Snx11

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000008642 0.06 0.06 4.2e-05 0.05 0.04 0.04 0.04 5.8e-06 9.1e-05 4.3e-05 8.1e-06
2 Liver intron excision ratio chr10:81749679:81752622 0.02 0.03 8.8e-03 0.02 0.01 0.01 0.01 2.8e-03 2.8e-02 3.0e-02 2.0e-02
3 OFC isoform ratio ENSRNOT00000011474 0.25 0.2 9.8e-03 0.07 0.04 0.05 0.05 8.1e-03 5.3e-02 2.8e-02 2.2e-02
4 OFC isoform ratio ENSRNOT00000089146 0.15 0.12 6.8e-03 0.04 0.05 0.02 0.04 3.4e-02 3.0e-02 1.3e-01 3.6e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail11.136.044.2-6.26.64.3-6.6
BMI without tail0.91.92.8-1.71.60.3-1.5
Body weight0.62.44.8-1.41.6-2.2-0.7
Epididymis fat weight0.10.20.60.20.1-0.80.1
Glucose0.40.60.8-0.80.9-0.5-0.7
Heart weight1.11.62.8-1.51.70.0-1.2
Left kidney weight0.92.79.90.0-0.1-3.10.9
Right kidney weight0.41.22.7-0.91.1-1.6-0.4
Tail length13.440.550.65.5-5.9-7.16.8
Length with tail9.936.257.84.9-5.0-7.66.2
Length without tail0.81.74.70.9-0.5-2.21.0
Liver weight, left0.71.21.51.2-0.9-1.01.2
Liver weight, right1.93.16.41.5-0.9-2.51.7
Parametrial fat weight0.00.00.1-0.10.10.3-0.1
Retroperitoneal fat weight0.31.01.9-0.91.4-0.9-0.6
Intraocular pressure1.72.43.21.4-1.4-1.81.6
Extensor digitorum longus weight0.20.72.2-0.40.5-1.5-0.3
Soleus weight0.82.53.2-1.71.80.8-1.7
Tibialis anterior weight0.41.21.81.0-1.1-1.31.0
Tibia length0.30.70.9-0.90.9-0.8-0.7
Number of licking bursts0.10.10.20.2-0.40.30.2
Food consumed during 24 hour testing period1.31.62.11.3-1.4-0.91.3
Times rat made contact with spout0.10.10.10.1-0.40.40.1
Mean time between licks in bursts0.10.10.2-0.30.20.0-0.4
Mean num. licks in bursts0.00.00.10.2-0.2-0.20.2
Std. dev. time between licks in bursts1.11.31.5-1.21.21.0-1.1
Water consumed over 24 hours0.10.20.40.4-0.70.00.3
Indifference point 0 sec0.71.22.1-1.41.10.7-1.1
Indifference point AUC0.10.10.20.5-0.30.20.3
Indifference point function ln k0.00.10.20.1-0.2-0.40.1
Indifference point function log k0.00.10.20.1-0.2-0.40.1
Delay discounting total patch changes 0 sec0.71.22.1-1.41.10.4-1.0
Delay discounting total patch changes 12 sec0.30.40.9-0.50.31.0-0.5
Delay discounting total patch changes 18 sec1.62.12.5-1.41.41.6-1.5
Delay discounting total patch changes 24 sec1.62.02.9-1.71.61.0-1.3
Delay discounting total patch changes 6 sec0.81.31.5-1.10.91.2-1.2
Delay discounting time to switch 0 sec0.10.20.3-0.30.20.6-0.4
Delay discounting water rate 0 sec0.50.81.4-1.11.2-0.4-0.8
Delay discounting water rate 12 sec0.30.51.60.4-0.2-1.30.4
Delay discounting water rate 18 sec0.60.81.70.7-0.6-1.30.9
Delay discounting water rate 24 sec0.50.71.0-0.91.00.3-0.9
Delay discounting water rate 6 sec0.00.00.00.10.20.10.1
Locomotor activity0.91.52.5-1.01.01.6-1.1
