Slco2a1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000009005 0.11 0.07 5.3e-06 0.04 0.03 0.03 0.03 2.4e-05 1.2e-04 1.8e-04 1.1e-04
2 Brain gene expression ENSRNOG00000009005 0.03 0.02 6.5e-03 0 0.01 0.01 0 2.0e-01 4.1e-02 8.5e-02 1.7e-01
3 Liver intron excision ratio chr8:103637317:103654517 0.09 0.05 2.6e-05 0.04 0.04 0.04 0.04 1.2e-05 5.0e-05 3.6e-05 1.9e-05
4 Liver intron excision ratio chr8:103641675:103654517 0.08 0.05 8.9e-04 0.03 0.02 0.02 0.02 7.2e-04 1.3e-03 2.9e-03 1.5e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail0.92.93.5-1.4-1.6-1.91.9
BMI without tail3.98.19.2-2.6-2.7-3.03.0
Body weight3.414.416.3-3.6-3.5-4.04.0
Epididymis fat weight0.20.40.6-0.3-0.8-0.70.7
Glucose4.56.97.8-2.7-2.1-2.82.8
Heart weight0.50.81.1-0.6-1.0-0.90.9
Left kidney weight0.41.22.8-0.5-1.7-1.01.0
Right kidney weight0.30.81.1-0.6-1.1-1.01.0
Tail length3.611.011.7-3.4-3.1-3.43.4
Length with tail3.011.012.1-3.5-3.1-3.43.4
Length without tail0.51.21.5-1.2-1.0-1.01.0
Liver weight, left0.00.10.10.30.20.2-0.2
Liver weight, right0.40.71.0-0.7-0.7-1.01.0
Parametrial fat weight1.93.74.1-2.0-1.8-1.91.9
Retroperitoneal fat weight0.72.43.4-1.7-0.4-1.81.8
Intraocular pressure0.10.20.70.3-0.80.1-0.1
Extensor digitorum longus weight0.20.91.4-1.00.0-1.21.2
Soleus weight8.424.626.8-5.1-4.4-5.25.2
Tibialis anterior weight0.00.00.1-0.10.30.0-0.0
Tibia length0.20.62.2-0.2-1.5-0.30.3
Number of licking bursts0.10.20.3-0.2-0.6-0.40.4
Food consumed during 24 hour testing period0.81.01.5-0.8-1.2-0.90.9
Times rat made contact with spout0.00.00.0-0.1-0.2-0.00.0
Mean time between licks in bursts0.50.61.10.71.00.7-0.7
Mean num. licks in bursts0.00.00.0-0.10.10.2-0.2
Std. dev. time between licks in bursts3.54.26.71.82.61.8-1.8
Water consumed over 24 hours0.10.10.10.3-0.20.4-0.4
Indifference point 0 sec0.10.20.4-0.3-0.6-0.30.3
Indifference point AUC0.40.41.30.61.10.1-0.1
Indifference point function ln k0.10.20.20.1-0.50.5-0.5
Indifference point function log k0.10.20.20.1-0.50.5-0.5
Delay discounting total patch changes 0 sec0.00.00.00.1-0.2-0.00.0
Delay discounting total patch changes 12 sec0.20.30.70.60.80.2-0.2
Delay discounting total patch changes 18 sec0.50.60.7-0.7-0.7-0.80.8
Delay discounting total patch changes 24 sec0.00.00.0-0.00.2-0.20.2
Delay discounting total patch changes 6 sec0.10.20.40.70.20.4-0.4
Delay discounting time to switch 0 sec0.10.20.5-0.3-0.7-0.30.3
Delay discounting water rate 0 sec0.20.40.6-0.60.2-0.80.8
Delay discounting water rate 12 sec1.92.83.7-1.4-1.3-1.91.9
Delay discounting water rate 18 sec1.62.22.7-1.3-1.3-1.61.6
Delay discounting water rate 24 sec1.01.41.8-1.4-1.1-1.11.1
Delay discounting water rate 6 sec1.52.22.9-1.4-0.9-1.71.7
