Sbf1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain isoform ratio ENSRNOT00000072955 0.02 0.02 6.3e-03 0.01 0.02 0.02 0.02 1.3e-02 5.8e-03 1.1e-02 4.4e-03
2 Brain isoform ratio ENSRNOT00000119425 0.02 0.02 6.2e-03 0.01 0.02 0 0.02 1.4e-02 4.8e-03 2.7e-01 4.1e-03
3 Brain mRNA stability ENSRNOG00000008392 0.03 0.02 3.0e-03 0.03 0.01 0.01 0.02 4.4e-04 2.0e-02 4.0e-02 8.7e-03
4 Liver gene expression ENSRNOG00000008392 0.06 0.03 1.2e-06 0.05 0.04 0.02 0.04 5.0e-06 5.9e-05 1.9e-03 1.7e-05

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail4.916.019.14.3-4.4-3.24.0
BMI without tail3.16.58.52.9-2.9-1.92.3
Body weight2.510.411.53.3-3.4-2.83.4
Epididymis fat weight0.92.23.61.7-1.9-0.11.5
Glucose0.40.60.7-0.90.80.4-0.8
Heart weight0.50.70.9-0.70.70.9-0.8
Left kidney weight4.613.315.43.9-3.9-3.03.7
Right kidney weight8.725.027.45.2-5.2-4.35.2
Tail length0.51.42.0-1.21.21.0-1.4
Length with tail0.00.10.3-0.50.50.1-0.2
Length without tail0.51.12.20.8-0.8-1.01.5
Liver weight, left0.10.10.2-0.40.4-0.3-0.3
Liver weight, right0.81.41.8-1.21.11.0-1.4
Parametrial fat weight0.20.30.90.4-0.3-1.00.3
Retroperitoneal fat weight1.34.35.32.2-2.3-1.72.0
Intraocular pressure0.20.30.70.2-0.20.7-0.8
Extensor digitorum longus weight0.31.41.61.2-1.2-1.01.3
Soleus weight1.02.93.11.7-1.7-1.71.7
Tibialis anterior weight0.00.00.10.2-0.20.20.2
Tibia length1.64.45.8-2.42.40.8-2.4
Number of licking bursts0.00.00.1-0.00.00.30.1
Food consumed during 24 hour testing period2.32.83.21.8-1.8-1.41.7
Times rat made contact with spout1.41.63.81.0-0.8-2.01.0
Mean time between licks in bursts2.43.43.7-1.91.91.9-1.6
Mean num. licks in bursts0.30.41.50.3-0.2-1.20.2
Std. dev. time between licks in bursts1.51.72.91.2-1.2-1.71.0
Water consumed over 24 hours0.91.02.30.8-0.8-1.50.7
Indifference point 0 sec0.40.70.80.9-0.9-0.70.8
Indifference point AUC0.20.20.3-0.50.30.5-0.5
Indifference point function ln k2.23.14.81.7-1.6-2.21.5
Indifference point function log k2.23.14.81.7-1.6-2.21.5
Delay discounting total patch changes 0 sec0.20.30.40.6-0.6-0.40.6
Delay discounting total patch changes 12 sec0.00.10.10.2-0.30.3-0.1
Delay discounting total patch changes 18 sec1.11.41.9-1.11.01.4-1.2
Delay discounting total patch changes 24 sec0.91.12.9-0.60.51.7-0.9
Delay discounting total patch changes 6 sec0.10.10.10.2-0.3-0.30.3
Delay discounting time to switch 0 sec0.50.81.4-0.70.81.2-0.7
Delay discounting water rate 0 sec1.11.73.51.1-1.0-1.91.0
Delay discounting water rate 12 sec2.02.94.21.6-1.6-2.01.5
Delay discounting water rate 18 sec4.35.67.62.2-2.1-2.82.4
Delay discounting water rate 24 sec1.82.44.21.4-1.3-2.11.3
Delay discounting water rate 6 sec0.91.32.81.0-0.9-1.70.7
