Pigo

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain mRNA stability ENSRNOG00000009930 0.08 0.06 7.3e-06 0.05 0.03 0.06 0.05 1.1e-05 7.3e-04 4.0e-06 1.9e-05
2 Liver gene expression ENSRNOG00000009930 0.1 0.06 6.7e-12 0.09 0.1 0.1 0.1 2.8e-10 1.8e-11 1.1e-11 1.6e-11
3 PL mRNA stability ENSRNOG00000009930 0.08 0.05 9.6e-06 0.08 0.07 0.07 0.08 1.1e-06 5.7e-06 2.8e-06 1.1e-06

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail2.16.98.52.62.92.3
BMI without tail5.611.612.73.33.63.3
Body weight3.213.414.93.63.93.5
Epididymis fat weight0.51.11.31.01.21.0
Glucose0.91.41.71.21.31.1
Heart weight0.50.70.80.80.90.7
Left kidney weight0.41.21.51.20.91.2
Right kidney weight0.00.00.10.2-0.00.2
Tail length2.67.98.72.72.83.0
Length with tail0.72.52.91.51.61.7
Length without tail0.51.11.2-1.0-1.1-1.1
Liver weight, left0.71.21.31.11.01.1
Liver weight, right0.00.00.00.1-0.20.1
Parametrial fat weight0.10.20.30.50.50.5
Retroperitoneal fat weight0.10.30.4-0.7-0.4-0.6
Intraocular pressure2.23.13.51.81.61.9
Extensor digitorum longus weight5.321.422.64.54.84.7
Soleus weight0.10.20.3-0.6-0.4-0.5
Tibialis anterior weight7.826.727.35.15.25.2
Tibia length0.00.00.1-0.3-0.00.1
Number of licking bursts7.08.38.52.92.92.8
Food consumed during 24 hour testing period1.11.31.31.21.11.1
Times rat made contact with spout0.70.80.80.90.90.9
Mean time between licks in bursts0.40.50.7-0.7-0.5-0.8
Mean num. licks in bursts3.13.83.9-1.9-2.0-1.9
Std. dev. time between licks in bursts0.30.40.4-0.6-0.5-0.6
Water consumed over 24 hours1.41.61.71.31.31.3
Indifference point 0 sec0.00.10.2-0.10.40.1
Indifference point AUC6.47.57.92.72.72.8
Indifference point function ln k2.13.03.5-1.8-1.5-1.9
Indifference point function log k2.13.03.5-1.8-1.5-1.9
Delay discounting total patch changes 0 sec0.20.40.70.40.80.5
Delay discounting total patch changes 12 sec1.82.42.81.51.71.5
Delay discounting total patch changes 18 sec0.30.50.70.50.80.7
Delay discounting total patch changes 24 sec1.62.02.21.41.31.5
Delay discounting total patch changes 6 sec1.52.32.61.41.61.5
Delay discounting time to switch 0 sec1.72.62.8-1.6-1.7-1.7
Delay discounting water rate 0 sec0.91.41.41.11.21.2
Delay discounting water rate 12 sec0.00.00.1-0.0-0.30.0
Delay discounting water rate 18 sec0.40.50.60.80.60.7
Delay discounting water rate 24 sec0.00.00.10.00.3-0.1
Delay discounting water rate 6 sec1.31.92.11.41.21.4
Locomotor activity0.00.00.00.10.10.2
Locomotor testing distance0.00.00.0-0.1-0.2-0.1
Locomotor testing rearing1.32.12.21.31.51.5
Light reinforcement 10.91.61.81.21.21.4
Light reinforcement 20.10.10.20.30.30.5
Reaction time number correct0.00.00.0-0.0-0.0-0.0
Reaction time mean minus median0.70.92.00.81.40.5
Reaction time mean minus median AUC1.51.93.11.21.71.1
Reaction time num false alarms0.10.10.10.30.20.3
Reaction time num false alarms AUC0.40.60.80.80.70.9
Reaction time trials correct on left0.00.00.0-0.0-0.0-0.0
Reaction time trials on left0.00.00.0-0.2-0.1-0.2
Reaction time mean0.60.91.5-1.0-0.3-1.2