Locomotor activity1.22.02.3-1.3-1.3-1.51.5
Locomotor testing distance1.72.83.2-1.6-1.8-1.71.7
Locomotor testing rearing0.20.30.60.60.80.3-0.3
Light reinforcement 11.32.44.3-2.1-0.7-1.51.5
Light reinforcement 22.93.85.2-2.3-1.7-1.91.9
Reaction time number correct0.40.50.6-0.7-0.5-0.80.8
Reaction time mean minus median0.20.20.50.70.6-0.10.1
Reaction time mean minus median AUC0.20.30.50.10.4-0.70.7
Reaction time num false alarms0.60.81.20.71.10.9-0.9
Reaction time num false alarms AUC0.20.30.50.30.70.6-0.6
Reaction time trials correct on left0.40.50.6-0.7-0.5-0.80.8
Reaction time trials on left0.40.50.7-0.7-0.5-0.80.8
Reaction time mean0.71.01.81.41.00.7-0.7
Reaction time mean AUC0.81.12.01.40.90.8-0.8
Median of all reaction times0.81.11.91.40.91.0-1.0
Reaction time omissions0.30.51.20.51.10.4-0.4
Reaction time false alarm rate0.30.50.60.50.80.7-0.7
Reaction time premature initiation rate3.74.97.2-2.7-1.0-2.42.4
Reaction time premature initiations3.54.96.9-2.6-1.0-2.42.4
Std. dev. reaction times0.60.81.61.31.00.5-0.5
Reaction time trials completed0.40.50.7-0.7-0.5-0.80.8
Reaction time trials AUC0.40.60.8-0.8-0.6-0.90.9
Social response proportion0.20.20.40.40.60.3-0.3
Social responses0.20.30.4-0.60.6-0.50.5
Social time3.44.45.42.32.31.9-1.9
Conditioned locomotion0.10.20.20.40.00.5-0.5
Cocaine response after cond. corrected0.20.30.4-0.40.3-0.60.6
Cocaine response after cond. not corrected0.40.50.7-0.60.0-0.90.9
Cocaine response before conditioning0.30.30.7-0.6-0.8-0.40.4
Saline control response1.41.92.8-1.2-1.7-1.31.3
Condit. Reinf. active minus inactive responses1.82.24.41.52.11.0-1.0
Condit. Reinf. active-inactive response ratio0.30.30.5-0.20.7-0.60.6
Condit. Reinf. active responses2.63.66.71.82.61.5-1.5
Condit. Reinf. inactive responses4.96.16.62.42.42.6-2.6
Condit. Reinf. lever presses1.62.24.21.32.11.2-1.2
Condit. Reinf. lever reinforcers received2.83.97.31.82.71.6-1.6
Pavlov. Cond. lever latency2.43.36.2-1.7-2.5-1.51.5
Pavlov. Cond. magazine entry latency2.73.13.91.62.01.7-1.7
Pavlov. Cond. change in total contacts1.92.75.61.32.41.3-1.3
Pavlov. Cond. index score2.93.85.91.82.41.8-1.8
Pavlov. Cond. latency score3.24.05.51.82.41.9-1.9
Pavlov. Cond. lever contacts2.23.15.21.72.31.5-1.5
Pavlov. Cond. magazine entry number5.16.38.2-2.3-2.9-2.42.4
Pavlov. Cond. intertrial magazine entries0.81.01.51.01.20.9-0.9
Pavlov. Cond. lever-magazine prob. diff.3.24.16.61.82.61.8-1.8
Pavlov. Cond. response bias3.54.98.72.03.01.8-1.8
Conditioned reinforcement - actives3.13.14.2-2.0-1.7-1.71.7
Conditioned reinforcement - inactives1.51.72.0-1.1-1.3-1.41.4
Conditioned locomotion0.30.40.8-0.8-0.9-0.30.3
Intermittent access intake day 1-15 change1.91.92.8-1.3-0.5-1.71.7
