Kcnmb2

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000010094 0.04 0.04 8.8e-03 0 -0 -0 -0 3.0e-01 8.6e-01 9.0e-01 6.9e-01
2 NAcc alternative polyA ENSRNOT00000079254 0.03 0.02 5.6e-03 0.01 0.02 0 0.01 4.5e-02 2.3e-02 1.4e-01 2.5e-02
3 NAcc alternative polyA ENSRNOT00000083676 0.03 0.02 8.2e-03 0.01 0.01 -0 0.01 5.5e-02 3.3e-02 4.0e-01 3.6e-02
4 NAcc gene expression ENSRNOG00000010094 0.05 0.05 5.6e-03 0.03 0.02 0.02 0.02 1.4e-03 1.4e-02 2.2e-02 7.5e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail0.93.03.9-1.61.7-1.7-2.0
BMI without tail1.53.14.1-1.31.8-1.8-2.0
Body weight0.31.23.5-1.90.3-0.2-1.0
Epididymis fat weight0.51.11.6-1.3-1.21.20.2
Glucose1.32.03.0-0.0-1.71.71.4
Heart weight0.30.50.70.30.8-0.8-0.6
Left kidney weight0.10.30.4-0.40.6-0.6-0.5
Right kidney weight0.51.42.0-1.11.2-1.1-1.4
Tail length0.00.10.10.4-0.10.10.3
Length with tail0.20.70.90.0-0.90.90.9
Length without tail1.12.33.20.9-1.71.61.8
Liver weight, left1.11.84.5-2.1-1.11.2-0.5
Liver weight, right0.00.10.10.1-0.30.30.3
Parametrial fat weight0.20.30.9-0.9-0.10.2-0.5
Retroperitoneal fat weight0.10.40.7-0.3-0.80.80.3
Intraocular pressure0.50.71.1-0.0-1.01.00.7
Extensor digitorum longus weight0.20.91.5-1.20.6-0.6-1.2
Soleus weight6.418.731.11.45.5-5.6-3.4
Tibialis anterior weight0.31.11.7-0.71.1-1.0-1.3
Tibia length3.28.911.61.0-3.43.43.4
Number of licking bursts1.92.33.0-1.51.4-1.3-1.7
Food consumed during 24 hour testing period0.10.10.3-0.5-0.00.0-0.4
Times rat made contact with spout0.70.81.4-0.4-1.21.20.6
Mean time between licks in bursts1.82.64.61.4-1.41.42.1
Mean num. licks in bursts1.92.32.81.0-1.71.61.6
Std. dev. time between licks in bursts0.50.60.8-0.2-0.90.90.8
Water consumed over 24 hours0.00.00.0-0.0-0.10.10.1
Indifference point 0 sec0.50.81.4-0.41.2-1.2-0.7
Indifference point AUC3.54.16.2-2.51.5-1.4-2.5
Indifference point function ln k2.33.24.61.9-1.61.52.1
Indifference point function log k2.33.24.61.9-1.61.52.1
Delay discounting total patch changes 0 sec0.61.01.6-0.51.3-1.3-0.8
Delay discounting total patch changes 12 sec1.52.02.4-1.31.4-1.4-1.5
Delay discounting total patch changes 18 sec1.62.22.6-1.61.4-1.3-1.6
Delay discounting total patch changes 24 sec4.55.77.4-1.02.7-2.7-2.6
Delay discounting total patch changes 6 sec3.55.36.9-1.42.6-2.6-2.4
Delay discounting time to switch 0 sec0.10.20.50.7-0.30.30.4
Delay discounting water rate 0 sec0.20.30.5-0.30.7-0.7-0.5
Delay discounting water rate 12 sec0.20.20.50.7-0.20.20.6
Delay discounting water rate 18 sec0.30.41.0-1.0-0.50.50.0
Delay discounting water rate 24 sec0.91.21.7-0.41.3-1.3-1.1
Delay discounting water rate 6 sec0.00.10.3-0.50.0-0.0-0.1
Locomotor activity1.93.04.10.9-1.91.92.0
