Nol6

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000010409 0.05 0.04 1.3e-04 0.03 0.03 0.03 0.03 1.7e-04 5.5e-04 2.0e-04 6.5e-04
2 Brain gene expression ENSRNOG00000010409 0.07 0.05 1.1e-05 0.06 0.05 0.05 0.05 2.0e-06 2.0e-05 1.9e-05 2.1e-05
3 Liver gene expression ENSRNOG00000010409 0.21 0.13 0.0e+00 0.08 0.12 0.13 0.13 4.2e-09 1.5e-13 6.4e-14 5.1e-14

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail0.72.25.12.3-0.9-0.8
BMI without tail1.94.010.93.30.60.8
Body weight1.14.814.13.80.50.4
Epididymis fat weight0.51.11.91.40.90.9
Glucose0.30.51.01.00.30.5
Heart weight0.30.51.11.00.40.5
Left kidney weight0.82.33.31.81.41.3
Right kidney weight0.30.91.00.91.01.0
Tail length1.13.37.72.81.11.1
Length with tail0.82.84.12.01.61.4
Length without tail0.10.20.4-0.60.50.3
Liver weight, left0.30.51.21.10.30.4
Liver weight, right0.00.10.10.00.30.2
Parametrial fat weight0.20.40.50.50.70.7
Retroperitoneal fat weight0.10.20.3-0.4-0.5-0.5
Intraocular pressure1.01.53.51.90.70.7
Extensor digitorum longus weight2.28.825.45.00.70.8
Soleus weight1.75.07.90.32.82.6
Tibialis anterior weight3.612.331.15.61.81.6
Tibia length0.72.13.10.61.81.6
Number of licking bursts2.12.57.62.8-0.2-0.1
Food consumed during 24 hour testing period0.91.11.71.30.90.9
Times rat made contact with spout0.40.40.70.8-0.6-0.6
Mean time between licks in bursts0.10.20.6-0.8-0.1-0.1
Mean num. licks in bursts1.11.43.7-1.9-0.4-0.5
Std. dev. time between licks in bursts0.20.20.3-0.6-0.4-0.4
Water consumed over 24 hours0.60.82.21.50.10.1
Indifference point 0 sec4.16.69.61.13.13.0
Indifference point AUC2.02.46.12.50.70.7
Indifference point function ln k0.50.72.1-1.5-0.1-0.2
Indifference point function log k0.50.72.1-1.5-0.1-0.2
Delay discounting total patch changes 0 sec3.86.28.31.62.92.8
Delay discounting total patch changes 12 sec0.60.82.11.50.40.4
Delay discounting total patch changes 18 sec0.70.91.20.61.11.1
Delay discounting total patch changes 24 sec1.82.33.01.71.41.4
Delay discounting total patch changes 6 sec3.24.95.32.02.32.3
Delay discounting time to switch 0 sec1.72.73.9-2.0-1.4-1.4
Delay discounting water rate 0 sec2.03.23.61.61.91.9
Delay discounting water rate 12 sec0.20.30.40.40.60.6
Delay discounting water rate 18 sec0.50.70.90.6-0.9-0.9
Delay discounting water rate 24 sec0.81.11.7-0.2-1.2-1.3
Delay discounting water rate 6 sec0.60.82.51.60.10.1
Locomotor activity0.00.10.10.3-0.3-0.2
Locomotor testing distance0.30.40.60.30.80.8
Locomotor testing rearing0.60.92.11.40.60.5
Light reinforcement 14.27.78.62.52.92.9
Light reinforcement 25.16.79.11.53.03.0
Reaction time number correct0.20.40.50.10.70.7
Reaction time mean minus median3.54.67.00.1-2.6-2.6
Reaction time mean minus median AUC2.43.04.20.8-2.1-2.0
Reaction time num false alarms0.70.91.40.1-1.2-1.2
Reaction time num false alarms AUC0.30.50.70.8-0.6-0.6
Reaction time trials correct on left0.20.40.50.10.70.7
Reaction time trials on left0.20.30.50.00.70.7
Reaction time mean2.73.74.2-1.7-2.0-2.1
