progressive ratio test 1 breakpoint0.10.10.2-0.30.40.3
Progressive ratio test 1 inactive lever presses1.61.71.71.3-1.3-1.3
Progressive ratio test 2 active lever presses0.20.20.20.5-0.3-0.5
Progressive ratio test 2 breakpoint0.20.30.30.5-0.5-0.5
Progressive ratio test 2 inactive lever presses0.40.40.40.7-0.7-0.7
Total sessions with >9 infusions0.00.00.00.1-0.1-0.1
Short access day 1 total inactive lever presses0.50.60.60.8-0.7-0.8
Short access day 10 total inactive lever presses0.40.40.40.6-0.6-0.6
Short access day 1 total infusions0.10.10.2-0.30.40.3
Short access day 10 total infusions0.00.00.00.2-0.2-0.2
Short access total infusions0.20.20.20.5-0.5-0.5
Short access day 1 locomotion0.20.20.2-0.50.40.5
Short access day 10 total locomotion0.60.70.70.8-0.8-0.8
Short access total locomotion0.80.80.80.9-0.9-0.9
Compulsive drug intake0.00.00.0-0.10.00.1
One hour access (0.3 mA shock)0.30.30.30.5-0.6-0.5
One hour access (shock baseline)0.00.00.0-0.00.00.0
Number of responses in last shaping day0.00.00.0-0.00.00.0
Context. condit. distance diff. score0.80.91.11.0-0.8-1.0
Locomotion velocity, session 10.10.10.1-0.40.40.4
Locomotion distance, session 10.00.10.10.2-0.3-0.2
Locomotion velocity, session 20.00.00.10.2-0.2-0.2
Locomotion distance, session 20.00.10.10.2-0.3-0.2
Locomotion velocity, session 30.40.50.6-0.70.80.7
Locomotion distance, session 30.00.00.00.2-0.1-0.2
Stereotopy head waving bouts, day 30.60.70.7-0.90.80.9
Stereotopy head waving duration, day 32.53.03.1-1.81.71.8
Locomotion velocity, session 74.14.54.72.2-2.0-2.2
Locomotion distance, session 73.14.04.12.0-1.9-2.0
Stereotopy head waving bouts, day 71.82.02.1-1.51.41.5
Stereotopy head waving duration, day 72.53.13.1-1.81.71.8
Locomotion velocity, session 80.00.00.00.10.0-0.1
Locomotion distance, session 80.60.91.01.0-0.9-1.0
Degree of sensitization distance4.44.44.52.1-2.1-2.1
Degree of sensitization stereotypy1.21.41.4-1.21.11.2
Condit. Reinf. active minus inactive responses0.40.40.4-0.70.60.7
Condit. Reinf. active-inactive response ratio2.12.22.3-1.51.51.5
Condit. Reinf. active responses0.00.00.00.0-0.1-0.0
Condit. Reinf. inactive responses3.03.63.81.9-2.0-1.9
Incentive salience index mean0.60.70.8-0.90.80.9
Condit. Reinf. lever presses0.20.20.2-0.50.40.5
Time in familiar zone, hab. session 10.00.00.0-0.20.20.2
Time in novel zone, hab. session 11.21.21.3-1.11.11.1
Total zone transitions, hab. session 10.10.20.2-0.50.40.5
Total locomotion distance, hab. session 10.00.00.00.1-0.2-0.1
Locomotion velocity, hab. session 10.10.20.30.4-0.5-0.4
Time in familiar zone, hab. session 22.22.22.6-1.41.61.4
Time in novel zone, hab. session 20.80.81.00.9-1.0-0.9
Total zone transitions, hab. session 21.31.71.8-1.31.21.3
Total locomotion distance, hab. session 20.20.20.3-0.50.40.5
Locomotion velocity, hab. session 20.50.60.7-0.80.70.8
Novel to familiar place preference ratio1.61.71.91.3-1.4-1.3
Novelty place preference1.31.31.51.1-1.2-1.1
Time in novel zone, NPP test0.60.70.80.8-0.9-0.8