Reaction time mean AUC0.71.01.7-1.0-0.4-1.3
Median of all reaction times1.92.53.4-1.7-1.2-1.8
Reaction time omissions1.41.92.3-1.5-1.0-1.5
Reaction time false alarm rate0.00.00.10.20.10.2
Reaction time premature initiation rate2.12.93.5-1.8-1.3-1.9
Reaction time premature initiations1.62.32.8-1.7-1.2-1.7
Std. dev. reaction times0.10.20.4-0.00.6-0.3
Reaction time trials completed0.00.00.0-0.2-0.1-0.2
Reaction time trials AUC0.00.00.0-0.2-0.1-0.2
Social response proportion2.22.43.0-1.6-1.3-1.7
Social responses0.60.81.10.81.10.8
Social time0.10.10.2-0.3-0.0-0.5
Conditioned locomotion0.00.00.1-0.1-0.30.0
Cocaine response after cond. corrected2.32.63.1-1.6-1.8-1.5
Cocaine response after cond. not corrected2.02.22.8-1.4-1.7-1.3
Cocaine response before conditioning1.01.21.41.11.01.2
Saline control response1.11.41.61.21.11.3
Condit. Reinf. active minus inactive responses0.60.80.80.90.90.8
Condit. Reinf. active-inactive response ratio0.00.00.00.10.10.0
Condit. Reinf. active responses2.73.74.01.92.01.9
Condit. Reinf. inactive responses4.96.16.42.42.52.5
Condit. Reinf. lever presses2.63.63.81.92.01.9
Condit. Reinf. lever reinforcers received3.04.24.52.02.12.0
Pavlov. Cond. lever latency3.14.24.3-2.1-2.1-2.0
Pavlov. Cond. magazine entry latency0.20.20.2-0.4-0.4-0.5
Pavlov. Cond. change in total contacts0.91.21.91.01.40.8
Pavlov. Cond. index score0.30.40.50.60.70.5
Pavlov. Cond. latency score0.50.60.70.80.80.7
Pavlov. Cond. lever contacts1.42.02.01.41.41.4
Pavlov. Cond. magazine entry number0.10.10.2-0.4-0.5-0.2
Pavlov. Cond. intertrial magazine entries0.30.40.50.60.60.7
Pavlov. Cond. lever-magazine prob. diff.0.30.30.50.60.70.5
Pavlov. Cond. response bias0.70.91.01.01.00.9
Conditioned reinforcement - actives1.11.11.61.10.71.3
Conditioned reinforcement - inactives0.50.61.10.80.21.1
Conditioned locomotion0.50.70.80.80.80.9
Intermittent access intake day 1-15 change1.21.21.51.11.21.0
Intermittent access intake escalation1.51.51.91.21.41.0
Intermittent access intake escalation 22.52.52.61.61.61.5
Intermitt. access day 1 inactive lever presses0.60.70.80.80.90.8
Intermitt. access day 15 inactive lever presses0.10.10.20.20.20.4
Intermitt. access escalation Index0.80.70.80.80.90.9
Intermittent access day 1 total infusions0.60.71.0-0.8-1.0-0.6
Intermittent access day 15 total infusions0.50.60.70.80.70.8
Intermittent access terminal intake (last 3 days)1.41.62.21.21.01.5
Intermittent access total infusions0.90.91.21.00.81.1
Intermittent access day 1 locomotion1.91.92.2-1.4-1.5-1.3
Intermittent access day 15 total locomotion0.91.01.0-1.0-1.0-1.0
Intermittent access total locomotion0.40.50.6-0.7-0.8-0.6
Intermittent access standard deviation0.90.91.01.01.00.9
Cocaine induced anxiety0.50.60.9-0.7-1.0-0.7
Post-drug Anxiety0.70.80.90.90.70.9
Baseline Anxiety0.91.01.40.91.20.8
Lifetime Intake1.11.21.81.10.71.3
Incentive Sensitization - Responses0.30.30.70.50.20.8
Incentive Sensitization - Breakpoint0.20.20.40.30.00.7
