Capn3

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 BLA gene expression ENSRNOG00000008609 0.39 0.15 3.4e-05 0.05 0.07 0.08 0.04 9.4e-04 1.5e-04 3.1e-05 2.2e-03
2 Brain gene expression ENSRNOG00000008609 0.04 0.02 4.6e-04 0.01 0.03 0.02 0.01 2.4e-02 5.7e-04 7.0e-03 6.9e-02
3 NAcc gene expression ENSRNOG00000008609 0.25 0.14 3.0e-03 0.03 0.01 0.02 0.03 2.5e-03 3.2e-02 1.1e-02 4.0e-03
4 PL gene expression ENSRNOG00000008609 0.35 0.13 6.3e-08 0.09 0.08 0.09 0.07 4.0e-07 1.4e-06 2.4e-07 3.5e-06

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail3.611.720.00.24.53.73.6
BMI without tail3.98.113.91.13.73.22.6
Body weight2.912.426.1-0.35.13.73.1
Epididymis fat weight0.10.31.00.01.00.40.5
Glucose0.71.12.01.41.01.00.7
Heart weight2.33.38.9-0.83.01.80.7
Left kidney weight0.92.67.0-1.32.61.10.9
Right kidney weight1.85.210.6-2.53.21.31.5
Tail length0.20.50.80.80.90.9-0.0
Length with tail0.31.12.8-0.91.70.8-0.2
Length without tail0.51.02.4-1.61.20.30.4
Liver weight, left3.86.110.00.43.13.22.2
Liver weight, right1.01.73.3-0.91.81.40.9
Parametrial fat weight0.51.03.5-1.90.4-0.1-0.7
Retroperitoneal fat weight1.24.010.4-0.93.21.91.1
Intraocular pressure0.71.02.40.3-1.6-1.3-0.1
Extensor digitorum longus weight0.41.72.71.11.21.21.6
Soleus weight0.00.10.40.6-0.2-0.10.1
Tibialis anterior weight0.00.00.10.20.30.00.2
Tibia length0.72.05.9-2.40.7-0.7-1.0
Number of licking bursts1.11.43.11.80.20.81.3
Food consumed during 24 hour testing period0.20.30.50.70.20.70.4
Times rat made contact with spout0.10.20.3-0.10.50.30.5
Mean time between licks in bursts0.10.20.60.2-0.8-0.0-0.3
Mean num. licks in bursts0.80.92.4-1.50.2-0.5-1.0
Std. dev. time between licks in bursts1.11.42.2-0.41.51.21.3
Water consumed over 24 hours0.10.10.10.4-0.4-0.3-0.3
Indifference point 0 sec0.91.44.1-2.01.0-0.20.5
Indifference point AUC2.12.54.4-0.7-2.1-1.6-1.6
Indifference point function ln k4.05.78.11.32.92.62.5
Indifference point function log k4.05.78.11.32.92.62.5
Delay discounting total patch changes 0 sec0.61.02.9-1.70.9-0.20.6
Delay discounting total patch changes 12 sec1.92.53.4-1.8-1.1-1.6-1.6
Delay discounting total patch changes 18 sec1.62.02.6-1.1-1.5-1.6-1.5
Delay discounting total patch changes 24 sec1.01.33.5-1.91.10.50.5
Delay discounting total patch changes 6 sec0.81.21.9-1.3-0.9-1.4-0.7
Delay discounting time to switch 0 sec1.42.12.7-1.3-1.2-1.6-1.6
Delay discounting water rate 0 sec1.01.51.81.11.31.31.2
Delay discounting water rate 12 sec2.94.47.72.81.12.02.1
Delay discounting water rate 18 sec3.95.18.12.21.72.22.8
Delay discounting water rate 24 sec2.33.27.42.70.91.51.5
Delay discounting water rate 6 sec1.01.55.32.3-0.30.60.5
Locomotor activity0.20.30.5-0.7-0.6-0.6-0.4