Total zone transitions, NPP test0.20.30.40.5-0.6-0.5
Total locomotion distance, NPP test2.83.94.21.9-2.0-1.9
Locomotion velocity, NPP test2.73.84.11.9-2.0-1.9
Pavlov. Cond. lever latency0.00.00.0-0.00.10.0
Pavlov. Cond. magazine entry latency0.00.10.10.2-0.2-0.2
Pavlov. Cond. change in total contacts0.91.01.0-1.01.01.0
Pavlov. Cond. index score0.00.10.1-0.20.20.2
Pavlov. Cond. latency score0.00.00.0-0.10.10.1
Pavlov. Cond. lever contacts0.00.00.00.1-0.1-0.1
Pavlov. Cond. magazine entry number0.40.50.50.7-0.7-0.7
Pavlov. Cond. intertrial magazine entries0.10.10.10.3-0.4-0.3
Pavlov. Cond. lever-magazine prob. diff.0.10.20.2-0.40.40.4
Pavlov. Cond. response bias0.10.10.1-0.40.40.4
Bone: apparent density1.42.32.41.5-1.5-1.5
Bone surface0.61.01.11.0-1.0-1.0
Bone volume0.71.21.31.1-1.1-1.1
Bone: connectivity density2.84.34.32.1-2.1-2.1
Bone: cortical apparent density0.00.00.00.2-0.0-0.2
Bone: cortical area0.00.00.00.0-0.1-0.0
Bone: cortical porosity1.41.51.6-1.31.21.3
Bone: cortical porosity0.50.60.6-0.80.70.8
Bone: cortical thickness0.00.00.00.1-0.2-0.1
Bone: cortical thickness0.00.00.00.2-0.1-0.2
Bone: cortical tissue density0.00.00.00.2-0.0-0.2
Bone: elastic displacement0.60.70.80.8-0.9-0.8
Bone: elastic work0.30.40.60.6-0.8-0.6
Bone: endosteal estimation0.10.30.3-0.60.50.6
Bone: endosteal perimeter0.10.10.2-0.40.30.4
Bone: final force0.10.20.2-0.50.40.5
Bone: final moment0.10.20.2-0.40.30.4
Bone: marrow area0.10.20.2-0.40.40.4
Bone: maximum diameter0.40.70.7-0.80.80.8
Bone: maximum force0.20.40.5-0.70.60.7
Bone: maximum moment0.10.20.3-0.50.40.5
Bone: minimum diameter0.10.30.3-0.60.40.6
Bone: periosteal estimation0.00.10.1-0.30.30.3
Bone: periosteal perimeter0.00.00.0-0.20.10.2
Bone: post-yield work0.10.20.20.4-0.4-0.4
Bone: stiffness0.61.01.0-1.01.01.0
Bone: tissue strength0.10.10.10.2-0.3-0.2
Bone: trabecular number2.53.94.02.0-2.0-2.0
Bone: trabecular spacing2.53.23.2-1.81.81.8
Bone: trabecular thickness1.31.51.61.2-1.3-1.2
Bone: trabecular tissue density1.31.81.8-1.41.31.4
Breakpoint value in progressive ratio session0.00.00.0-0.20.20.2
Distance traveled before self-admin1.01.11.2-1.11.01.1
Distance traveled after self-admin2.32.62.6-1.61.61.6
Delta time in closed arm before/after self-admin2.12.12.41.4-1.5-1.4
Delta time in open arm before/after self-admin0.00.00.10.3-0.1-0.2
Diff in mean of infusions in LGA sessions2.73.03.1-1.71.81.7
Extinction: sum of active levers before priming2.72.73.01.6-1.6-1.7
Active lever presses in extinction session 60.40.40.40.7-0.6-0.6
Delta distance traveled before/after self-admin2.42.62.9-1.61.71.6
Delta ambulatory time before/after self-admin2.32.52.7-1.51.71.5
Time in closed arm before self-admin1.92.22.5-1.51.61.4
Time in closed arm after self-admin0.70.70.7-0.80.80.8
Time in open arm before self-admin0.10.10.1-0.40.30.4
Time in open arm after self-admin0.10.10.10.4-0.3-0.4
Sum of active levers in priming session hrs 5-60.00.00.00.2-0.2-0.2
Time to tail flick, vehicle, before self-admin0.90.90.90.9-0.9-1.0
