Cnr1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000008223 0.06 0.07 1.4e-05 0.03 0.03 0.02 0.03 3.2e-04 3.1e-04 1.3e-03 4.5e-04
2 Brain gene expression ENSRNOG00000008223 0.38 0.17 3.9e-16 0.17 0.19 0.17 0.18 1.5e-15 2.3e-17 7.4e-16 1.1e-16
3 Eye gene expression ENSRNOG00000008223 0.88 0.09 4.7e-03 0.02 0.08 0.13 0.01 1.6e-01 2.1e-02 4.8e-03 2.3e-01
4 IL mRNA stability ENSRNOG00000008223 0.23 0.18 7.4e-04 0.07 0.06 0.04 0.08 8.5e-03 1.8e-02 3.1e-02 5.6e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail2.37.410.43.2-2.6-1.5-3.2
BMI without tail2.85.87.82.6-2.8-1.7-2.4
Body weight4.519.026.65.2-4.4-2.1-5.1
Epididymis fat weight0.10.10.4-0.20.6-0.30.3
Glucose0.00.00.0-0.0-0.1-0.20.1
Heart weight0.81.21.71.1-0.9-1.3-1.0
Left kidney weight2.05.77.42.7-2.5-1.3-2.7
Right kidney weight2.16.07.92.8-2.6-1.3-2.8
Tail length0.82.43.91.6-2.0-1.0-1.5
Length with tail1.76.48.93.0-2.6-1.0-3.0
Length without tail0.91.93.81.8-0.80.2-1.9
Liver weight, left0.10.20.4-0.30.20.60.3
Liver weight, right0.50.82.2-0.60.61.50.5
Parametrial fat weight0.61.11.5-1.21.0-0.81.2
Retroperitoneal fat weight0.82.63.8-1.72.00.81.7
Intraocular pressure6.99.714.92.7-3.5-3.9-2.0
Extensor digitorum longus weight3.212.817.64.2-3.7-1.5-4.2
Soleus weight1.13.35.02.2-1.9-0.4-2.2
Tibialis anterior weight4.916.923.44.8-4.3-1.5-4.8
Tibia length1.33.64.42.1-2.0-1.4-2.0
Number of licking bursts0.30.40.5-0.60.70.70.6
Food consumed during 24 hour testing period1.21.42.01.4-1.3-0.5-1.4
Times rat made contact with spout0.10.10.3-0.00.20.50.0
Mean time between licks in bursts0.50.71.00.8-1.0-0.5-0.8
Mean num. licks in bursts0.30.30.40.6-0.6-0.4-0.5
Std. dev. time between licks in bursts0.30.30.60.7-0.50.2-0.8
Water consumed over 24 hours1.01.21.81.3-1.10.1-1.3
Indifference point 0 sec0.20.30.70.6-0.20.2-0.8
Indifference point AUC1.11.32.21.3-1.5-0.1-1.2
Indifference point function ln k0.30.41.0-0.61.0-0.20.5
Indifference point function log k0.30.41.0-0.61.0-0.20.5
Delay discounting total patch changes 0 sec0.20.30.50.40.00.7-0.7
Delay discounting total patch changes 12 sec1.82.43.61.7-1.9-0.8-1.6
Delay discounting total patch changes 18 sec0.60.82.60.4-0.21.6-0.6
Delay discounting total patch changes 24 sec1.01.31.91.3-1.20.3-1.4
Delay discounting total patch changes 6 sec0.71.11.51.2-1.2-0.3-1.1
Delay discounting time to switch 0 sec1.11.73.0-1.61.1-0.31.7
Delay discounting water rate 0 sec1.11.72.51.5-1.4-0.2-1.6
Delay discounting water rate 12 sec0.30.41.40.10.31.2-0.4
Delay discounting water rate 18 sec0.50.62.3-0.10.21.5-0.2
Delay discounting water rate 24 sec0.10.10.50.1-0.0-0.7-0.0
Delay discounting water rate 6 sec0.20.20.60.50.10.2-0.8
Locomotor activity0.40.71.0-0.90.8-0.31.0
Locomotor testing distance0.20.30.6-0.60.5-0.10.8
Locomotor testing rearing0.91.41.7-1.11.31.21.1