Locomotor testing distance0.50.81.2-0.5-1.1-1.1-0.7
Locomotor testing rearing1.62.53.7-0.2-1.8-1.7-1.9
Light reinforcement 12.24.18.7-2.9-0.3-2.1-1.8
Light reinforcement 21.72.33.6-0.9-1.6-1.5-1.9
Reaction time number correct3.04.37.01.22.62.31.9
Reaction time mean minus median0.70.91.3-0.71.20.81.0
Reaction time mean minus median AUC1.21.53.3-0.51.81.11.2
Reaction time num false alarms0.60.91.7-0.5-0.5-1.0-1.3
Reaction time num false alarms AUC0.60.91.6-0.4-0.7-1.1-1.3
Reaction time trials correct on left3.04.37.01.22.62.31.9
Reaction time trials on left2.94.26.81.22.62.21.9
Reaction time mean0.30.40.8-0.0-0.9-0.8-0.1
Reaction time mean AUC0.10.10.20.0-0.5-0.40.3
Median of all reaction times1.01.43.00.1-1.7-1.4-0.7
Reaction time omissions0.50.61.3-1.10.0-0.9-0.6
Reaction time false alarm rate2.02.83.7-1.0-1.8-1.9-1.9
Reaction time premature initiation rate3.34.55.8-2.2-1.8-2.1-2.4
Reaction time premature initiations0.81.11.9-1.3-0.4-0.9-1.4
Std. dev. reaction times0.50.71.3-0.50.90.41.2
Reaction time trials completed2.94.26.81.22.62.21.9
Reaction time trials AUC2.63.76.21.22.52.11.7
Social response proportion2.02.24.9-0.9-0.7-1.7-2.2
Social responses3.14.15.9-0.7-2.0-2.4-2.4
Social time0.10.10.10.4-0.20.10.3
Conditioned locomotion1.21.43.30.01.81.30.7
Cocaine response after cond. corrected2.02.34.82.2-0.30.91.8
Cocaine response after cond. not corrected1.61.83.51.9-0.40.91.7
Cocaine response before conditioning0.81.01.4-1.2-0.6-0.9-1.2
Saline control response1.01.43.9-2.01.1-0.1-0.7
Condit. Reinf. active minus inactive responses0.60.71.6-1.30.6-0.1-1.0
Condit. Reinf. active-inactive response ratio0.30.30.5-0.70.50.0-0.7
Condit. Reinf. active responses0.70.92.3-1.50.7-0.1-1.0
Condit. Reinf. inactive responses0.50.62.2-1.50.4-0.3-0.4
Condit. Reinf. lever presses0.81.13.4-1.90.2-0.6-0.6
Condit. Reinf. lever reinforcers received1.11.63.9-2.00.4-0.5-1.4
Pavlov. Cond. lever latency0.70.91.81.3-1.30.10.3
Pavlov. Cond. magazine entry latency1.41.63.0-1.1-0.4-1.4-1.7
Pavlov. Cond. change in total contacts1.11.63.0-1.50.0-1.0-1.7
Pavlov. Cond. index score0.81.02.2-1.10.2-0.9-1.5
Pavlov. Cond. latency score0.70.92.0-0.90.2-0.9-1.4
Pavlov. Cond. lever contacts0.81.23.3-1.80.9-0.4-0.7
Pavlov. Cond. magazine entry number0.70.92.20.70.01.01.5
Pavlov. Cond. intertrial magazine entries1.62.03.80.91.11.51.9
Pavlov. Cond. lever-magazine prob. diff.0.81.02.3-1.00.2-0.9-1.5
Pavlov. Cond. response bias0.91.32.9-1.70.7-0.6-1.1
Conditioned reinforcement - actives0.70.70.9-1.0-0.3-0.9-1.0
Conditioned reinforcement - inactives0.81.03.61.90.10.1-0.5
Conditioned locomotion1.61.92.4-1.5-0.8-1.5-1.6
Intermittent access intake day 1-15 change3.33.27.42.70.81.81.3