Intermittent access intake escalation2.62.63.6-1.5-0.9-1.91.9
Intermittent access intake escalation 20.70.71.0-0.8-0.3-1.01.0
Intermitt. access day 1 inactive lever presses0.40.40.60.30.50.8-0.8
Intermitt. access day 15 inactive lever presses1.11.22.10.50.71.5-1.5
Intermitt. access escalation Index0.30.20.80.9-0.1-0.30.3
Intermittent access day 1 total infusions1.01.22.2-1.5-1.2-0.70.7
Intermittent access day 15 total infusions3.13.44.2-2.1-1.4-2.02.0
Intermittent access terminal intake (last 3 days)5.45.97.8-2.8-2.0-2.42.4
Intermittent access total infusions3.53.95.0-2.2-1.9-1.91.9
Intermittent access day 1 locomotion0.30.30.7-0.9-0.4-0.30.3
Intermittent access day 15 total locomotion3.84.15.0-2.2-2.0-1.91.9
Intermittent access total locomotion2.22.53.9-2.0-1.5-1.31.3
Intermittent access standard deviation0.30.40.7-0.80.80.3-0.3
Cocaine induced anxiety0.10.10.1-0.3-0.4-0.20.2
Post-drug Anxiety0.10.10.2-0.5-0.3-0.20.2
Baseline Anxiety0.00.00.0-0.2-0.1-0.20.2
Lifetime Intake3.03.34.2-2.1-1.7-1.81.8
Incentive Sensitization - Responses2.32.33.4-1.9-1.5-1.31.3
Incentive Sensitization - Breakpoint2.02.03.1-1.7-1.4-1.21.2
Progressive ratio test 1 active lever presses1.31.31.7-1.1-1.3-1.11.1
Progressive ratio test 1 breakpoint1.51.51.7-1.2-1.3-1.21.2
Progressive ratio test 1 inactive lever presses0.20.20.3-0.6-0.6-0.20.2
Progressive ratio test 2 active lever presses4.04.35.0-2.2-2.1-2.02.0
Progressive ratio test 2 breakpoint3.13.43.9-2.0-1.7-1.81.8
Progressive ratio test 2 inactive lever presses0.60.71.6-1.3-0.7-0.60.6
Total sessions with >9 infusions0.10.10.2-0.5-0.3-0.30.3
Short access day 1 total inactive lever presses0.10.10.10.1-0.40.2-0.2
Short access day 10 total inactive lever presses1.11.21.21.01.11.1-1.1
Short access day 1 total infusions0.20.20.4-0.5-0.6-0.30.3
Short access day 10 total infusions2.83.14.5-2.1-1.6-1.61.6
Short access total infusions1.41.51.6-1.2-1.2-1.31.3
Short access day 1 locomotion1.92.02.1-1.3-1.4-1.51.5
Short access day 10 total locomotion0.20.20.3-0.40.50.5-0.5
Short access total locomotion1.11.11.3-1.1-1.0-1.11.1
Compulsive drug intake2.92.93.41.31.71.9-1.9
One hour access (0.3 mA shock)2.63.04.0-2.0-1.2-1.81.8
One hour access (shock baseline)6.67.68.0-2.8-2.5-2.82.8
Number of responses in last shaping day0.10.10.10.30.30.4-0.4
Context. condit. distance diff. score4.55.46.5-2.5-2.5-2.12.1
Locomotion velocity, session 10.10.10.3-0.2-0.5-0.20.2
Locomotion distance, session 10.20.20.9-0.1-1.0-0.10.1
Locomotion velocity, session 20.10.10.1-0.40.3-0.30.3
Locomotion distance, session 20.00.00.1-0.0-0.1-0.30.3
Locomotion velocity, session 30.10.10.4-0.1-0.60.0-0.0
Locomotion distance, session 30.40.50.80.9-0.00.7-0.7