Locomotor activity0.20.30.60.7-0.8-0.20.2
Locomotor testing distance0.50.91.3-0.80.80.9-1.1
Locomotor testing rearing0.10.20.3-0.40.30.3-0.5
Light reinforcement 10.40.71.21.1-1.1-0.40.7
Light reinforcement 22.83.74.72.1-2.2-1.61.8
Reaction time number correct0.60.81.2-1.11.10.1-1.0
Reaction time mean minus median0.10.10.10.3-0.30.20.3
Reaction time mean minus median AUC0.10.20.40.3-0.3-0.20.6
Reaction time num false alarms0.40.51.3-0.40.41.1-0.6
Reaction time num false alarms AUC0.10.20.5-0.30.30.7-0.4
Reaction time trials correct on left0.60.81.2-1.11.10.1-1.0
Reaction time trials on left0.60.91.3-1.11.10.2-1.0
Reaction time mean0.20.30.7-0.40.50.8-0.6
Reaction time mean AUC0.40.51.0-0.60.61.0-0.7
Median of all reaction times0.40.50.8-0.60.60.9-0.7
Reaction time omissions1.31.83.4-1.21.21.8-1.1
Reaction time false alarm rate0.10.20.70.1-0.10.8-0.1
Reaction time premature initiation rate2.33.04.52.0-2.1-1.31.5
Reaction time premature initiations0.71.01.41.1-1.2-1.10.7
Std. dev. reaction times0.00.00.10.0-0.10.20.1
Reaction time trials completed0.60.91.3-1.11.10.2-1.0
Reaction time trials AUC0.40.60.9-0.90.9-0.0-0.8
Social response proportion0.60.71.1-0.70.60.9-1.1
Social responses0.40.51.0-0.40.30.9-1.0
Social time0.20.20.30.5-0.4-0.50.5
Conditioned locomotion0.30.40.60.6-0.7-0.10.8
Cocaine response after cond. corrected1.71.92.31.5-1.5-1.01.5
Cocaine response after cond. not corrected4.14.65.32.3-2.3-1.72.2
Cocaine response before conditioning1.21.51.81.3-1.3-0.91.2
Saline control response1.31.82.21.4-1.5-1.11.3
Condit. Reinf. active minus inactive responses0.20.30.5-0.50.40.4-0.7
Condit. Reinf. active-inactive response ratio0.30.30.7-0.40.30.9-0.5
Condit. Reinf. active responses0.00.10.10.2-0.3-0.3-0.0
Condit. Reinf. inactive responses0.80.91.80.9-0.9-1.30.7
Condit. Reinf. lever presses0.81.11.61.2-1.3-0.71.0
Condit. Reinf. lever reinforcers received0.00.00.10.1-0.2-0.2-0.1
Pavlov. Cond. lever latency1.11.61.9-1.41.40.9-1.3
Pavlov. Cond. magazine entry latency0.30.30.50.6-0.7-0.20.7
Pavlov. Cond. change in total contacts0.00.00.00.1-0.2-0.20.1
Pavlov. Cond. index score0.81.11.31.1-1.1-0.91.0
Pavlov. Cond. latency score1.21.51.81.3-1.3-1.01.3
Pavlov. Cond. lever contacts1.21.72.01.4-1.4-1.01.4
Pavlov. Cond. magazine entry number0.50.60.8-0.80.80.5-0.9
Pavlov. Cond. intertrial magazine entries0.30.41.40.10.0-1.20.0
Pavlov. Cond. lever-magazine prob. diff.0.81.01.11.0-1.0-0.91.0
Pavlov. Cond. response bias0.40.60.80.9-0.9-0.40.8
Conditioned reinforcement - actives0.30.30.40.6-0.6-0.50.6
Conditioned reinforcement - inactives0.40.50.90.7-0.6-0.51.0
Conditioned locomotion3.34.04.22.0-2.0-2.01.9
Intermittent access intake day 1-15 change0.90.91.30.9-0.9-1.10.8