Intermittent access intake escalation2.72.77.12.70.61.60.9
Intermittent access intake escalation 25.55.514.43.80.72.11.6
Intermitt. access day 1 inactive lever presses1.01.12.4-1.10.1-0.9-1.6
Intermitt. access day 15 inactive lever presses0.80.92.50.0-0.7-0.8-1.6
Intermitt. access escalation Index0.00.00.1-0.2-0.1-0.30.1
Intermittent access day 1 total infusions1.31.51.8-1.3-0.9-1.3-1.3
Intermittent access day 15 total infusions0.10.20.50.7-0.2-0.1-0.4
Intermittent access terminal intake (last 3 days)0.70.72.41.50.20.60.2
Intermittent access total infusions0.20.30.9-0.2-0.2-0.3-0.9
Intermittent access day 1 locomotion1.01.02.5-1.60.0-0.9-0.8
Intermittent access day 15 total locomotion0.20.20.60.30.40.2-0.7
Intermittent access total locomotion0.60.61.9-0.4-0.3-0.6-1.4
Intermittent access standard deviation1.11.22.91.70.61.20.3
Cocaine induced anxiety1.21.43.6-1.30.3-0.6-1.9
Post-drug Anxiety0.20.30.6-0.30.80.60.1
Baseline Anxiety1.51.63.51.10.71.01.9
Lifetime Intake0.20.20.3-0.5-0.4-0.4-0.6
Incentive Sensitization - Responses0.20.20.60.8-0.00.1-0.2
Incentive Sensitization - Breakpoint0.20.20.50.7-0.1-0.1-0.5
Progressive ratio test 1 active lever presses0.80.82.0-0.4-0.6-0.8-1.4
Progressive ratio test 1 breakpoint0.80.82.2-0.3-0.7-0.8-1.5
Progressive ratio test 1 inactive lever presses1.41.52.9-0.5-1.1-1.4-1.7
Progressive ratio test 2 active lever presses1.61.73.6-0.1-1.2-1.3-1.9
Progressive ratio test 2 breakpoint1.51.73.7-0.1-1.1-1.3-1.9
Progressive ratio test 2 inactive lever presses0.60.71.40.7-0.5-0.8-1.2
Total sessions with >9 infusions0.91.03.1-1.8-0.4-0.8-0.4
Short access day 1 total inactive lever presses0.20.20.4-0.30.60.10.6
Short access day 10 total inactive lever presses1.31.45.0-0.40.3-0.7-2.2
Short access day 1 total infusions0.40.40.7-0.6-0.9-0.7-0.3
Short access day 10 total infusions0.91.02.8-1.7-0.1-0.4-0.9
Short access total infusions0.30.31.0-1.0-0.3-0.20.1
Short access day 1 locomotion1.01.01.6-0.6-0.9-1.1-1.2
Short access day 10 total locomotion0.60.60.80.90.40.80.9
Short access total locomotion0.80.81.7-1.3-0.1-0.8-1.0
Compulsive drug intake0.80.82.21.50.20.50.9
One hour access (0.3 mA shock)2.02.38.42.9-0.30.4-0.8
One hour access (shock baseline)1.21.43.90.1-0.9-0.9-2.0
Number of responses in last shaping day0.80.91.8-1.1-0.6-1.30.1
Context. condit. distance diff. score0.91.12.01.01.41.1-0.1
Locomotion velocity, session 12.02.23.9-0.5-2.0-1.7-1.3
Locomotion distance, session 11.11.42.1-0.6-1.4-1.3-1.3
Locomotion velocity, session 20.81.01.70.31.10.91.3
Locomotion distance, session 20.20.20.40.1-0.6-0.4-0.7
Locomotion velocity, session 31.01.22.91.20.20.61.7
Locomotion distance, session 32.02.27.42.7-0.20.50.9