Stereotopy head waving bouts, day 30.20.20.50.20.70.3-0.3
Stereotopy head waving duration, day 30.00.00.1-0.10.3-0.00.0
Locomotion velocity, session 70.30.30.8-0.5-0.9-0.40.4
Locomotion distance, session 70.00.00.00.00.10.0-0.0
Stereotopy head waving bouts, day 70.20.20.20.5-0.40.4-0.4
Stereotopy head waving duration, day 70.10.10.30.1-0.50.1-0.1
Locomotion velocity, session 82.53.04.9-1.8-2.2-1.41.4
Locomotion distance, session 83.55.27.4-2.2-2.7-2.02.0
Degree of sensitization distance0.40.40.9-0.9-0.1-0.70.7
Degree of sensitization stereotypy0.30.31.10.0-1.1-0.10.1
Condit. Reinf. active minus inactive responses0.30.30.5-0.7-0.1-0.60.6
Condit. Reinf. active-inactive response ratio1.81.92.5-1.4-1.6-1.31.3
Condit. Reinf. active responses0.10.10.5-0.20.7-0.20.2
Condit. Reinf. inactive responses0.60.71.80.71.40.5-0.5
Incentive salience index mean0.10.10.30.00.60.1-0.1
Condit. Reinf. lever presses0.40.61.20.61.10.6-0.6
Time in familiar zone, hab. session 13.33.14.11.91.02.0-2.0
Time in novel zone, hab. session 16.66.47.8-2.5-1.9-2.82.8
Total zone transitions, hab. session 10.50.70.9-0.9-0.3-1.01.0
Total locomotion distance, hab. session 10.30.40.60.40.80.7-0.7
Locomotion velocity, hab. session 10.30.50.70.60.80.7-0.7
Time in familiar zone, hab. session 21.11.21.40.91.21.1-1.1
Time in novel zone, hab. session 22.52.54.0-1.3-2.0-1.41.4
Total zone transitions, hab. session 20.10.10.3-0.00.50.2-0.2
Total locomotion distance, hab. session 21.72.22.71.21.61.5-1.5
Locomotion velocity, hab. session 22.43.33.51.61.91.9-1.9
Novel to familiar place preference ratio0.30.31.1-0.1-1.0-0.30.3
Novelty place preference0.60.61.8-0.3-1.3-0.50.5
Time in novel zone, NPP test0.60.71.7-0.4-1.3-0.60.6
Total zone transitions, NPP test0.10.10.1-0.30.3-0.20.2
Total locomotion distance, NPP test0.40.61.50.51.20.6-0.6
Locomotion velocity, NPP test0.50.81.60.71.20.7-0.7
Pavlov. Cond. lever latency2.22.83.1-1.6-1.5-1.81.8
Pavlov. Cond. magazine entry latency1.92.42.91.70.91.7-1.7
Pavlov. Cond. change in total contacts2.52.72.71.71.61.7-1.7
Pavlov. Cond. index score2.73.54.11.91.42.0-2.0
Pavlov. Cond. latency score2.02.53.01.71.11.7-1.7
Pavlov. Cond. lever contacts1.31.51.81.30.91.4-1.4
Pavlov. Cond. magazine entry number3.44.35.0-2.2-1.6-2.22.2
Pavlov. Cond. intertrial magazine entries0.00.00.10.0-0.00.2-0.2
Pavlov. Cond. lever-magazine prob. diff.3.44.34.82.11.72.2-2.2
Pavlov. Cond. response bias2.12.62.91.61.31.7-1.7
Bone: apparent density0.20.30.9-0.3-1.0-0.30.3
Bone surface0.50.81.11.1-0.01.0-1.0
Bone volume0.10.20.20.4-0.40.4-0.4
Bone: connectivity density0.10.10.2-0.2-0.5-0.20.2
Bone: cortical apparent density0.91.21.61.30.61.2-1.2
Bone: cortical area0.91.33.3-0.7-1.8-0.90.9
Bone: cortical porosity0.40.40.60.6-0.40.7-0.7