Intermittent access intake escalation1.21.21.61.1-1.1-1.30.9
Intermittent access intake escalation 22.72.72.91.6-1.7-1.71.6
Intermitt. access day 1 inactive lever presses1.81.92.71.3-1.4-1.61.2
Intermitt. access day 15 inactive lever presses4.75.25.92.3-2.3-2.42.1
Intermitt. access escalation Index0.90.81.7-0.70.81.3-0.7
Intermittent access day 1 total infusions0.10.10.10.2-0.2-0.20.3
Intermittent access day 15 total infusions0.30.30.50.5-0.5-0.70.5
Intermittent access terminal intake (last 3 days)2.83.13.31.7-1.7-1.81.7
Intermittent access total infusions0.30.40.40.6-0.6-0.60.7
Intermittent access day 1 locomotion0.10.10.10.3-0.3-0.40.2
Intermittent access day 15 total locomotion0.50.50.90.7-0.7-1.00.6
Intermittent access total locomotion0.80.91.50.9-0.8-1.20.8
Intermittent access standard deviation0.91.01.50.9-0.8-1.21.0
Cocaine induced anxiety3.84.45.02.2-2.2-1.82.1
Post-drug Anxiety3.63.94.52.1-2.1-1.71.9
Baseline Anxiety1.01.01.2-1.11.00.8-1.0
Lifetime Intake0.40.40.50.6-0.5-0.70.7
Incentive Sensitization - Responses0.30.30.40.6-0.7-0.40.5
Incentive Sensitization - Breakpoint0.20.20.40.6-0.6-0.40.4
Progressive ratio test 1 active lever presses0.30.30.80.4-0.3-0.60.9
Progressive ratio test 1 breakpoint0.40.41.00.5-0.4-0.61.0
Progressive ratio test 1 inactive lever presses0.20.20.60.4-0.4-0.20.8
Progressive ratio test 2 active lever presses0.60.60.80.7-0.7-0.90.8
Progressive ratio test 2 breakpoint0.40.40.50.6-0.6-0.70.7
Progressive ratio test 2 inactive lever presses0.70.80.90.8-0.8-0.90.8
Total sessions with >9 infusions0.50.60.80.7-0.7-0.90.8
Short access day 1 total inactive lever presses4.34.86.72.2-2.1-1.82.6
Short access day 10 total inactive lever presses9.810.811.73.4-3.4-3.33.1
Short access day 1 total infusions0.70.71.20.7-0.7-0.81.1
Short access day 10 total infusions1.11.31.61.1-1.1-1.01.3
Short access total infusions0.50.60.80.7-0.6-0.80.9
Short access day 1 locomotion0.90.91.60.9-0.8-1.30.8
Short access day 10 total locomotion3.94.24.82.1-2.0-2.21.9
Short access total locomotion1.21.31.61.1-1.1-1.31.1
Compulsive drug intake0.70.71.0-0.70.61.0-0.9
One hour access (0.3 mA shock)0.40.50.80.7-0.7-0.90.5
One hour access (shock baseline)1.01.21.61.0-1.0-1.31.0
Number of responses in last shaping day0.10.10.5-0.00.1-0.70.1
Context. condit. distance diff. score1.82.22.31.5-1.4-1.51.5
Locomotion velocity, session 10.20.20.30.5-0.5-0.20.5
Locomotion distance, session 12.02.53.5-1.71.70.9-1.9
Locomotion velocity, session 20.91.01.31.1-1.2-0.41.1
Locomotion distance, session 20.91.31.6-1.31.20.5-1.3
Locomotion velocity, session 30.20.30.40.4-0.3-0.60.6
Locomotion distance, session 30.10.10.5-0.20.20.7-0.2
Stereotopy head waving bouts, day 32.22.73.8-1.61.51.9-1.5