Stereotopy head waving bouts, day 31.11.42.8-0.81.70.91.1
Stereotopy head waving duration, day 32.83.45.6-1.12.41.62.0
Locomotion velocity, session 70.40.51.71.30.0-0.0-0.3
Locomotion distance, session 70.40.51.10.9-0.4-0.2-1.1
Stereotopy head waving bouts, day 70.10.10.3-0.50.0-0.20.3
Stereotopy head waving duration, day 70.10.20.3-0.3-0.2-0.40.6
Locomotion velocity, session 81.01.22.70.51.61.20.8
Locomotion distance, session 80.30.50.70.80.70.5-0.7
Degree of sensitization distance1.92.03.3-1.7-0.6-1.0-1.8
Degree of sensitization stereotypy0.40.40.70.1-0.9-0.9-0.4
Condit. Reinf. active minus inactive responses3.03.45.2-1.3-1.5-2.3-2.0
Condit. Reinf. active-inactive response ratio0.20.20.6-0.5-0.0-0.8-0.4
Condit. Reinf. active responses6.07.310.0-1.8-2.4-3.2-3.2
Condit. Reinf. inactive responses3.94.77.3-0.8-2.3-2.4-2.7
Incentive salience index mean5.36.48.8-1.9-2.2-3.0-2.8
Condit. Reinf. lever presses4.66.27.8-2.3-2.0-2.8-2.8
Time in familiar zone, hab. session 10.30.30.40.6-0.60.20.6
Time in novel zone, hab. session 10.20.20.6-0.40.8-0.1-0.4
Total zone transitions, hab. session 10.20.31.2-1.1-0.3-0.1-0.1
Total locomotion distance, hab. session 10.40.51.6-1.3-0.3-0.4-0.4
Locomotion velocity, hab. session 10.71.12.9-1.7-0.6-0.7-0.7
Time in familiar zone, hab. session 20.30.30.60.30.30.60.8
Time in novel zone, hab. session 20.10.10.2-0.10.2-0.3-0.4
Total zone transitions, hab. session 20.10.10.2-0.40.20.50.3
Total locomotion distance, hab. session 20.20.20.7-0.80.1-0.1-0.4
Locomotion velocity, hab. session 20.30.31.1-1.0-0.0-0.3-0.5
Novel to familiar place preference ratio0.50.61.6-1.20.8-0.1-0.1
Novelty place preference0.50.51.5-1.20.8-0.1-0.2
Time in novel zone, NPP test0.40.51.3-1.10.7-0.1-0.2
Total zone transitions, NPP test0.20.30.60.8-0.30.40.5
Total locomotion distance, NPP test0.00.00.10.10.10.20.1
Locomotion velocity, NPP test0.00.00.00.10.10.20.1
Pavlov. Cond. lever latency1.31.72.81.70.71.21.4
Pavlov. Cond. magazine entry latency3.84.97.2-2.7-0.7-2.2-2.7
Pavlov. Cond. change in total contacts1.01.12.7-0.8-0.3-1.0-1.7
Pavlov. Cond. index score2.43.04.3-2.1-1.0-1.8-1.9
Pavlov. Cond. latency score2.53.25.8-2.4-0.8-1.7-1.8
Pavlov. Cond. lever contacts1.61.92.9-1.7-0.8-1.3-1.5
Pavlov. Cond. magazine entry number2.43.04.22.00.61.82.1
Pavlov. Cond. intertrial magazine entries1.61.94.42.1-0.01.11.4
Pavlov. Cond. lever-magazine prob. diff.2.02.53.3-1.7-1.0-1.7-1.8
Pavlov. Cond. response bias2.32.84.8-1.4-1.1-1.8-2.2
Bone: apparent density1.22.02.70.51.61.61.6
Bone surface1.01.82.40.71.51.41.5
Bone volume1.42.33.31.11.51.51.8
Bone: connectivity density0.30.51.0-1.00.90.50.3
Bone: cortical apparent density0.60.71.50.7-1.2-0.8-0.5
Bone: cortical area1.32.03.20.51.81.41.7