Locomotor testing distance0.61.01.50.3-1.21.21.1
Locomotor testing rearing0.50.71.41.2-0.50.41.0
Light reinforcement 11.12.13.92.0-1.00.91.6
Light reinforcement 20.00.10.10.3-0.20.30.3
Reaction time number correct1.92.74.5-2.1-1.81.80.1
Reaction time mean minus median0.10.10.5-0.7-0.10.1-0.3
Reaction time mean minus median AUC0.30.40.7-0.80.5-0.4-0.8
Reaction time num false alarms0.00.00.0-0.20.2-0.2-0.2
Reaction time num false alarms AUC0.00.10.2-0.50.0-0.0-0.2
Reaction time trials correct on left1.92.74.5-2.1-1.81.80.1
Reaction time trials on left2.02.84.2-2.1-1.81.90.2
Reaction time mean1.11.52.5-0.2-1.61.61.1
Reaction time mean AUC0.91.31.90.1-1.41.41.1
Median of all reaction times1.11.52.3-0.0-1.51.51.2
Reaction time omissions1.41.82.91.6-1.00.91.7
Reaction time false alarm rate0.50.71.10.71.0-1.0-0.3
Reaction time premature initiation rate0.40.50.90.50.9-0.9-0.4
Reaction time premature initiations0.10.20.5-0.7-0.20.3-0.2
Std. dev. reaction times0.10.10.3-0.5-0.40.40.0
Reaction time trials completed2.02.84.2-2.1-1.81.90.2
Reaction time trials AUC1.92.73.8-2.0-1.81.90.2
Social response proportion2.32.53.80.3-1.91.91.6
Social responses0.00.00.1-0.20.2-0.2-0.3
Social time3.03.95.11.2-2.22.12.3
Conditioned locomotion0.60.72.31.5-0.10.00.8
Cocaine response after cond. corrected0.20.20.40.6-0.20.10.5
Cocaine response after cond. not corrected0.30.40.50.2-0.70.70.7
Cocaine response before conditioning0.00.00.1-0.3-0.20.2-0.1
Saline control response0.50.60.80.5-0.90.90.8
Condit. Reinf. active minus inactive responses1.01.22.0-0.1-1.41.40.9
Condit. Reinf. active-inactive response ratio1.01.11.60.3-1.31.21.1
Condit. Reinf. active responses1.92.74.4-0.9-2.12.11.1
Condit. Reinf. inactive responses1.21.62.5-1.6-1.31.40.3
Condit. Reinf. lever presses0.30.40.5-0.5-0.70.70.4
Condit. Reinf. lever reinforcers received1.82.64.2-0.8-2.02.01.1
Pavlov. Cond. lever latency0.50.71.91.4-0.30.30.8
Pavlov. Cond. magazine entry latency0.40.51.5-1.20.2-0.1-0.5
Pavlov. Cond. change in total contacts0.71.02.3-1.5-0.91.00.1
Pavlov. Cond. index score0.60.82.8-1.70.2-0.1-0.7
Pavlov. Cond. latency score0.70.93.1-1.80.1-0.0-0.7
Pavlov. Cond. lever contacts0.40.50.8-0.90.6-0.6-0.7
Pavlov. Cond. magazine entry number0.81.02.31.5-0.60.61.0
Pavlov. Cond. intertrial magazine entries0.10.20.20.5-0.40.30.4
Pavlov. Cond. lever-magazine prob. diff.0.81.03.4-1.80.1-0.0-0.7
Pavlov. Cond. response bias0.30.40.9-0.90.5-0.5-0.5
Conditioned reinforcement - actives0.40.40.60.6-0.70.70.8
Conditioned reinforcement - inactives0.10.10.30.5-0.20.20.5
Conditioned locomotion0.20.20.4-0.1-0.60.60.5
Intermittent access intake day 1-15 change0.30.30.50.30.7-0.7-0.3
Intermittent access intake escalation0.20.20.40.00.6-0.6-0.3