Progressive ratio test 1 active lever presses0.70.71.21.00.21.1
Progressive ratio test 1 breakpoint0.90.91.51.10.41.2
Progressive ratio test 1 inactive lever presses0.80.81.60.90.31.3
Progressive ratio test 2 active lever presses0.20.20.50.4-0.10.7
Progressive ratio test 2 breakpoint0.10.10.20.1-0.40.4
Progressive ratio test 2 inactive lever presses0.60.71.10.80.71.0
Total sessions with >9 infusions0.20.20.40.3-0.20.6
Short access day 1 total inactive lever presses3.23.64.11.91.72.0
Short access day 10 total inactive lever presses0.50.50.60.70.80.7
Short access day 1 total infusions2.52.73.91.71.12.0
Short access day 10 total infusions0.30.30.60.50.40.8
Short access total infusions0.70.81.40.90.31.2
Short access day 1 locomotion0.20.30.3-0.5-0.5-0.5
Short access day 10 total locomotion0.70.70.8-0.8-0.9-0.9
Short access total locomotion0.00.00.00.0-0.10.1
Compulsive drug intake0.00.00.10.20.30.1
One hour access (0.3 mA shock)0.40.40.80.60.30.9
One hour access (shock baseline)0.20.30.50.50.30.7
Number of responses in last shaping day0.10.10.20.30.10.4
Context. condit. distance diff. score0.10.10.1-0.3-0.3-0.3
Locomotion velocity, session 10.00.00.00.1-0.10.2
Locomotion distance, session 10.10.10.10.20.40.2
Locomotion velocity, session 22.32.72.91.71.71.5
Locomotion distance, session 21.92.73.01.61.71.5
Locomotion velocity, session 30.00.00.00.00.00.1
Locomotion distance, session 32.02.12.61.41.61.3
Stereotopy head waving bouts, day 30.10.10.3-0.3-0.60.1
Stereotopy head waving duration, day 30.20.30.6-0.5-0.8-0.1
Locomotion velocity, session 70.10.10.1-0.3-0.3-0.2
Locomotion distance, session 70.10.20.20.40.50.4
Stereotopy head waving bouts, day 72.73.03.91.81.42.0
Stereotopy head waving duration, day 70.91.11.51.10.71.2
Locomotion velocity, session 80.00.00.00.10.10.2
Locomotion distance, session 80.10.10.20.30.40.3
Degree of sensitization distance1.01.11.3-1.0-1.1-0.9
Degree of sensitization stereotypy1.61.72.01.41.01.4
Condit. Reinf. active minus inactive responses0.50.60.70.80.70.9
Condit. Reinf. active-inactive response ratio0.60.60.7-0.8-0.8-0.8
Condit. Reinf. active responses3.13.84.02.01.92.0
Condit. Reinf. inactive responses3.84.55.02.12.22.0
Incentive salience index mean4.65.55.92.42.22.4
Condit. Reinf. lever presses10.414.014.63.83.63.8
Time in familiar zone, hab. session 10.10.10.2-0.2-0.1-0.4
Time in novel zone, hab. session 12.22.12.4-1.5-1.5-1.3
Total zone transitions, hab. session 10.00.00.1-0.10.1-0.3
Total locomotion distance, hab. session 10.30.40.70.60.90.4
Locomotion velocity, hab. session 11.52.12.81.51.71.2
Time in familiar zone, hab. session 20.50.50.7-0.7-0.5-0.9
Time in novel zone, hab. session 21.31.31.7-1.2-1.3-0.9
Total zone transitions, hab. session 20.30.40.50.60.70.6
Total locomotion distance, hab. session 20.70.91.10.91.00.9
Locomotion velocity, hab. session 20.91.21.41.11.21.0
Novel to familiar place preference ratio4.14.35.0-2.1-2.2-1.9
Novelty place preference5.65.86.6-2.4-2.6-2.3
Time in novel zone, NPP test6.66.97.8-2.6-2.8-2.5