Locomotor testing distance2.03.36.8-1.41.32.6-1.7
Locomotor testing rearing0.60.93.1-0.20.41.8-0.6
Light reinforcement 10.91.64.1-0.90.62.0-1.0
Light reinforcement 20.10.10.3-0.20.20.5-0.2
Reaction time number correct0.10.10.10.3-0.1-0.40.2
Reaction time mean minus median0.60.81.51.0-1.20.50.6
Reaction time mean minus median AUC0.81.01.91.1-1.40.80.6
Reaction time num false alarms0.20.20.40.4-0.60.20.5
Reaction time num false alarms AUC0.20.30.50.4-0.7-0.00.7
Reaction time trials correct on left0.10.10.10.3-0.1-0.40.2
Reaction time trials on left0.10.10.10.3-0.2-0.40.3
Reaction time mean0.30.51.60.2-0.51.3-0.2
Reaction time mean AUC0.30.41.30.2-0.61.2-0.2
Median of all reaction times0.60.82.5-0.30.11.6-0.6
Reaction time omissions0.10.20.40.3-0.60.30.2
Reaction time false alarm rate0.10.10.20.1-0.40.20.3
Reaction time premature initiation rate0.40.61.10.7-1.0-0.60.7
Reaction time premature initiations0.71.01.40.9-1.2-0.80.9
Std. dev. reaction times0.40.51.10.7-1.00.40.5
Reaction time trials completed0.10.10.10.3-0.2-0.40.3
Reaction time trials AUC0.10.10.10.3-0.2-0.30.3
Social response proportion1.31.42.40.8-0.9-1.51.3
Social responses0.10.10.1-0.1-0.3-0.30.3
Social time0.30.41.3-0.1-0.31.1-0.2
Conditioned locomotion0.70.91.1-1.01.10.3-1.1
Cocaine response after cond. corrected4.45.06.6-2.62.41.2-2.4
Cocaine response after cond. not corrected2.22.53.7-1.91.80.5-1.7
Cocaine response before conditioning2.12.63.21.7-1.6-1.21.8
Saline control response0.10.10.20.4-0.30.10.3
Condit. Reinf. active minus inactive responses0.20.20.3-0.50.40.6-0.4
Condit. Reinf. active-inactive response ratio0.70.81.5-0.80.61.2-0.8
Condit. Reinf. active responses0.00.10.2-0.10.10.4-0.1
Condit. Reinf. inactive responses0.10.10.30.5-0.40.10.4
Condit. Reinf. lever presses0.60.81.20.8-1.1-0.70.9
Condit. Reinf. lever reinforcers received0.00.00.10.1-0.20.30.1
Pavlov. Cond. lever latency0.60.81.01.0-0.9-0.71.0
Pavlov. Cond. magazine entry latency0.70.81.60.5-0.9-1.30.9
Pavlov. Cond. change in total contacts0.20.30.5-0.70.40.4-0.5
Pavlov. Cond. index score0.20.20.6-0.80.4-0.1-0.4
Pavlov. Cond. latency score0.10.10.3-0.50.2-0.4-0.2
Pavlov. Cond. lever contacts0.50.70.9-1.00.80.6-0.9
Pavlov. Cond. magazine entry number0.10.20.50.20.20.7-0.1
Pavlov. Cond. intertrial magazine entries1.41.83.11.8-1.3-0.71.4
Pavlov. Cond. lever-magazine prob. diff.0.20.30.7-0.90.5-0.2-0.5
Pavlov. Cond. response bias0.40.60.9-1.00.70.4-0.8
Conditioned reinforcement - actives1.41.42.2-1.11.01.5-1.1
Conditioned reinforcement - inactives0.20.20.40.6-0.20.60.4
Conditioned locomotion3.94.76.4-2.52.02.0-2.1
Intermittent access intake day 1-15 change2.32.34.0-1.62.00.8-1.4