Intermittent access intake escalation 20.10.10.2-0.1-0.40.40.5
Intermitt. access day 1 inactive lever presses0.20.20.40.5-0.30.30.6
Intermitt. access day 15 inactive lever presses0.50.61.00.0-0.80.91.0
Intermitt. access escalation Index0.00.00.0-0.2-0.00.0-0.0
Intermittent access day 1 total infusions2.22.54.0-0.7-2.02.01.2
Intermittent access day 15 total infusions0.30.31.0-1.0-0.40.5-0.1
Intermittent access terminal intake (last 3 days)1.31.41.9-1.3-1.31.40.5
Intermittent access total infusions1.11.21.7-1.3-1.21.30.4
Intermittent access day 1 locomotion0.40.50.7-0.5-0.80.90.4
Intermittent access day 15 total locomotion0.80.91.1-0.51.1-1.0-1.0
Intermittent access total locomotion0.40.41.3-1.20.00.0-0.5
Intermittent access standard deviation0.10.10.20.50.2-0.20.2
Cocaine induced anxiety0.40.40.9-1.0-0.60.60.0
Post-drug Anxiety0.91.01.6-0.4-1.21.30.8
Baseline Anxiety0.20.20.50.70.4-0.40.1
Lifetime Intake1.51.62.4-1.2-1.51.50.7
Incentive Sensitization - Responses0.90.82.0-1.40.4-0.3-1.0
Incentive Sensitization - Breakpoint0.80.82.2-1.50.2-0.2-0.9
Progressive ratio test 1 active lever presses1.01.01.6-0.2-1.21.20.9
Progressive ratio test 1 breakpoint1.11.11.7-0.2-1.31.31.0
Progressive ratio test 1 inactive lever presses0.80.81.20.1-1.01.01.1
Progressive ratio test 2 active lever presses0.60.72.0-1.4-0.50.6-0.3
Progressive ratio test 2 breakpoint0.50.61.9-1.4-0.20.3-0.5
Progressive ratio test 2 inactive lever presses0.40.51.0-1.0-0.70.70.2
Total sessions with >9 infusions1.41.62.00.6-1.41.41.4
Short access day 1 total inactive lever presses0.60.71.2-0.21.1-1.1-0.7
Short access day 10 total inactive lever presses1.01.11.7-0.11.3-1.3-1.0
Short access day 1 total infusions0.50.60.8-0.5-0.90.90.6
Short access day 10 total infusions1.01.11.7-0.5-1.31.30.8
Short access total infusions1.41.62.5-0.6-1.51.61.0
Short access day 1 locomotion0.80.91.2-1.00.8-0.8-1.1
Short access day 10 total locomotion0.40.50.7-0.20.8-0.8-0.8
Short access total locomotion0.20.20.6-0.8-0.40.5-0.0
Compulsive drug intake0.30.30.5-0.0-0.70.70.5
One hour access (0.3 mA shock)0.40.50.7-0.8-0.80.80.2
One hour access (shock baseline)0.80.91.9-1.4-0.91.00.1
Number of responses in last shaping day1.91.93.4-1.80.9-0.9-1.6
Context. condit. distance diff. score2.93.65.41.12.3-2.3-1.6
Locomotion velocity, session 11.41.53.9-2.0-0.91.0-0.2
Locomotion distance, session 11.01.34.5-2.1-0.30.4-0.6
Locomotion velocity, session 22.22.65.6-2.4-1.51.6-0.0
Locomotion distance, session 20.81.22.3-1.5-1.01.10.3
Locomotion velocity, session 30.30.31.0-1.0-0.00.0-0.6
Locomotion distance, session 30.30.40.9-1.0-0.40.5-0.2
Stereotopy head waving bouts, day 30.10.10.5-0.7-0.20.2-0.2