Stereotopy head waving duration, day 30.91.11.4-1.11.11.2-0.9
Locomotion velocity, session 70.30.30.50.6-0.60.10.7
Locomotion distance, session 70.10.20.20.4-0.4-0.50.4
Stereotopy head waving bouts, day 70.20.20.3-0.50.50.5-0.4
Stereotopy head waving duration, day 70.91.12.1-1.01.01.5-0.8
Locomotion velocity, session 81.21.52.21.3-1.3-0.11.5
Locomotion distance, session 80.81.22.01.0-1.0-1.40.9
Degree of sensitization distance1.61.61.91.3-1.3-1.41.2
Degree of sensitization stereotypy0.00.00.0-0.20.20.10.1
Condit. Reinf. active minus inactive responses1.21.42.11.4-1.50.21.2
Condit. Reinf. active-inactive response ratio0.30.40.60.6-0.60.80.5
Condit. Reinf. active responses1.92.33.41.8-1.9-0.31.6
Condit. Reinf. inactive responses1.41.62.01.4-1.4-0.91.3
Incentive salience index mean1.82.23.41.7-1.8-0.11.6
Condit. Reinf. lever presses1.62.13.11.7-1.8-0.51.5
Time in familiar zone, hab. session 10.40.40.50.6-0.5-0.70.6
Time in novel zone, hab. session 10.70.71.2-0.80.71.1-0.7
Total zone transitions, hab. session 12.43.44.6-2.12.10.5-2.1
Total locomotion distance, hab. session 10.30.41.2-0.40.4-1.1-0.5
Locomotion velocity, hab. session 10.30.51.0-0.60.5-1.0-0.7
Time in familiar zone, hab. session 21.51.62.21.5-1.4-0.41.4
Time in novel zone, hab. session 21.81.82.3-1.51.51.1-1.3
Total zone transitions, hab. session 20.30.31.30.2-0.1-1.10.1
Total locomotion distance, hab. session 21.52.04.41.1-1.1-2.11.0
Locomotion velocity, hab. session 21.42.04.71.1-1.1-2.20.9
Novel to familiar place preference ratio0.30.31.1-0.40.41.0-0.1
Novelty place preference0.20.20.7-0.10.20.80.2
Time in novel zone, NPP test0.20.20.7-0.20.20.80.2
Total zone transitions, NPP test0.71.01.4-1.11.2-0.0-1.1
Total locomotion distance, NPP test0.10.10.50.0-0.1-0.7-0.1
Locomotion velocity, NPP test0.10.20.80.1-0.2-0.90.0
Pavlov. Cond. lever latency0.91.21.7-1.21.30.4-1.2
Pavlov. Cond. magazine entry latency0.60.81.9-0.60.61.4-0.6
Pavlov. Cond. change in total contacts0.50.52.00.0-0.11.4-0.1
Pavlov. Cond. index score0.20.20.90.1-0.20.90.1
Pavlov. Cond. latency score0.20.20.40.3-0.40.70.3
Pavlov. Cond. lever contacts1.41.72.51.5-1.6-0.21.4
Pavlov. Cond. magazine entry number0.60.72.30.5-0.4-1.50.5
Pavlov. Cond. intertrial magazine entries1.41.72.21.4-1.5-1.21.1
Pavlov. Cond. lever-magazine prob. diff.0.20.31.10.0-0.11.0-0.0
Pavlov. Cond. response bias0.30.30.40.5-0.60.60.4
Bone: apparent density0.91.52.6-1.11.01.6-1.0
Bone surface0.50.91.2-0.80.81.1-1.0
Bone volume1.01.72.0-1.31.21.4-1.3
Bone: connectivity density0.61.02.4-0.70.71.6-0.6
Bone: cortical apparent density2.93.74.4-2.12.11.6-1.9
Bone: cortical area0.20.20.50.4-0.5-0.70.1
Bone: cortical porosity0.30.40.60.7-0.8-0.30.5