Intermittent access intake escalation2.32.23.7-1.61.90.9-1.4
Intermittent access intake escalation 21.71.63.1-1.21.70.7-1.2
Intermitt. access day 1 inactive lever presses0.10.20.40.6-0.30.30.2
Intermitt. access day 15 inactive lever presses1.31.53.9-0.60.82.0-1.0
Intermitt. access escalation Index1.31.12.1-1.41.10.5-1.0
Intermittent access day 1 total infusions0.40.51.10.9-1.0-0.10.5
Intermittent access day 15 total infusions0.10.10.2-0.30.40.5-0.4
Intermittent access terminal intake (last 3 days)0.20.30.6-0.20.40.8-0.5
Intermittent access total infusions0.00.00.00.1-0.10.1-0.0
Intermittent access day 1 locomotion0.20.20.50.4-0.7-0.10.4
Intermittent access day 15 total locomotion0.30.30.4-0.60.60.6-0.5
Intermittent access total locomotion0.50.50.7-0.80.70.7-0.7
Intermittent access standard deviation2.02.14.2-1.42.00.7-1.2
Cocaine induced anxiety0.10.10.1-0.40.3-0.1-0.2
Post-drug Anxiety0.30.30.50.7-0.70.50.5
Baseline Anxiety0.60.62.40.3-0.11.6-0.3
Lifetime Intake0.00.00.10.3-0.30.00.1
Incentive Sensitization - Responses0.20.20.4-0.20.50.6-0.3
Incentive Sensitization - Breakpoint0.30.30.5-0.40.70.6-0.5
Progressive ratio test 1 active lever presses0.30.30.70.5-0.8-0.50.4
Progressive ratio test 1 breakpoint0.60.61.10.7-1.0-0.70.6
Progressive ratio test 1 inactive lever presses0.10.10.2-0.10.00.4-0.3
Progressive ratio test 2 active lever presses0.10.10.20.4-0.40.30.2
Progressive ratio test 2 breakpoint0.00.10.10.2-0.20.30.0
Progressive ratio test 2 inactive lever presses0.10.10.20.4-0.10.40.1
Total sessions with >9 infusions0.10.10.2-0.40.40.3-0.4
Short access day 1 total inactive lever presses2.02.23.71.9-1.7-0.21.6
Short access day 10 total inactive lever presses0.30.41.01.0-0.50.10.5
Short access day 1 total infusions0.10.10.10.3-0.20.40.1
Short access day 10 total infusions0.10.20.2-0.40.40.3-0.5
Short access total infusions0.00.00.0-0.0-0.0-0.1-0.1
Short access day 1 locomotion0.80.81.1-1.01.10.7-0.8
Short access day 10 total locomotion0.50.51.1-1.10.90.3-0.4
Short access total locomotion0.80.81.4-1.21.20.3-0.7
Compulsive drug intake7.07.09.02.9-3.0-1.82.7
One hour access (0.3 mA shock)0.40.50.80.9-0.9-0.10.7
One hour access (shock baseline)2.52.93.4-1.71.91.5-1.7
Number of responses in last shaping day0.10.10.2-0.10.00.5-0.5
Context. condit. distance diff. score0.10.20.3-0.40.40.2-0.5
Locomotion velocity, session 10.40.40.6-0.80.70.5-0.6
Locomotion distance, session 12.73.54.31.6-1.7-2.12.0
Locomotion velocity, session 21.41.73.20.9-1.0-1.81.3
Locomotion distance, session 23.14.55.41.9-1.9-2.32.3
Locomotion velocity, session 30.10.10.30.1-0.0-0.60.2
Locomotion distance, session 33.63.94.62.0-1.8-2.12.0
Stereotopy head waving bouts, day 34.45.25.7-2.42.42.0-2.4