Reaction time mean AUC3.34.45.0-1.9-2.2-2.2
Median of all reaction times2.12.95.2-2.3-1.2-1.4
Reaction time omissions0.50.71.7-1.3-0.5-0.5
Reaction time false alarm rate0.60.81.30.1-1.1-1.1
Reaction time premature initiation rate1.92.54.0-2.0-1.4-1.3
Reaction time premature initiations1.01.53.1-1.8-0.9-0.8
Std. dev. reaction times3.64.97.0-0.8-2.6-2.6
Reaction time trials completed0.20.30.50.00.70.7
Reaction time trials AUC0.20.30.40.00.60.7
Social response proportion1.21.33.5-1.9-0.5-0.5
Social responses0.20.20.60.80.20.2
Social time0.40.50.7-0.10.80.8
Conditioned locomotion0.81.01.50.21.21.2
Cocaine response after cond. corrected2.22.53.6-0.81.81.9
Cocaine response after cond. not corrected2.73.04.5-0.62.02.1
Cocaine response before conditioning0.30.41.01.0-0.2-0.2
Saline control response2.02.73.51.91.51.6
Condit. Reinf. active minus inactive responses0.20.20.60.7-0.2-0.2
Condit. Reinf. active-inactive response ratio0.10.10.2-0.1-0.4-0.3
Condit. Reinf. active responses0.60.82.51.6-0.1-0.0
Condit. Reinf. inactive responses1.31.63.61.9-0.7-0.9
Condit. Reinf. lever presses1.42.02.41.5-1.3-1.4
Condit. Reinf. lever reinforcers received0.81.13.21.8-0.1-0.0
Pavlov. Cond. lever latency1.72.32.4-1.61.51.5
Pavlov. Cond. magazine entry latency0.50.50.5-0.7-0.7-0.7
Pavlov. Cond. change in total contacts2.33.24.80.3-2.2-2.2
Pavlov. Cond. index score1.21.62.5-0.0-1.5-1.6
Pavlov. Cond. latency score1.41.82.80.2-1.6-1.7
Pavlov. Cond. lever contacts0.81.11.21.0-1.1-1.1
Pavlov. Cond. magazine entry number1.72.13.10.31.81.7
Pavlov. Cond. intertrial magazine entries0.30.40.60.80.50.6
Pavlov. Cond. lever-magazine prob. diff.1.41.82.7-0.1-1.6-1.6
Pavlov. Cond. response bias0.91.31.90.4-1.3-1.4
Conditioned reinforcement - actives0.40.40.70.9-0.5-0.5
Conditioned reinforcement - inactives0.40.41.21.10.10.1
Conditioned locomotion0.20.20.70.80.00.0
Intermittent access intake day 1-15 change0.80.81.10.5-1.0-1.0
Intermittent access intake escalation0.30.30.60.8-0.4-0.4
Intermittent access intake escalation 21.11.11.20.9-1.1-1.1
Intermitt. access day 1 inactive lever presses0.40.50.80.90.60.6
Intermitt. access day 15 inactive lever presses0.60.60.60.70.80.8
Intermitt. access escalation Index0.80.71.11.10.70.7
Intermittent access day 1 total infusions0.30.40.4-0.60.60.6
Intermittent access day 15 total infusions0.10.10.40.60.10.1
Intermittent access terminal intake (last 3 days)0.50.61.61.30.20.2
Intermittent access total infusions0.40.40.80.90.40.4
Intermittent access day 1 locomotion0.70.71.9-1.40.40.4
Intermittent access day 15 total locomotion0.40.41.3-1.2-0.0-0.0
Intermittent access total locomotion0.70.81.2-1.1-0.7-0.7
Intermittent access standard deviation0.10.10.30.6-0.2-0.2
Cocaine induced anxiety0.10.20.4-0.60.30.3
Post-drug Anxiety0.30.30.60.80.30.3
Baseline Anxiety0.40.40.50.7-0.6-0.6
Lifetime Intake1.21.31.61.31.11.1
Incentive Sensitization - Responses0.40.40.50.70.60.6
Incentive Sensitization - Breakpoint0.20.20.20.50.50.5
Progressive ratio test 1 active lever presses0.60.61.01.00.60.6