Stereotopy head waving duration, day 30.81.01.4-0.81.0-1.0-1.2
Locomotion velocity, session 70.70.81.10.4-1.01.01.0
Locomotion distance, session 70.70.91.10.5-1.01.01.1
Stereotopy head waving bouts, day 72.52.84.7-1.61.5-1.4-2.2
Stereotopy head waving duration, day 72.12.64.1-1.31.5-1.5-2.0
Locomotion velocity, session 81.61.92.8-0.61.7-1.6-1.4
Locomotion distance, session 80.50.81.20.21.1-1.1-0.9
Degree of sensitization distance1.61.62.41.3-1.11.11.5
Degree of sensitization stereotypy2.52.74.3-1.11.7-1.6-2.1
Condit. Reinf. active minus inactive responses1.31.52.2-0.0-1.51.51.2
Condit. Reinf. active-inactive response ratio1.51.72.20.7-1.41.41.5
Condit. Reinf. active responses0.60.81.2-0.4-1.11.10.8
Condit. Reinf. inactive responses0.20.20.5-0.70.3-0.3-0.5
Incentive salience index mean1.31.62.5-0.4-1.61.61.1
Condit. Reinf. lever presses0.40.61.1-1.0-0.80.80.1
Time in familiar zone, hab. session 10.10.10.2-0.4-0.10.1-0.2
Time in novel zone, hab. session 11.21.21.90.91.3-1.4-0.5
Total zone transitions, hab. session 10.50.60.8-0.70.9-0.8-0.8
Total locomotion distance, hab. session 11.52.23.70.11.9-1.9-1.2
Locomotion velocity, hab. session 11.42.03.2-0.11.8-1.8-1.2
Time in familiar zone, hab. session 20.10.10.30.5-0.20.20.5
Time in novel zone, hab. session 20.80.81.20.31.1-1.1-0.8
Total zone transitions, hab. session 20.30.41.4-1.2-0.00.1-0.3
Total locomotion distance, hab. session 20.30.40.6-0.80.5-0.5-0.6
Locomotion velocity, hab. session 20.20.30.9-0.90.3-0.2-0.5
Novel to familiar place preference ratio5.55.89.21.13.0-3.0-2.0
Novelty place preference7.07.211.51.23.3-3.4-2.2
Time in novel zone, NPP test7.57.912.51.53.5-3.5-2.1
Total zone transitions, NPP test1.21.74.5-2.1-1.01.1-0.1
Total locomotion distance, NPP test0.50.72.3-1.5-0.50.6-0.0
Locomotion velocity, NPP test0.71.02.6-1.6-0.80.90.1
Pavlov. Cond. lever latency1.31.63.21.81.2-1.30.2
Pavlov. Cond. magazine entry latency0.20.20.5-0.70.3-0.3-0.5
Pavlov. Cond. change in total contacts0.70.82.5-1.6-0.40.5-0.4
Pavlov. Cond. index score1.41.85.8-2.4-0.30.4-1.1
Pavlov. Cond. latency score1.41.75.1-2.3-0.70.8-0.8
Pavlov. Cond. lever contacts1.21.43.0-1.7-1.11.2-0.1
Pavlov. Cond. magazine entry number1.82.25.32.3-0.70.61.7
Pavlov. Cond. intertrial magazine entries0.60.71.30.8-0.70.71.2
Pavlov. Cond. lever-magazine prob. diff.1.31.65.0-2.2-0.10.2-1.2
Pavlov. Cond. response bias1.51.84.5-2.10.5-0.4-1.5
Bone: apparent density2.03.35.50.72.3-2.4-1.4
Bone surface0.20.30.90.90.3-0.30.4
Bone volume0.30.61.61.30.4-0.50.5
Bone: connectivity density1.42.33.2-0.31.8-1.8-1.6
Bone: cortical apparent density0.10.10.40.60.1-0.10.4
Bone: cortical area0.81.23.21.8-0.20.21.3