Stereotopy head waving duration, day 33.03.64.5-2.12.11.4-2.0
Locomotion velocity, session 71.51.72.11.2-1.2-1.41.3
Locomotion distance, session 75.46.87.52.6-2.5-2.62.7
Stereotopy head waving bouts, day 70.91.01.6-0.90.91.3-0.9
Stereotopy head waving duration, day 70.50.61.2-0.70.61.1-0.7
Locomotion velocity, session 80.10.10.1-0.30.3-0.4-0.3
Locomotion distance, session 80.81.32.10.9-1.0-1.41.1
Degree of sensitization distance0.00.00.1-0.0-0.0-0.30.1
Degree of sensitization stereotypy0.30.31.10.2-0.21.0-0.0
Condit. Reinf. active minus inactive responses0.10.10.10.4-0.30.10.3
Condit. Reinf. active-inactive response ratio0.30.30.6-0.50.50.7-0.5
Condit. Reinf. active responses0.10.10.10.4-0.20.40.2
Condit. Reinf. inactive responses0.30.30.70.8-0.60.10.5
Incentive salience index mean0.20.20.30.5-0.60.10.6
Condit. Reinf. lever presses0.50.71.20.9-1.10.10.9
Time in familiar zone, hab. session 10.50.50.80.9-0.80.70.3
Time in novel zone, hab. session 12.72.63.5-1.91.81.0-1.7
Total zone transitions, hab. session 15.88.29.23.0-3.0-2.33.0
Total locomotion distance, hab. session 12.23.24.12.0-1.9-1.21.9
Locomotion velocity, hab. session 13.34.85.42.3-2.2-1.92.3
Time in familiar zone, hab. session 20.70.81.6-0.60.61.2-0.9
Time in novel zone, hab. session 20.20.20.50.2-0.2-0.70.4
Total zone transitions, hab. session 21.51.92.41.5-1.5-0.81.5
Total locomotion distance, hab. session 20.00.00.00.1-0.0-0.10.2
Locomotion velocity, hab. session 20.10.10.20.2-0.1-0.50.4
Novel to familiar place preference ratio1.51.62.81.1-1.0-1.71.1
Novelty place preference1.61.72.71.2-1.1-1.61.2
Time in novel zone, NPP test1.21.21.81.1-1.0-1.31.0
Total zone transitions, NPP test2.94.25.32.1-2.2-1.62.3
Total locomotion distance, NPP test0.60.91.11.0-0.9-0.71.1
Locomotion velocity, NPP test1.21.82.21.3-1.2-1.31.5
Pavlov. Cond. lever latency0.81.01.6-1.21.3-0.1-1.0
Pavlov. Cond. magazine entry latency0.20.31.10.0-0.11.0-0.1
Pavlov. Cond. change in total contacts1.61.72.61.6-1.60.21.3
Pavlov. Cond. index score0.40.50.80.6-0.80.90.5
Pavlov. Cond. latency score0.40.50.80.7-0.90.60.6
Pavlov. Cond. lever contacts1.21.42.31.3-1.50.11.2
Pavlov. Cond. magazine entry number0.50.72.3-0.50.5-1.5-0.1
Pavlov. Cond. intertrial magazine entries0.60.81.01.0-0.7-1.00.8
Pavlov. Cond. lever-magazine prob. diff.0.40.50.80.6-0.80.90.4
Pavlov. Cond. response bias0.50.61.10.8-0.81.10.4
Bone: apparent density1.42.33.1-1.41.81.3-1.6
Bone surface0.30.51.1-0.61.1-0.0-0.6
Bone volume0.91.62.8-1.31.70.6-1.3
Bone: connectivity density0.20.30.7-0.10.60.8-0.5
Bone: cortical apparent density4.86.310.43.0-3.2-0.42.4
Bone: cortical area0.10.10.2-0.20.4-0.3-0.1
Bone: cortical porosity0.40.50.5-0.70.70.6-0.7