Progressive ratio test 1 breakpoint0.70.81.21.10.70.7
Progressive ratio test 1 inactive lever presses2.22.32.51.51.61.6
Progressive ratio test 2 active lever presses0.80.91.10.71.01.0
Progressive ratio test 2 breakpoint0.50.50.70.40.80.8
Progressive ratio test 2 inactive lever presses0.50.61.21.10.50.5
Total sessions with >9 infusions1.31.41.80.71.31.3
Short access day 1 total inactive lever presses2.32.64.42.11.31.3
Short access day 10 total inactive lever presses0.30.30.70.90.40.4
Short access day 1 total infusions3.43.64.82.21.71.7
Short access day 10 total infusions1.31.41.90.71.41.4
Short access total infusions1.71.92.21.11.51.5
Short access day 1 locomotion0.40.50.5-0.70.70.7
Short access day 10 total locomotion1.21.32.2-1.5-0.9-1.0
Short access total locomotion0.10.10.1-0.40.30.3
Compulsive drug intake0.20.20.20.10.50.5
One hour access (0.3 mA shock)0.70.80.90.81.01.0
One hour access (shock baseline)1.01.21.40.81.21.2
Number of responses in last shaping day3.93.95.41.02.32.3
Context. condit. distance diff. score0.10.10.2-0.4-0.3-0.4
Locomotion velocity, session 17.27.711.50.93.33.4
Locomotion distance, session 12.12.74.00.52.02.0
Locomotion velocity, session 20.50.61.41.2-0.5-0.5
Locomotion distance, session 21.72.52.91.71.61.5
Locomotion velocity, session 31.61.93.30.51.81.5
Locomotion distance, session 31.71.82.41.51.41.0
Stereotopy head waving bouts, day 31.11.31.80.51.41.3
Stereotopy head waving duration, day 30.20.30.40.20.60.7
Locomotion velocity, session 70.00.00.0-0.20.0-0.1
Locomotion distance, session 70.20.30.30.50.50.4
Stereotopy head waving bouts, day 71.31.54.02.00.50.4
Stereotopy head waving duration, day 70.60.71.71.30.50.4
Locomotion velocity, session 81.21.52.30.41.51.4
Locomotion distance, session 80.91.32.10.61.41.3
Degree of sensitization distance0.60.61.0-1.0-0.8-0.5
Degree of sensitization stereotypy0.60.61.81.30.10.0
Condit. Reinf. active minus inactive responses0.10.20.50.7-0.1-0.1
Condit. Reinf. active-inactive response ratio0.50.51.1-1.0-0.6-0.4
Condit. Reinf. active responses0.91.13.21.8-0.1-0.1
Condit. Reinf. inactive responses1.11.33.61.9-0.3-0.5
Incentive salience index mean1.72.15.62.40.50.6
Condit. Reinf. lever presses5.47.216.34.01.61.7
Time in familiar zone, hab. session 15.14.86.7-1.0-2.6-2.6
Time in novel zone, hab. session 13.83.75.5-0.72.32.3
Total zone transitions, hab. session 10.00.00.1-0.30.1-0.0
Total locomotion distance, hab. session 10.81.22.00.2-1.2-1.4
Locomotion velocity, hab. session 10.71.01.31.0-0.9-1.1
Time in familiar zone, hab. session 22.42.53.1-1.2-1.8-1.7
Time in novel zone, hab. session 22.02.03.0-0.41.71.7
Total zone transitions, hab. session 21.41.82.60.81.61.4
Total locomotion distance, hab. session 20.30.40.80.90.60.3
Locomotion velocity, hab. session 20.30.40.80.90.50.2
Novel to familiar place preference ratio1.92.02.6-1.61.31.3
Novelty place preference1.92.03.7-1.91.01.1
Time in novel zone, NPP test2.32.44.5-2.11.11.2