Bone: cortical porosity0.00.00.20.40.1-0.1-0.1
Bone: cortical porosity0.20.20.70.90.1-0.10.2
Bone: cortical thickness0.50.92.81.70.2-0.30.8
Bone: cortical thickness0.70.82.5-1.6-0.20.3-0.8
Bone: cortical tissue density0.10.10.30.50.1-0.10.3
Bone: elastic displacement0.60.71.61.2-0.20.21.0
Bone: elastic work2.43.15.52.0-1.21.12.3
Bone: endosteal estimation0.51.21.90.5-1.11.11.4
Bone: endosteal perimeter0.40.81.3-0.2-1.11.10.9
Bone: final force0.40.71.10.7-0.80.71.0
Bone: final moment0.40.61.00.8-0.60.61.0
Bone: marrow area0.40.81.40.4-1.00.91.2
Bone: maximum diameter0.10.20.50.6-0.20.20.7
Bone: maximum force0.91.62.61.2-1.11.01.6
Bone: maximum moment0.91.62.81.3-1.00.91.7
Bone: minimum diameter1.83.35.71.8-1.51.42.4
Bone: periosteal estimation0.71.52.71.3-0.90.81.6
Bone: periosteal perimeter0.60.91.61.1-0.70.71.3
Bone: post-yield work1.21.62.5-1.0-1.51.60.7
Bone: stiffness0.40.60.90.9-0.60.60.9
Bone: tissue strength4.54.310.33.2-0.80.72.4
Bone: trabecular number5.28.111.6-0.53.4-3.4-3.0
Bone: trabecular spacing4.15.26.80.8-2.62.62.6
Bone: trabecular thickness0.20.30.40.30.6-0.7-0.4
Bone: trabecular tissue density0.60.91.40.5-1.00.91.2
Breakpoint value in progressive ratio session2.52.83.7-0.71.9-1.9-1.8
Distance traveled before self-admin1.21.22.00.31.4-1.4-0.9
Distance traveled after self-admin0.20.20.30.00.6-0.5-0.3
Delta time in closed arm before/after self-admin0.40.41.21.10.4-0.4-0.0
Delta time in open arm before/after self-admin0.40.41.0-1.0-0.50.6-0.0
Diff in mean of infusions in LGA sessions0.20.20.30.30.5-0.6-0.3
Extinction: sum of active levers before priming1.41.42.41.5-0.70.71.4
Active lever presses in extinction session 60.10.10.10.40.2-0.20.2
Delta distance traveled before/after self-admin0.60.60.9-0.3-1.01.00.6
Delta ambulatory time before/after self-admin0.20.20.4-0.2-0.60.60.4
Time in closed arm before self-admin0.20.30.70.80.4-0.4-0.1
Time in closed arm after self-admin1.11.14.12.00.1-0.10.5
Time in open arm before self-admin1.01.11.5-0.51.2-1.2-1.2
Time in open arm after self-admin1.01.13.1-1.80.3-0.3-1.0
Sum of active levers in priming session hrs 5-61.91.82.5-0.0-1.61.61.5
Time to tail flick, vehicle, before self-admin0.90.91.40.2-1.21.20.9
Time to tail flick, vehicle, after self-admin1.51.62.4-0.1-1.51.51.3
Time to tail flick, test, before self-admin1.51.52.31.51.3-1.3-0.6
Time to tail flick, test, after self-admin2.62.63.80.31.9-1.9-1.7
Delta time to tail flick, vehicle, before/after SA0.70.70.9-0.3-0.91.01.0
Delta time to tail flick, test, before/after SA2.62.33.4-1.51.4-1.3-1.8
Ambulatory time before self-admin0.80.81.20.91.1-1.1-0.5
Ambulatory time after self-admin0.10.10.30.50.4-0.4-0.1
Total heroin consumption3.94.77.20.22.7-2.7-2.1