Light reinforcement 12.03.77.41.9-2.7-1.1-1.5
Light reinforcement 21.01.32.01.4-1.1-0.0-1.4
Reaction time number correct0.40.61.20.8-0.60.5-1.1
Reaction time mean minus median0.91.11.7-1.11.1-0.71.3
Reaction time mean minus median AUC0.81.01.5-1.11.10.11.2
Reaction time num false alarms0.81.12.21.0-0.8-1.5-0.8
Reaction time num false alarms AUC0.81.21.51.1-0.9-1.2-1.0
Reaction time trials correct on left0.40.61.20.8-0.60.5-1.1
Reaction time trials on left0.50.71.40.9-0.60.5-1.2
Reaction time mean0.40.61.60.6-0.4-1.3-0.5
Reaction time mean AUC0.20.30.70.4-0.2-0.8-0.4
Median of all reaction times0.91.21.61.1-0.9-1.3-1.1
Reaction time omissions0.40.61.40.9-0.10.4-1.2
Reaction time false alarm rate0.60.82.90.3-0.5-1.70.0
Reaction time premature initiation rate0.20.20.40.5-0.4-0.2-0.6
Reaction time premature initiations0.71.01.91.1-0.90.0-1.4
Std. dev. reaction times0.40.50.9-0.80.9-0.30.8
Reaction time trials completed0.50.71.40.9-0.60.5-1.2
Reaction time trials AUC0.50.71.30.9-0.60.5-1.2
Social response proportion1.71.82.6-1.51.60.21.5
Social responses0.91.22.7-0.61.21.60.2
Social time0.30.30.8-0.40.60.90.3
Conditioned locomotion0.20.20.60.1-0.10.8-0.3
Cocaine response after cond. corrected0.30.30.40.6-0.50.5-0.6
Cocaine response after cond. not corrected0.30.41.40.00.11.2-0.1
Cocaine response before conditioning0.30.40.6-0.50.80.80.3
Saline control response0.70.91.51.0-0.70.8-1.2
Condit. Reinf. active minus inactive responses0.81.03.10.30.51.8-0.8
Condit. Reinf. active-inactive response ratio0.20.20.80.10.00.9-0.2
Condit. Reinf. active responses0.81.13.00.50.51.7-0.9
Condit. Reinf. inactive responses0.30.30.60.30.50.8-0.6
Condit. Reinf. lever presses0.81.12.41.1-0.20.9-1.5
Condit. Reinf. lever reinforcers received0.81.12.10.80.21.5-1.2
Pavlov. Cond. lever latency0.30.51.0-0.5-0.2-1.00.8
Pavlov. Cond. magazine entry latency0.70.81.7-1.01.30.30.8
Pavlov. Cond. change in total contacts0.30.51.30.40.21.1-0.7
Pavlov. Cond. index score0.20.30.6-0.10.70.8-0.1
Pavlov. Cond. latency score0.20.20.30.30.30.6-0.6
Pavlov. Cond. lever contacts0.40.61.90.30.31.4-0.6
Pavlov. Cond. magazine entry number0.40.51.30.7-1.1-0.3-0.5
Pavlov. Cond. intertrial magazine entries0.00.00.0-0.0-0.10.10.1
Pavlov. Cond. lever-magazine prob. diff.0.30.40.8-0.30.80.9-0.0
Pavlov. Cond. response bias0.40.61.6-0.30.81.20.1
Conditioned reinforcement - actives0.20.10.30.20.1-0.5-0.5
Conditioned reinforcement - inactives2.83.111.70.5-0.7-3.4-0.2
Conditioned locomotion1.11.32.90.9-1.0-1.7-0.7
Intermittent access intake day 1-15 change3.23.24.3-2.12.00.72.0
Intermittent access intake escalation2.42.43.2-1.81.70.71.7
Intermittent access intake escalation 21.31.31.7-1.21.31.10.9
Intermitt. access day 1 inactive lever presses1.31.42.0-1.31.40.51.3