Total zone transitions, NPP test1.42.03.00.91.71.5
Total locomotion distance, NPP test1.62.22.71.51.61.3
Locomotion velocity, NPP test1.31.92.71.61.41.0
Pavlov. Cond. lever latency3.84.812.8-3.6-0.9-0.9
Pavlov. Cond. magazine entry latency0.10.10.30.5-0.10.0
Pavlov. Cond. change in total contacts1.51.63.51.90.70.8
Pavlov. Cond. index score1.21.54.52.10.20.3
Pavlov. Cond. latency score1.21.54.32.10.20.3
Pavlov. Cond. lever contacts2.42.87.72.80.60.7
Pavlov. Cond. magazine entry number0.20.20.6-0.8-0.0-0.0
Pavlov. Cond. intertrial magazine entries0.10.10.30.5-0.2-0.2
Pavlov. Cond. lever-magazine prob. diff.1.01.23.61.9-0.1-0.0
Pavlov. Cond. response bias1.11.43.81.90.40.4
Bone: apparent density0.50.81.81.4-0.6-0.6
Bone surface0.30.61.31.10.50.5
Bone volume0.20.41.11.10.00.0
Bone: connectivity density0.40.60.70.8-0.7-0.7
Bone: cortical apparent density1.51.92.7-0.5-1.7-1.7
Bone: cortical area0.91.32.81.7-0.7-0.7
Bone: cortical porosity0.20.20.4-0.6-0.3-0.3
Bone: cortical porosity0.00.00.00.1-0.1-0.1
Bone: cortical thickness1.01.72.20.8-1.5-1.5
Bone: cortical thickness0.60.71.0-0.4-1.0-1.0
Bone: cortical tissue density1.31.62.3-0.5-1.5-1.5
Bone: elastic displacement3.13.58.0-2.8-1.1-1.1
Bone: elastic work4.45.76.6-2.0-2.6-2.6
Bone: endosteal estimation0.81.62.11.41.21.2
Bone: endosteal perimeter1.12.32.51.61.51.5
Bone: final force0.60.92.71.7-0.1-0.1
Bone: final moment0.40.71.91.4-0.4-0.4
Bone: marrow area0.61.32.21.51.01.0
Bone: maximum diameter0.71.34.02.00.00.1
Bone: maximum force1.32.26.62.6-0.2-0.2
Bone: maximum moment1.01.74.82.2-0.5-0.4
Bone: minimum diameter0.10.30.3-0.5-0.6-0.6
Bone: periosteal estimation0.61.13.11.80.40.4
Bone: periosteal perimeter0.81.21.31.11.11.1
Bone: post-yield work1.31.83.11.71.11.1
Bone: stiffness1.72.67.82.8-0.2-0.2
Bone: tissue strength0.10.10.20.4-0.1-0.1
Bone: trabecular number0.71.01.61.3-0.9-0.9
Bone: trabecular spacing0.30.30.5-0.1-0.7-0.7
Bone: trabecular thickness0.20.20.2-0.4-0.4-0.4
Bone: trabecular tissue density1.01.54.42.10.00.0
Breakpoint value in progressive ratio session1.31.42.1-0.31.51.4
Distance traveled before self-admin3.94.18.62.91.41.4
Distance traveled after self-admin1.01.12.51.6-0.6-0.6
Delta time in closed arm before/after self-admin0.70.60.80.9-0.7-0.7
Delta time in open arm before/after self-admin0.20.10.2-0.30.40.4
Diff in mean of infusions in LGA sessions0.10.10.1-0.3-0.3-0.3
Extinction: sum of active levers before priming0.40.41.0-1.0-0.3-0.3
Active lever presses in extinction session 60.70.72.0-1.40.20.2
Delta distance traveled before/after self-admin0.30.30.4-0.4-0.7-0.7
Delta ambulatory time before/after self-admin0.50.60.7-0.8-0.7-0.7
Time in closed arm before self-admin1.71.95.4-2.3-0.4-0.4
Time in closed arm after self-admin0.30.40.8-0.9-0.4-0.4
Time in open arm before self-admin2.93.04.82.21.51.5
Time in open arm after self-admin1.51.72.61.61.11.1
Sum of active levers in priming session hrs 5-61.71.73.4-1.80.90.9
Time to tail flick, vehicle, before self-admin0.91.02.8-1.7-0.2-0.2