Area under the delay curve1.31.41.7-0.71.3-1.3-1.3
Delay disc. indifference point, 0s delay0.40.51.5-1.2-0.40.50.1
Delay disc. indifference point, 16s delay1.11.11.80.31.3-1.3-1.0
Delay disc. indifference point, 2s delay0.50.60.9-0.30.9-0.9-0.8
Delay disc. indifference point, 24s delay1.11.01.31.11.1-1.2-0.6
Delay disc. indifference point, 4s delay0.80.81.6-1.30.7-0.7-0.9
Delay disc. indifference point, 8s delay0.70.71.4-1.20.6-0.6-0.8
Delay discount exponential model param1.51.62.00.7-1.41.41.4
Delay discount hyperbolic model param1.11.21.50.7-1.21.21.2
Fecal boli incidents, locomotor time 11.11.21.8-0.2-1.41.31.1
Change in fecal boli incidents, locomotor task0.50.40.60.00.8-0.8-0.8
Time >=10cm from walls, locomotor time 10.10.10.10.4-0.20.20.1
Bouts of movement, locomotor time 10.20.30.80.9-0.20.20.4
Total resting periods, locomotor time 10.20.20.40.6-0.30.30.4
Rest time, locomotor task time 11.01.12.3-1.5-1.01.00.3
Distance moved, locomotor task time 11.01.11.5-0.41.2-1.1-1.2
Vertical activity count, locomotor time 10.80.91.30.11.1-1.1-1.0
Time >=10cm from walls, locomotor time 20.60.61.8-1.3-0.50.5-0.2
Bouts of movement, locomotor time 20.10.10.1-0.30.3-0.3-0.3
Total resting periods, locomotor time 20.00.10.1-0.30.2-0.2-0.2
Rest time, locomotor task time 20.00.00.0-0.20.1-0.1-0.1
Distance moved, locomotor task time 20.40.41.2-1.10.2-0.1-0.7
Vertical activity count, locomotor time 20.80.92.5-1.6-0.60.7-0.2
Weight adjusted by age2.02.23.11.0-1.61.51.8
Seeking ratio, delayed vs. immediate footshock0.60.70.90.90.9-1.0-0.7
Locomotion in novel chamber1.11.34.8-2.2-0.30.4-0.5
Locomotion in novel chamber post-restriction0.30.30.90.90.4-0.4-0.1
Progressive ratio0.10.10.1-0.3-0.30.30.1
Food seeking constrained by brief footshock0.40.51.61.30.5-0.50.1
Seeking ratio, punishment vs. effort0.60.71.41.20.9-0.9-0.1
Run reversals in cocaine runway, females0.10.10.30.50.3-0.30.2
Run reversals in cocaine runway, males0.20.20.3-0.2-0.50.60.4
Latency to leave start box in cocaine runway0.10.10.4-0.6-0.20.2-0.2
Latency to leave start box in cocaine runway, F0.30.41.1-1.1-0.20.2-0.4
Latency to leave start box in cocaine runway, M0.20.20.70.8-0.00.00.3
Cd content in liver0.91.01.7-0.1-1.31.30.7
Co content in liver0.80.92.7-1.7-0.50.5-0.7
Cu content in liver0.30.40.50.3-0.70.70.7
Fe content in liver0.70.91.41.0-0.80.81.2
K content in liver0.70.71.51.20.8-0.90.2
Mg content in liver0.80.82.61.60.3-0.40.6
Mn content in liver0.80.93.01.70.1-0.20.8
Na content in liver1.51.62.1-0.51.5-1.4-1.4
Rb content in liver0.60.71.91.40.7-0.70.2
Se content in liver0.50.61.1-0.3-1.01.00.5
Sr content in liver1.11.02.1-1.40.5-0.4-1.2
Zn content in liver0.50.61.21.0-0.30.21.1