Intermitt. access day 15 inactive lever presses1.82.03.0-1.61.5-0.71.7
Intermitt. access escalation Index0.40.41.50.1-0.3-1.20.1
Intermittent access day 1 total infusions2.52.94.31.8-2.1-1.4-1.4
Intermittent access day 15 total infusions0.20.20.50.4-0.7-0.5-0.2
Intermittent access terminal intake (last 3 days)0.00.00.10.0-0.30.10.1
Intermittent access total infusions1.71.93.21.4-1.8-1.0-1.2
Intermittent access day 1 locomotion1.81.84.21.0-1.3-2.1-0.5
Intermittent access day 15 total locomotion1.41.54.20.7-1.0-2.1-0.3
Intermittent access total locomotion1.41.52.91.0-1.3-1.7-0.8
Intermittent access standard deviation1.21.31.8-1.31.40.01.3
Cocaine induced anxiety0.91.02.2-0.61.51.20.2
Post-drug Anxiety0.00.00.10.2-0.00.2-0.3
Baseline Anxiety0.70.81.40.5-1.2-1.2-0.2
Lifetime Intake1.82.03.11.4-1.8-1.2-1.2
Incentive Sensitization - Responses1.31.32.11.0-1.4-1.0-0.9
Incentive Sensitization - Breakpoint1.71.72.81.3-1.7-0.9-1.2
Progressive ratio test 1 active lever presses0.40.41.00.4-0.7-1.0-0.2
Progressive ratio test 1 breakpoint0.20.20.40.2-0.4-0.6-0.0
Progressive ratio test 1 inactive lever presses1.11.22.1-1.00.6-1.41.2
Progressive ratio test 2 active lever presses1.31.42.31.2-1.5-1.0-1.0
Progressive ratio test 2 breakpoint1.11.22.11.2-1.4-0.6-1.1
Progressive ratio test 2 inactive lever presses1.61.97.20.2-0.5-2.70.3
Total sessions with >9 infusions2.02.27.60.5-1.0-2.8-0.0
Short access day 1 total inactive lever presses1.41.65.9-0.1-0.4-2.40.5
Short access day 10 total inactive lever presses1.01.01.6-1.11.20.11.1
Short access day 1 total infusions0.60.61.4-0.60.2-1.20.9
Short access day 10 total infusions0.40.40.80.8-0.9-0.3-0.6
Short access total infusions1.01.12.70.7-1.1-1.6-0.4
Short access day 1 locomotion0.70.72.6-0.20.2-1.60.5
Short access day 10 total locomotion0.70.71.90.7-0.6-1.4-0.4
Short access total locomotion0.90.93.30.2-0.4-1.80.2
Compulsive drug intake0.20.10.4-0.30.3-0.60.3
One hour access (0.3 mA shock)0.40.40.60.7-0.5-0.8-0.7
One hour access (shock baseline)0.40.50.90.8-0.50.1-1.0
Number of responses in last shaping day0.70.72.2-0.20.71.5-0.0
Context. condit. distance diff. score0.70.91.3-1.01.10.31.1
Locomotion velocity, session 10.10.10.4-0.2-0.1-0.60.3
Locomotion distance, session 12.43.15.2-1.91.2-1.52.3
Locomotion velocity, session 20.00.00.10.0-0.1-0.3-0.1
Locomotion distance, session 23.14.57.9-2.51.7-1.02.8
Locomotion velocity, session 31.51.72.6-1.51.40.11.6
Locomotion distance, session 32.52.73.7-1.91.80.51.9
Stereotopy head waving bouts, day 30.50.51.00.9-0.60.2-1.0
Stereotopy head waving duration, day 31.11.42.61.4-0.90.2-1.6
Locomotion velocity, session 70.40.40.8-0.60.1-0.90.8
Locomotion distance, session 71.21.52.7-1.50.9-0.51.7
Stereotopy head waving bouts, day 70.30.40.50.7-0.6-0.3-0.7
Stereotopy head waving duration, day 71.41.73.01.6-1.2-0.1-1.7