Total zone transitions, NPP test0.40.60.80.70.90.6
Total locomotion distance, NPP test1.21.72.01.31.41.2
Locomotion velocity, NPP test1.72.52.71.61.61.4
Pavlov. Cond. lever latency8.410.711.6-3.3-3.1-3.4
Pavlov. Cond. magazine entry latency0.30.40.70.60.80.6
Pavlov. Cond. change in total contacts2.83.03.31.71.61.8
Pavlov. Cond. index score3.54.44.62.12.12.1
Pavlov. Cond. latency score3.24.14.32.02.02.1
Pavlov. Cond. lever contacts5.86.87.42.62.52.7
Pavlov. Cond. magazine entry number0.70.91.2-0.9-1.1-0.9
Pavlov. Cond. intertrial magazine entries0.30.40.40.60.60.6
Pavlov. Cond. lever-magazine prob. diff.3.13.94.02.02.02.0
Pavlov. Cond. response bias3.24.04.22.02.02.0
Bone: apparent density1.32.13.11.31.71.3
Bone surface0.61.11.50.91.21.0
Bone volume0.71.31.81.01.41.0
Bone: connectivity density0.50.81.20.81.10.7
Bone: cortical apparent density0.00.00.00.10.1-0.0
Bone: cortical area2.53.84.31.92.11.9
Bone: cortical porosity0.50.50.6-0.7-0.8-0.7
Bone: cortical porosity0.00.00.0-0.0-0.10.0
Bone: cortical thickness0.81.41.61.21.31.1
Bone: cortical thickness0.10.10.1-0.3-0.2-0.3
Bone: cortical tissue density0.00.00.0-0.0-0.0-0.1
Bone: elastic displacement5.56.27.1-2.5-2.3-2.7
Bone: elastic work1.51.92.4-1.4-1.1-1.5
Bone: endosteal estimation1.02.22.31.41.51.5
Bone: endosteal perimeter0.91.81.91.31.41.3
Bone: final force1.42.22.51.41.61.5
Bone: final moment1.01.72.01.21.41.3
Bone: marrow area1.12.42.61.51.61.6
Bone: maximum diameter2.54.65.32.12.32.0
Bone: maximum force3.35.76.02.32.42.4
Bone: maximum moment2.54.44.92.02.22.0
Bone: minimum diameter0.00.10.1-0.3-0.2-0.3
Bone: periosteal estimation1.73.53.81.82.01.8
Bone: periosteal perimeter0.50.80.90.81.00.8
Bone: post-yield work1.31.81.81.31.31.3
Bone: stiffness4.57.17.22.72.62.7
Bone: tissue strength0.20.20.30.30.50.3
Bone: trabecular number1.32.02.91.31.71.2
Bone: trabecular spacing0.00.00.10.3-0.00.2
Bone: trabecular thickness0.20.20.3-0.5-0.2-0.5
Bone: trabecular tissue density3.55.05.72.41.92.4
Breakpoint value in progressive ratio session1.21.31.6-1.3-1.0-1.1
Distance traveled before self-admin6.46.88.42.62.32.9
Distance traveled after self-admin2.73.03.41.81.61.8
Delta time in closed arm before/after self-admin1.71.71.91.31.41.2
Delta time in open arm before/after self-admin0.20.20.3-0.4-0.6-0.3
Diff in mean of infusions in LGA sessions0.10.10.2-0.4-0.3-0.4
Extinction: sum of active levers before priming1.31.31.4-1.2-1.1-1.2
Active lever presses in extinction session 61.81.72.0-1.4-1.1-1.4
Delta distance traveled before/after self-admin0.10.10.1-0.2-0.1-0.3
Delta ambulatory time before/after self-admin0.50.50.8-0.7-0.5-0.9
Time in closed arm before self-admin3.03.43.5-1.9-1.8-1.9
Time in closed arm after self-admin0.20.30.3-0.6-0.3-0.6
Time in open arm before self-admin2.32.42.61.41.61.6
Time in open arm after self-admin1.31.41.71.21.01.3
Sum of active levers in priming session hrs 5-64.94.85.1-2.3-2.1-2.2
Time to tail flick, vehicle, before self-admin2.82.93.1-1.6-1.7-1.8