Bone: cortical porosity0.40.40.60.7-0.40.8-0.8
Bone: cortical thickness0.91.42.3-0.9-1.5-1.11.1
Bone: cortical thickness0.10.10.3-0.1-0.6-0.30.3
Bone: cortical tissue density1.01.21.71.30.61.2-1.2
Bone: elastic displacement2.02.32.3-1.5-1.5-1.51.5
Bone: elastic work3.54.67.4-1.9-2.7-1.91.9
Bone: endosteal estimation0.20.41.50.0-1.20.0-0.0
Bone: endosteal perimeter0.10.10.20.4-0.30.4-0.4
Bone: final force0.40.71.3-0.6-1.1-0.80.8
Bone: final moment0.61.02.0-0.7-1.4-0.90.9
Bone: marrow area0.20.41.60.0-1.3-0.00.0
Bone: maximum diameter0.20.41.5-0.2-1.2-0.40.4
Bone: maximum force0.81.43.8-0.7-1.9-0.80.8
Bone: maximum moment1.01.84.8-0.9-2.2-0.90.9
Bone: minimum diameter0.30.51.9-0.1-1.4-0.20.2
Bone: periosteal estimation0.81.54.8-0.6-2.2-0.70.7
Bone: periosteal perimeter0.10.20.70.2-0.80.1-0.1
Bone: post-yield work0.10.10.3-0.6-0.1-0.30.3
Bone: stiffness0.10.20.40.6-0.20.5-0.5
Bone: tissue strength7.16.97.8-2.8-2.1-2.72.7
Bone: trabecular number0.00.00.00.1-0.20.1-0.1
Bone: trabecular spacing0.20.31.00.01.00.1-0.1
Bone: trabecular thickness2.02.45.0-1.2-2.2-1.31.3
Bone: trabecular tissue density0.30.40.9-0.4-0.9-0.40.4
Breakpoint value in progressive ratio session0.50.61.10.61.00.7-0.7
Distance traveled before self-admin2.72.93.0-1.6-1.7-1.71.7
Distance traveled after self-admin0.50.61.2-1.1-0.7-0.60.6
Delta time in closed arm before/after self-admin0.60.61.9-0.4-1.4-0.40.4
Delta time in open arm before/after self-admin0.30.31.11.10.30.0-0.0
Diff in mean of infusions in LGA sessions0.10.10.40.70.30.0-0.0
Extinction: sum of active levers before priming0.00.00.10.4-0.2-0.10.1
Active lever presses in extinction session 60.60.60.9-0.4-0.5-1.01.0
Delta distance traveled before/after self-admin0.00.00.0-0.0-0.10.0-0.0
Delta ambulatory time before/after self-admin0.10.10.1-0.3-0.3-0.20.2
Time in closed arm before self-admin0.20.30.70.40.80.4-0.4
Time in closed arm after self-admin0.10.10.2-0.3-0.3-0.40.4
Time in open arm before self-admin0.30.30.5-0.7-0.6-0.30.3
Time in open arm after self-admin0.60.62.01.40.30.5-0.5
Sum of active levers in priming session hrs 5-60.10.10.2-0.4-0.2-0.30.3
Time to tail flick, vehicle, before self-admin0.20.20.4-0.60.2-0.50.5
Time to tail flick, vehicle, after self-admin0.80.80.80.90.90.9-0.9
Time to tail flick, test, before self-admin1.01.01.3-1.0-1.1-0.90.9
Time to tail flick, test, after self-admin1.11.12.5-1.0-1.6-0.70.7
Delta time to tail flick, vehicle, before/after SA1.81.82.81.70.51.4-1.4
Delta time to tail flick, test, before/after SA0.30.30.9-0.1-0.9-0.30.3
Ambulatory time before self-admin3.84.04.4-2.0-1.7-2.12.1
Ambulatory time after self-admin1.11.22.0-1.4-0.9-1.01.0
Total heroin consumption0.30.30.7-0.7-0.8-0.20.2