Bone: cortical porosity1.21.31.71.2-1.3-0.91.0
Bone: cortical thickness0.10.20.3-0.50.4-0.4-0.5
Bone: cortical thickness0.10.10.20.0-0.1-0.50.0
Bone: cortical tissue density2.63.44.1-2.02.01.5-1.8
Bone: elastic displacement0.00.00.0-0.10.2-0.1-0.2
Bone: elastic work0.40.50.80.7-0.7-0.90.6
Bone: endosteal estimation0.20.50.70.8-0.8-0.70.5
Bone: endosteal perimeter0.30.71.51.0-1.2-0.10.5
Bone: final force0.20.30.4-0.60.50.5-0.6
Bone: final moment0.30.40.5-0.70.70.5-0.7
Bone: marrow area0.10.30.50.6-0.7-0.50.4
Bone: maximum diameter0.81.42.11.3-1.4-0.91.0
Bone: maximum force0.10.10.1-0.40.3-0.1-0.3
Bone: maximum moment0.10.10.2-0.40.4-0.1-0.4
Bone: minimum diameter0.10.20.40.6-0.7-0.20.3
Bone: periosteal estimation0.30.60.80.7-0.9-0.90.4
Bone: periosteal perimeter0.40.71.31.0-1.1-0.60.6
Bone: post-yield work0.71.01.4-1.21.20.5-1.0
Bone: stiffness0.40.60.9-0.90.90.3-0.8
Bone: tissue strength0.60.60.9-0.91.0-0.3-0.7
Bone: trabecular number0.50.91.9-0.70.71.4-0.7
Bone: trabecular spacing2.02.63.91.5-1.5-2.01.5
Bone: trabecular thickness0.10.10.2-0.20.10.5-0.4
Bone: trabecular tissue density2.12.93.7-1.91.91.0-1.9
Breakpoint value in progressive ratio session1.21.42.11.2-1.2-1.50.8
Distance traveled before self-admin1.61.72.0-1.41.41.0-1.4
Distance traveled after self-admin0.00.00.10.0-0.00.20.2
Delta time in closed arm before/after self-admin0.20.20.40.4-0.4-0.50.7
Delta time in open arm before/after self-admin0.20.20.5-0.40.30.2-0.7
Diff in mean of infusions in LGA sessions1.72.02.71.6-1.7-0.91.3
Extinction: sum of active levers before priming0.30.30.60.4-0.4-0.80.2
Active lever presses in extinction session 62.12.02.11.4-1.4-1.41.4
Delta distance traveled before/after self-admin3.03.24.21.9-1.9-1.22.0
Delta ambulatory time before/after self-admin1.71.82.21.5-1.5-0.91.5
Time in closed arm before self-admin2.02.34.4-0.90.82.1-1.8
Time in closed arm after self-admin0.10.10.20.3-0.40.5-0.3
Time in open arm before self-admin0.20.20.60.3-0.2-0.40.8
Time in open arm after self-admin0.10.10.30.1-0.1-0.50.3
Sum of active levers in priming session hrs 5-60.20.20.30.5-0.6-0.20.5
Time to tail flick, vehicle, before self-admin1.21.31.41.1-1.2-1.01.2
Time to tail flick, vehicle, after self-admin0.50.61.11.0-1.0-0.20.3
Time to tail flick, test, before self-admin0.60.61.11.0-1.10.20.2
Time to tail flick, test, after self-admin1.61.62.11.4-1.4-1.21.0
Delta time to tail flick, vehicle, before/after SA1.11.11.7-0.80.81.1-1.3
Delta time to tail flick, test, before/after SA0.30.31.00.1-0.1-1.00.4
Ambulatory time before self-admin0.50.50.8-0.80.90.3-0.7
Ambulatory time after self-admin0.10.10.20.2-0.2-0.10.4
Total heroin consumption0.40.40.70.7-0.7-0.80.2