Time to tail flick, vehicle, after self-admin2.02.22.3-1.41.51.5
Time to tail flick, test, before self-admin1.01.01.11.0-1.0-1.0
Time to tail flick, test, after self-admin3.23.33.41.8-1.8-1.8
Delta time to tail flick, vehicle, before/after SA0.40.40.4-0.60.70.7
Delta time to tail flick, test, before/after SA0.20.20.30.5-0.4-0.5
Ambulatory time before self-admin0.50.60.6-0.80.70.8
Ambulatory time after self-admin3.74.14.2-2.02.12.0
Total heroin consumption0.30.40.4-0.60.60.7
Area under the delay curve0.00.00.0-0.10.10.1
Delay disc. indifference point, 0s delay0.40.50.50.6-0.7-0.7
Delay disc. indifference point, 16s delay0.30.30.30.5-0.5-0.5
Delay disc. indifference point, 2s delay1.31.51.6-1.31.21.2
Delay disc. indifference point, 24s delay0.20.20.2-0.40.40.4
Delay disc. indifference point, 4s delay1.51.51.6-1.21.31.2
Delay disc. indifference point, 8s delay0.00.00.10.2-0.2-0.2
Delay discount exponential model param0.10.20.20.4-0.4-0.4
Delay discount hyperbolic model param0.40.40.50.7-0.7-0.7
Fecal boli incidents, locomotor time 10.70.81.0-1.00.90.8
Change in fecal boli incidents, locomotor task0.10.10.1-0.30.40.3
Time >=10cm from walls, locomotor time 10.90.91.10.9-1.1-0.9
Bouts of movement, locomotor time 15.15.75.9-2.42.42.4
Total resting periods, locomotor time 15.15.65.8-2.32.42.4
Rest time, locomotor task time 13.33.63.8-1.81.91.9
Distance moved, locomotor task time 13.23.43.61.9-1.9-1.8
Vertical activity count, locomotor time 11.21.31.31.1-1.1-1.1
Time >=10cm from walls, locomotor time 20.40.40.4-0.60.60.7
Bouts of movement, locomotor time 24.14.44.5-2.02.12.1
Total resting periods, locomotor time 24.64.95.1-2.22.32.2
Rest time, locomotor task time 21.01.21.6-1.01.31.0
Distance moved, locomotor task time 22.83.33.71.8-1.9-1.7
Vertical activity count, locomotor time 20.40.40.50.6-0.7-0.6
Weight adjusted by age1.82.02.1-1.41.41.4
Seeking ratio, delayed vs. immediate footshock1.01.11.31.0-1.1-1.0
Locomotion in novel chamber0.20.20.30.4-0.5-0.4
Locomotion in novel chamber post-restriction0.70.80.9-0.90.90.9
Progressive ratio0.10.10.20.4-0.4-0.4
Food seeking constrained by brief footshock1.41.82.1-1.31.41.3
Seeking ratio, punishment vs. effort1.01.21.3-1.11.21.1
Run reversals in cocaine runway, females4.24.24.32.1-2.1-2.0
Run reversals in cocaine runway, males2.52.42.4-1.51.51.5
Latency to leave start box in cocaine runway0.60.70.7-0.80.80.8
Latency to leave start box in cocaine runway, F1.41.61.7-1.31.31.2
Latency to leave start box in cocaine runway, M1.31.21.31.1-1.1-1.1
Cd content in liver0.30.40.40.6-0.6-0.6
Co content in liver3.94.64.9-2.12.22.1
Cu content in liver0.50.60.7-0.80.80.8
Fe content in liver2.12.52.51.6-1.6-1.6
K content in liver0.60.60.60.8-0.8-0.8
Mg content in liver1.21.31.31.1-1.1-1.1
Mn content in liver2.12.42.41.5-1.6-1.5
Na content in liver0.50.60.7-0.80.60.8
Rb content in liver0.20.30.30.5-0.4-0.5
Se content in liver1.01.21.51.0-1.2-1.0
Sr content in liver0.50.50.50.7-0.7-0.7
Zn content in liver0.91.01.1-1.00.91.0