Area under the delay curve1.41.52.3-1.0-0.7-1.51.5
Delay disc. indifference point, 0s delay0.20.20.4-0.4-0.3-0.60.6
Delay disc. indifference point, 16s delay1.41.41.7-1.2-0.9-1.31.3
Delay disc. indifference point, 2s delay1.11.21.8-0.8-0.8-1.31.3
Delay disc. indifference point, 24s delay0.70.70.9-0.90.0-0.90.9
Delay disc. indifference point, 4s delay0.80.91.4-0.7-0.4-1.21.2
Delay disc. indifference point, 8s delay0.70.71.2-0.6-0.5-1.11.1
Delay discount exponential model param1.81.92.81.10.81.7-1.7
Delay discount hyperbolic model param1.61.72.61.00.71.6-1.6
Fecal boli incidents, locomotor time 10.20.20.2-0.50.4-0.40.4
Change in fecal boli incidents, locomotor task0.20.20.8-0.1-0.90.1-0.1
Time >=10cm from walls, locomotor time 11.11.11.61.31.00.9-0.9
Bouts of movement, locomotor time 10.20.20.30.50.40.5-0.5
Total resting periods, locomotor time 10.40.40.50.70.50.6-0.6
Rest time, locomotor task time 10.30.30.30.40.60.6-0.6
Distance moved, locomotor task time 11.01.01.3-0.9-1.1-1.01.0
Vertical activity count, locomotor time 10.00.00.00.10.20.1-0.1
Time >=10cm from walls, locomotor time 20.20.20.70.30.80.2-0.2
Bouts of movement, locomotor time 20.40.41.10.31.00.5-0.5
Total resting periods, locomotor time 20.40.51.10.31.00.6-0.6
Rest time, locomotor task time 20.20.20.30.20.50.4-0.4
Distance moved, locomotor task time 20.40.41.2-0.3-1.1-0.50.5
Vertical activity count, locomotor time 22.02.22.71.70.91.6-1.6
Weight adjusted by age0.40.51.4-1.2-0.5-0.30.3
Seeking ratio, delayed vs. immediate footshock0.70.81.20.9-0.01.1-1.1
Locomotion in novel chamber2.22.74.51.32.11.5-1.5
Locomotion in novel chamber post-restriction0.30.30.6-0.7-0.0-0.60.6
Progressive ratio3.44.05.01.52.22.1-2.1
Food seeking constrained by brief footshock1.21.42.2-1.3-1.5-1.01.0
Seeking ratio, punishment vs. effort4.15.06.8-1.9-2.6-2.22.2
Run reversals in cocaine runway, females2.02.02.51.41.61.3-1.3
Run reversals in cocaine runway, males2.22.12.3-1.4-1.4-1.51.5
Latency to leave start box in cocaine runway7.98.710.13.02.33.2-3.2
Latency to leave start box in cocaine runway, F3.43.84.12.01.72.0-2.0
Latency to leave start box in cocaine runway, M3.63.44.51.71.42.1-2.1
Cd content in liver3.84.14.6-2.1-1.8-2.12.1
Co content in liver0.10.10.1-0.3-0.4-0.40.4
Cu content in liver0.50.62.10.2-1.4-0.20.2
Fe content in liver1.11.31.7-1.1-1.3-1.11.1
K content in liver0.40.41.30.21.1-0.30.3
Mg content in liver0.30.30.80.40.9-0.20.2
Mn content in liver0.10.10.20.50.40.2-0.2
Na content in liver0.00.00.1-0.1-0.2-0.20.2
Rb content in liver0.91.22.0-0.9-0.1-1.41.4
Se content in liver0.10.10.2-0.4-0.3-0.10.1
Sr content in liver0.10.10.1-0.30.0-0.30.3
Zn content in liver0.40.50.8-0.50.2-0.90.9