Area under the delay curve1.01.01.4-1.21.10.2-1.2
Delay disc. indifference point, 0s delay0.10.20.40.5-0.6-0.00.1
Delay disc. indifference point, 16s delay0.10.10.3-0.50.40.2-0.3
Delay disc. indifference point, 2s delay1.82.03.2-1.51.40.8-1.8
Delay disc. indifference point, 24s delay0.50.51.00.6-0.6-0.41.0
Delay disc. indifference point, 4s delay0.60.61.0-0.90.9-0.0-1.0
Delay disc. indifference point, 8s delay1.21.21.7-1.31.30.3-1.2
Delay discount exponential model param0.90.91.31.1-1.1-0.11.1
Delay discount hyperbolic model param0.91.01.31.1-1.1-0.21.1
Fecal boli incidents, locomotor time 10.30.30.5-0.70.7-0.2-0.4
Change in fecal boli incidents, locomotor task0.40.40.80.5-0.5-0.90.7
Time >=10cm from walls, locomotor time 10.80.81.01.0-1.0-0.80.9
Bouts of movement, locomotor time 10.40.50.80.5-0.50.70.9
Total resting periods, locomotor time 10.30.31.00.1-0.11.00.6
Rest time, locomotor task time 10.00.00.1-0.00.10.20.4
Distance moved, locomotor task time 10.40.40.70.8-0.8-0.40.3
Vertical activity count, locomotor time 11.01.01.41.1-1.2-1.00.6
Time >=10cm from walls, locomotor time 22.42.53.11.7-1.8-1.41.4
Bouts of movement, locomotor time 20.40.40.6-0.80.80.5-0.4
Total resting periods, locomotor time 20.60.60.8-0.90.90.7-0.6
Rest time, locomotor task time 20.91.11.5-1.21.21.0-0.8
Distance moved, locomotor task time 21.72.03.11.7-1.8-1.01.0
Vertical activity count, locomotor time 22.52.83.41.8-1.9-1.81.1
Weight adjusted by age4.85.35.82.4-2.4-2.22.2
Seeking ratio, delayed vs. immediate footshock0.70.71.1-0.80.81.0-0.8
Locomotion in novel chamber0.30.30.90.3-0.2-0.60.9
Locomotion in novel chamber post-restriction0.20.20.5-0.30.30.7-0.5
Progressive ratio0.40.50.70.9-0.8-0.40.7
Food seeking constrained by brief footshock4.04.96.62.1-2.1-2.62.0
Seeking ratio, punishment vs. effort0.10.10.3-0.0-0.0-0.6-0.1
Run reversals in cocaine runway, females0.10.10.30.2-0.10.60.2
Run reversals in cocaine runway, males1.01.01.4-0.90.91.2-0.9
Latency to leave start box in cocaine runway1.71.82.31.3-1.3-1.51.2
Latency to leave start box in cocaine runway, F1.82.02.41.5-1.5-1.21.3
Latency to leave start box in cocaine runway, M0.10.10.2-0.10.1-0.50.0
Cd content in liver0.40.40.6-0.80.8-0.1-0.8
Co content in liver0.60.71.11.0-1.1-0.20.8
Cu content in liver2.42.93.6-1.81.91.5-1.5
Fe content in liver0.00.00.1-0.20.10.1-0.3
K content in liver0.40.41.7-0.10.01.30.1
Mg content in liver0.60.61.7-0.50.51.3-0.4
Mn content in liver0.20.20.80.1-0.10.90.2
Na content in liver5.76.17.7-2.32.22.8-2.5
Rb content in liver0.30.40.5-0.60.60.7-0.7
Se content in liver0.81.01.61.1-1.1-0.21.3
Sr content in liver1.51.41.7-1.21.31.0-1.1
Zn content in liver0.10.10.2-0.20.20.5-0.1