Time to tail flick, vehicle, after self-admin0.00.00.00.1-0.10.1
Time to tail flick, test, before self-admin0.50.50.70.70.50.8
Time to tail flick, test, after self-admin0.40.41.00.41.00.3
Delta time to tail flick, vehicle, before/after SA0.80.80.80.80.90.9
Delta time to tail flick, test, before/after SA0.30.30.5-0.6-0.0-0.7
Ambulatory time before self-admin4.14.24.92.01.92.2
Ambulatory time after self-admin0.80.81.10.90.81.0
Total heroin consumption0.40.40.6-0.7-0.8-0.5
Area under the delay curve0.91.01.1-1.1-0.9-1.0
Delay disc. indifference point, 0s delay1.51.61.8-1.3-1.3-1.2
Delay disc. indifference point, 16s delay1.41.41.5-1.2-1.2-1.1
Delay disc. indifference point, 2s delay0.10.10.10.30.20.3
Delay disc. indifference point, 24s delay0.30.30.5-0.6-0.4-0.7
Delay disc. indifference point, 4s delay0.30.30.4-0.6-0.3-0.6
Delay disc. indifference point, 8s delay0.10.10.1-0.30.0-0.4
Delay discount exponential model param0.80.91.01.00.81.0
Delay discount hyperbolic model param0.70.70.90.90.70.9
Fecal boli incidents, locomotor time 11.71.82.3-1.4-1.1-1.5
Change in fecal boli incidents, locomotor task0.90.81.00.90.91.0
Time >=10cm from walls, locomotor time 10.00.00.0-0.2-0.10.0
Bouts of movement, locomotor time 11.41.51.7-1.2-1.3-1.2
Total resting periods, locomotor time 11.82.02.1-1.4-1.5-1.5
Rest time, locomotor task time 10.91.01.5-0.9-0.8-1.2
Distance moved, locomotor task time 11.71.82.41.31.21.6
Vertical activity count, locomotor time 10.80.91.31.00.61.1
Time >=10cm from walls, locomotor time 20.00.00.10.10.30.1
Bouts of movement, locomotor time 20.80.90.91.00.81.0
Total resting periods, locomotor time 20.30.40.40.60.50.7
Rest time, locomotor task time 20.70.80.9-1.0-0.9-0.9
Distance moved, locomotor task time 20.60.70.90.90.90.7
Vertical activity count, locomotor time 20.40.40.50.70.70.5
Weight adjusted by age0.00.00.1-0.3-0.1-0.1
Seeking ratio, delayed vs. immediate footshock3.94.54.72.12.22.0
Locomotion in novel chamber0.10.10.2-0.3-0.1-0.4
Locomotion in novel chamber post-restriction1.92.22.61.61.61.3
Progressive ratio0.10.10.1-0.3-0.3-0.3
Food seeking constrained by brief footshock8.710.612.53.42.83.5
Seeking ratio, punishment vs. effort3.13.84.62.01.62.1
Run reversals in cocaine runway, females0.00.00.1-0.10.0-0.2
Run reversals in cocaine runway, males0.00.00.0-0.2-0.2-0.1
Latency to leave start box in cocaine runway1.01.11.21.01.11.0
Latency to leave start box in cocaine runway, F0.00.00.0-0.2-0.1-0.2
Latency to leave start box in cocaine runway, M2.22.12.41.51.31.6
Cd content in liver1.51.61.71.31.31.2
Co content in liver1.11.31.7-1.1-1.3-1.0
Cu content in liver0.60.70.8-0.9-0.8-0.9
Fe content in liver0.00.00.00.0-0.20.2
K content in liver0.60.60.9-1.0-0.6-0.7
Mg content in liver1.51.52.0-1.4-1.0-1.3
Mn content in liver0.20.30.40.40.50.6
Na content in liver1.01.11.3-1.0-1.1-1.0
Rb content in liver4.86.06.2-2.5-2.5-2.3
Se content in liver2.53.13.31.71.71.8
Sr content in liver0.30.30.40.50.50.6
Zn content in liver0.00.00.00.00.20.1