Bone: cortical porosity0.30.30.60.8-0.20.40.5
Bone: cortical porosity0.30.30.50.50.30.60.7
Bone: cortical thickness0.91.42.40.41.51.21.3
Bone: cortical thickness2.83.35.61.80.81.92.4
Bone: cortical tissue density0.50.61.40.7-1.2-0.7-0.3
Bone: elastic displacement0.10.10.2-0.0-0.4-0.50.0
Bone: elastic work0.10.20.4-0.20.5-0.00.6
Bone: endosteal estimation0.20.50.90.90.40.80.6
Bone: endosteal perimeter0.00.10.30.50.00.20.3
Bone: final force0.20.30.60.80.70.2-0.1
Bone: final moment0.20.30.70.80.60.1-0.0
Bone: marrow area0.20.50.80.90.50.80.6
Bone: maximum diameter0.61.11.80.41.31.11.2
Bone: maximum force0.40.72.1-0.21.50.60.3
Bone: maximum moment0.30.51.6-0.11.30.50.3
Bone: minimum diameter1.22.23.7-0.21.81.41.9
Bone: periosteal estimation0.71.52.00.91.41.21.4
Bone: periosteal perimeter0.50.91.40.41.10.91.2
Bone: post-yield work0.10.10.2-0.50.10.2-0.4
Bone: stiffness0.30.51.5-0.41.20.5-0.2
Bone: tissue strength0.20.20.3-0.60.4-0.0-0.5
Bone: trabecular number1.72.64.00.82.01.91.4
Bone: trabecular spacing1.72.23.6-1.1-1.6-1.9-1.2
Bone: trabecular thickness0.60.71.41.2-0.10.70.9
Bone: trabecular tissue density0.91.33.71.9-1.10.2-0.4
Breakpoint value in progressive ratio session0.91.01.71.10.61.01.3
Distance traveled before self-admin0.20.20.3-0.50.50.40.0
Distance traveled after self-admin0.40.41.01.00.40.60.5
Delta time in closed arm before/after self-admin0.90.92.2-0.1-0.6-1.0-1.5
Delta time in open arm before/after self-admin3.43.34.92.01.62.21.1
Diff in mean of infusions in LGA sessions0.60.61.1-0.8-0.5-0.8-1.0
Extinction: sum of active levers before priming0.30.30.50.5-0.7-0.50.5
Active lever presses in extinction session 60.10.00.1-0.10.30.30.2
Delta distance traveled before/after self-admin0.10.10.40.6-0.4-0.2-0.1
Delta ambulatory time before/after self-admin0.60.71.0-0.5-0.8-1.0-1.0
Time in closed arm before self-admin0.91.02.4-0.6-1.5-1.1-0.3
Time in closed arm after self-admin2.83.04.9-0.9-1.8-2.2-1.7
Time in open arm before self-admin0.40.40.60.60.70.30.7
Time in open arm after self-admin6.06.69.33.02.42.91.8
Sum of active levers in priming session hrs 5-60.50.51.81.30.00.30.2
Time to tail flick, vehicle, before self-admin1.01.01.8-1.40.90.90.8
Time to tail flick, vehicle, after self-admin1.71.82.71.60.81.51.4
Time to tail flick, test, before self-admin0.50.51.6-1.20.4-0.1-0.5
Time to tail flick, test, after self-admin0.60.61.2-0.11.01.10.6
Delta time to tail flick, vehicle, before/after SA1.91.95.12.30.81.10.6
Delta time to tail flick, test, before/after SA0.60.51.10.40.40.81.0
Ambulatory time before self-admin0.20.20.5-0.70.40.20.2
Ambulatory time after self-admin0.30.30.40.6-0.5-0.5-0.4
Total heroin consumption0.10.10.30.40.20.20.5