Time to tail flick, vehicle, after self-admin0.00.00.0-0.20.10.1
Time to tail flick, test, before self-admin0.20.20.40.6-0.4-0.4
Time to tail flick, test, after self-admin0.60.60.8-0.3-0.9-0.9
Delta time to tail flick, vehicle, before/after SA0.20.20.40.70.20.2
Delta time to tail flick, test, before/after SA0.30.30.7-0.9-0.2-0.2
Ambulatory time before self-admin3.73.96.32.51.61.7
Ambulatory time after self-admin0.50.51.31.10.40.4
Total heroin consumption0.20.30.4-0.30.60.6
Area under the delay curve0.50.50.7-0.80.60.7
Delay disc. indifference point, 0s delay0.60.61.4-1.20.50.5
Delay disc. indifference point, 16s delay1.51.52.1-0.71.41.4
Delay disc. indifference point, 2s delay0.30.30.60.1-0.8-0.6
Delay disc. indifference point, 24s delay0.20.20.5-0.70.10.2
Delay disc. indifference point, 4s delay0.10.10.3-0.6-0.2-0.2
Delay disc. indifference point, 8s delay0.00.00.1-0.20.10.2
Delay discount exponential model param0.40.50.60.8-0.5-0.7
Delay discount hyperbolic model param0.40.40.50.7-0.5-0.7
Fecal boli incidents, locomotor time 10.60.61.8-1.4-0.1-0.1
Change in fecal boli incidents, locomotor task1.00.91.61.30.80.8
Time >=10cm from walls, locomotor time 10.20.20.30.30.60.3
Bouts of movement, locomotor time 10.50.51.0-1.0-0.5-0.6
Total resting periods, locomotor time 11.21.41.8-1.3-1.1-1.1
Rest time, locomotor task time 13.43.74.8-1.4-2.2-2.1
Distance moved, locomotor task time 13.03.33.71.91.81.7
Vertical activity count, locomotor time 12.22.32.71.41.51.6
Time >=10cm from walls, locomotor time 20.20.20.40.20.60.4
Bouts of movement, locomotor time 20.30.30.60.8-0.2-0.5
Total resting periods, locomotor time 20.20.20.30.5-0.3-0.6
Rest time, locomotor task time 20.40.40.6-0.5-0.6-0.8
Distance moved, locomotor task time 20.10.10.20.3-0.4-0.2
Vertical activity count, locomotor time 20.10.10.30.20.20.5
Weight adjusted by age1.92.13.00.61.71.7
Seeking ratio, delayed vs. immediate footshock0.91.13.21.8-0.00.0
Locomotion in novel chamber0.10.20.2-0.3-0.5-0.5
Locomotion in novel chamber post-restriction1.41.71.91.2-1.4-1.3
Progressive ratio0.30.40.4-0.60.60.6
Food seeking constrained by brief footshock5.36.512.53.51.81.9
Seeking ratio, punishment vs. effort1.72.15.92.40.40.4
Run reversals in cocaine runway, females0.40.40.4-0.5-0.6-0.7
Run reversals in cocaine runway, males0.10.10.1-0.1-0.3-0.3
Latency to leave start box in cocaine runway0.30.30.90.90.00.0
Latency to leave start box in cocaine runway, F0.30.40.5-0.10.70.7
Latency to leave start box in cocaine runway, M1.21.13.01.70.50.5
Cd content in liver0.80.91.20.7-1.1-1.1
Co content in liver0.60.70.7-0.80.80.9
Cu content in liver0.91.11.3-1.2-1.0-0.9
Fe content in liver2.73.24.80.82.12.2
K content in liver0.40.40.5-0.50.70.7
Mg content in liver0.40.41.3-1.20.10.0
Mn content in liver0.60.71.10.6-1.1-0.9
Na content in liver0.40.51.4-1.2-0.2-0.1
Rb content in liver1.31.64.8-2.20.30.1
Se content in liver1.11.32.01.4-1.0-0.9
Sr content in liver0.50.40.50.7-0.6-0.6
Zn content in liver0.70.71.1-0.2-1.1-1.0