Bone: cortical porosity0.30.30.4-0.60.70.3-0.5
Bone: cortical thickness0.20.30.50.5-0.5-0.70.5
Bone: cortical thickness1.31.51.91.1-1.1-1.31.4
Bone: cortical tissue density5.16.610.93.1-3.3-0.52.5
Bone: elastic displacement0.10.10.3-0.50.40.1-0.3
Bone: elastic work0.10.10.5-0.10.0-0.70.1
Bone: endosteal estimation0.20.51.1-0.71.0-0.6-0.4
Bone: endosteal perimeter0.40.71.7-0.91.3-0.1-0.7
Bone: final force0.20.30.5-0.50.70.2-0.5
Bone: final moment0.20.30.6-0.60.80.1-0.5
Bone: marrow area0.20.40.8-0.50.9-0.6-0.3
Bone: maximum diameter0.40.71.5-0.81.20.4-0.8
Bone: maximum force0.40.61.3-0.81.1-0.2-0.7
Bone: maximum moment0.40.71.3-0.91.1-0.4-0.7
Bone: minimum diameter0.10.20.8-0.20.4-0.90.1
Bone: periosteal estimation0.30.61.4-0.71.2-0.2-0.6
Bone: periosteal perimeter0.30.51.1-0.71.1-0.3-0.6
Bone: post-yield work0.10.10.2-0.20.5-0.4-0.3
Bone: stiffness0.00.10.2-0.00.4-0.3-0.1
Bone: tissue strength0.10.10.2-0.20.20.2-0.4
Bone: trabecular number1.01.52.6-0.81.21.6-1.2
Bone: trabecular spacing0.00.00.1-0.1-0.20.20.0
Bone: trabecular thickness1.01.22.1-1.21.40.0-1.2
Bone: trabecular tissue density0.10.10.10.2-0.4-0.30.3
Breakpoint value in progressive ratio session3.94.45.02.1-2.1-1.92.2
Distance traveled before self-admin0.60.60.90.7-0.6-0.90.9
Distance traveled after self-admin0.60.71.0-1.01.00.1-0.8
Delta time in closed arm before/after self-admin0.20.10.30.4-0.4-0.50.1
Delta time in open arm before/after self-admin0.10.10.10.3-0.40.30.2
Diff in mean of infusions in LGA sessions0.40.51.11.0-0.60.10.6
Extinction: sum of active levers before priming1.31.31.51.0-1.2-1.21.2
Active lever presses in extinction session 60.20.20.3-0.40.60.2-0.3
Delta distance traveled before/after self-admin1.81.92.7-1.41.31.1-1.7
Delta ambulatory time before/after self-admin2.12.33.1-1.61.51.1-1.8
Time in closed arm before self-admin1.31.51.9-1.31.41.0-1.2
Time in closed arm after self-admin0.50.50.8-0.80.90.1-0.9
Time in open arm before self-admin0.40.40.80.8-0.9-0.30.4
Time in open arm after self-admin0.50.51.00.9-1.00.40.4
Sum of active levers in priming session hrs 5-62.92.83.81.7-1.8-1.11.9
Time to tail flick, vehicle, before self-admin1.41.42.21.3-1.5-0.31.2
Time to tail flick, vehicle, after self-admin0.20.20.3-0.20.40.5-0.5
Time to tail flick, test, before self-admin0.10.10.2-0.50.20.1-0.2
Time to tail flick, test, after self-admin0.00.00.1-0.1-0.0-0.3-0.2
Delta time to tail flick, vehicle, before/after SA1.31.31.7-1.11.30.7-1.3
Delta time to tail flick, test, before/after SA0.40.40.60.6-0.5-0.80.6
Ambulatory time before self-admin0.40.40.50.5-0.5-0.70.7
Ambulatory time after self-admin0.90.91.6-1.31.1-0.2-0.9
Total heroin consumption1.21.52.41.6-1.5-0.21.1