Area under the delay curve2.83.07.10.21.61.42.7
Delay disc. indifference point, 0s delay0.50.51.4-1.2-0.3-0.80.2
Delay disc. indifference point, 16s delay1.91.95.31.10.70.92.3
Delay disc. indifference point, 2s delay0.10.10.3-0.20.6-0.10.0
Delay disc. indifference point, 24s delay0.40.40.8-0.4-0.9-0.80.0
Delay disc. indifference point, 4s delay0.80.91.9-0.31.00.81.4
Delay disc. indifference point, 8s delay5.75.913.00.42.42.13.6
Delay discount exponential model param2.12.25.4-0.2-1.4-1.3-2.3
Delay discount hyperbolic model param1.81.94.3-0.0-1.4-1.1-2.1
Fecal boli incidents, locomotor time 10.60.61.61.3-0.70.00.6
Change in fecal boli incidents, locomotor task1.31.23.2-0.21.81.20.3
Time >=10cm from walls, locomotor time 10.30.31.21.1-0.10.2-0.0
Bouts of movement, locomotor time 10.80.92.90.2-1.7-0.80.1
Total resting periods, locomotor time 11.21.33.7-0.1-1.9-1.1-0.4
Rest time, locomotor task time 10.10.10.2-0.4-0.1-0.0-0.1
Distance moved, locomotor task time 10.30.30.6-0.2-0.7-0.8-0.3
Vertical activity count, locomotor time 10.00.00.10.00.40.2-0.1
Time >=10cm from walls, locomotor time 24.04.210.7-1.53.31.80.8
Bouts of movement, locomotor time 20.70.71.9-0.20.60.81.4
Total resting periods, locomotor time 20.60.71.7-0.30.50.81.3
Rest time, locomotor task time 22.52.96.10.5-2.5-1.7-1.6
Distance moved, locomotor task time 20.60.71.4-1.11.20.3-0.0
Vertical activity count, locomotor time 21.61.74.6-0.52.11.30.7
Weight adjusted by age0.30.30.8-0.90.6-0.1-0.0
Seeking ratio, delayed vs. immediate footshock0.20.20.5-0.10.60.2-0.7
Locomotion in novel chamber0.30.40.70.00.80.50.8
Locomotion in novel chamber post-restriction2.32.74.1-0.12.02.01.7
Progressive ratio0.10.10.3-0.6-0.00.4-0.1
Food seeking constrained by brief footshock0.20.30.8-0.9-0.0-0.2-0.6
Seeking ratio, punishment vs. effort0.30.30.8-0.2-0.5-0.9-0.5
Run reversals in cocaine runway, females1.01.02.91.70.50.90.3
Run reversals in cocaine runway, males0.90.81.60.6-1.3-0.8-0.8
Latency to leave start box in cocaine runway0.40.50.8-0.9-0.2-0.4-0.9
Latency to leave start box in cocaine runway, F0.30.31.1-1.1-0.2-0.4-0.1
Latency to leave start box in cocaine runway, M0.90.93.1-0.3-0.3-0.5-1.8
Cd content in liver0.50.61.00.00.80.91.0
Co content in liver0.40.50.80.90.10.50.9
Cu content in liver0.81.03.01.7-0.20.70.4
Fe content in liver2.83.34.6-0.2-2.1-2.1-2.1
K content in liver1.21.21.90.41.01.41.4
Mg content in liver4.54.75.62.21.72.42.3
Mn content in liver0.30.40.8-0.20.90.60.5
Na content in liver1.21.32.2-0.7-1.3-0.9-1.5
Rb content in liver6.78.49.62.23.13.13.0
Se content in liver0.50.51.41.20.50.60.5
Sr content in liver0.30.31.0-1.0-0.1-0.00.0
Zn content in liver0.10.10.2-0.0-0.40.1-0.5