Area under the delay curve0.50.61.30.6-0.3-1.10.7
Delay disc. indifference point, 0s delay0.80.91.21.1-0.9-0.71.0
Delay disc. indifference point, 16s delay0.20.20.4-0.50.6-0.4-0.3
Delay disc. indifference point, 2s delay0.40.41.00.4-0.2-1.00.6
Delay disc. indifference point, 24s delay0.60.60.90.7-0.6-1.00.8
Delay disc. indifference point, 4s delay4.64.87.52.0-1.7-2.72.2
Delay disc. indifference point, 8s delay0.20.20.20.4-0.3-0.50.4
Delay discount exponential model param0.80.82.0-0.60.41.4-0.8
Delay discount hyperbolic model param1.11.12.4-0.80.61.5-1.0
Fecal boli incidents, locomotor time 12.73.03.8-1.82.01.3-1.8
Change in fecal boli incidents, locomotor task2.62.43.21.6-1.8-1.31.5
Time >=10cm from walls, locomotor time 10.20.20.40.5-0.60.40.2
Bouts of movement, locomotor time 10.00.00.1-0.20.2-0.3-0.1
Total resting periods, locomotor time 10.10.10.2-0.30.4-0.5-0.3
Rest time, locomotor task time 10.20.20.4-0.40.6-0.3-0.3
Distance moved, locomotor task time 11.01.11.61.0-1.3-0.71.1
Vertical activity count, locomotor time 10.30.30.80.4-0.9-0.20.5
Time >=10cm from walls, locomotor time 20.50.50.90.8-0.9-0.20.7
Bouts of movement, locomotor time 20.10.10.3-0.30.40.5-0.4
Total resting periods, locomotor time 20.20.20.3-0.30.40.6-0.4
Rest time, locomotor task time 20.70.81.41.2-1.1-0.10.8
Distance moved, locomotor task time 20.70.82.40.1-0.5-1.60.6
Vertical activity count, locomotor time 20.40.41.5-0.4-0.1-1.20.2
Weight adjusted by age0.70.81.30.8-1.1-0.60.9
Seeking ratio, delayed vs. immediate footshock0.30.40.6-0.30.60.8-0.8
Locomotion in novel chamber0.60.71.01.0-1.0-0.60.7
Locomotion in novel chamber post-restriction2.02.33.3-1.31.31.8-1.7
Progressive ratio0.10.10.20.20.1-0.50.3
Food seeking constrained by brief footshock0.50.61.2-0.71.10.6-0.7
Seeking ratio, punishment vs. effort0.10.10.2-0.2-0.10.4-0.3
Run reversals in cocaine runway, females0.60.61.60.4-0.5-1.30.7
Run reversals in cocaine runway, males2.42.35.5-0.90.82.4-1.4
Latency to leave start box in cocaine runway2.32.54.0-1.52.00.8-1.7
Latency to leave start box in cocaine runway, F3.33.65.5-1.92.40.8-2.2
Latency to leave start box in cocaine runway, M0.60.61.0-0.71.00.5-0.7
Cd content in liver0.40.50.80.9-0.8-0.30.6
Co content in liver0.00.00.1-0.10.1-0.3-0.1
Cu content in liver1.62.03.01.7-1.5-0.61.6
Fe content in liver1.72.03.11.3-1.1-1.81.5
K content in liver0.10.10.3-0.40.50.0-0.2
Mg content in liver0.50.50.90.9-0.7-0.20.8
Mn content in liver1.61.82.61.5-1.60.01.5
Na content in liver1.11.21.6-1.11.01.3-0.9
Rb content in liver0.30.41.20.5-0.01.1-0.2
Se content in liver0.20.20.5-0.40.70.3-0.5
Sr content in liver2.32.12.41.1-1.6-1.61.5
Zn content in liver0.20.20.7-0.20.20.8-0.3