Locomotion velocity, session 82.73.25.8-2.11.5-0.42.4
Locomotion distance, session 84.56.610.9-3.02.50.13.3
Degree of sensitization distance0.60.61.00.7-1.0-0.8-0.6
Degree of sensitization stereotypy0.20.20.40.6-0.50.0-0.6
Condit. Reinf. active minus inactive responses1.71.92.9-1.71.5-0.11.7
Condit. Reinf. active-inactive response ratio1.41.52.1-1.21.41.40.9
Condit. Reinf. active responses1.01.21.6-1.21.0-0.91.3
Condit. Reinf. inactive responses1.21.44.9-0.3-0.1-2.20.7
Incentive salience index mean0.60.70.9-0.90.7-0.71.0
Condit. Reinf. lever presses0.40.62.20.1-0.4-1.50.1
Time in familiar zone, hab. session 11.71.72.71.2-1.6-1.2-1.0
Time in novel zone, hab. session 15.55.36.3-2.32.52.32.1
Total zone transitions, hab. session 16.49.116.0-3.52.5-1.24.0
Total locomotion distance, hab. session 14.56.49.9-3.02.6-0.23.1
Locomotion velocity, hab. session 13.14.56.9-2.52.1-0.62.6
Time in familiar zone, hab. session 21.01.13.40.4-0.8-1.8-0.1
Time in novel zone, hab. session 20.60.62.0-0.20.51.4-0.1
Total zone transitions, hab. session 23.13.96.7-2.11.0-1.92.6
Total locomotion distance, hab. session 20.91.21.7-1.10.8-1.01.3
Locomotion velocity, hab. session 20.71.01.4-1.10.8-0.81.2
Novel to familiar place preference ratio0.10.20.3-0.30.50.60.2
Novelty place preference0.60.61.0-0.70.91.00.5
Time in novel zone, NPP test0.80.91.4-0.81.01.20.6
Total zone transitions, NPP test2.33.35.6-2.11.7-0.32.4
Total locomotion distance, NPP test0.50.71.1-0.91.0-0.30.9
Locomotion velocity, NPP test0.30.40.5-0.60.7-0.60.6
Pavlov. Cond. lever latency2.02.57.6-0.81.32.80.3
Pavlov. Cond. magazine entry latency1.72.26.50.4-1.4-2.50.1
Pavlov. Cond. change in total contacts0.40.41.2-0.40.1-1.10.6
Pavlov. Cond. index score2.22.88.50.6-1.5-2.9-0.1
Pavlov. Cond. latency score2.53.29.10.9-1.7-3.0-0.3
Pavlov. Cond. lever contacts2.73.28.51.0-1.7-2.9-0.5
Pavlov. Cond. magazine entry number2.32.98.3-0.81.62.90.3
Pavlov. Cond. intertrial magazine entries2.93.44.8-1.82.21.81.5
Pavlov. Cond. lever-magazine prob. diff.1.82.36.90.5-1.4-2.6-0.0
Pavlov. Cond. response bias2.22.77.70.7-1.6-2.8-0.2
Bone: apparent density0.30.50.90.70.10.7-0.9
Bone surface0.71.32.71.3-0.40.8-1.6
Bone volume0.30.51.10.8-0.00.6-1.1
Bone: connectivity density0.61.01.71.0-0.11.1-1.3
Bone: cortical apparent density0.10.10.3-0.40.10.20.5
Bone: cortical area2.13.36.02.3-1.4-0.4-2.4
Bone: cortical porosity0.00.00.10.10.20.3-0.2
Bone: cortical porosity0.30.30.70.7-0.30.2-0.8
Bone: cortical thickness0.40.71.31.1-0.40.0-1.1
Bone: cortical thickness0.40.51.40.30.31.2-0.6
Bone: cortical tissue density0.10.10.2-0.40.10.30.5
Bone: elastic displacement0.50.51.10.0-0.9-1.00.4
Bone: elastic work4.25.58.22.0-2.7-2.9-1.5
Bone: endosteal estimation3.16.711.23.1-2.4-0.1-3.3
Bone: endosteal perimeter2.55.17.42.6-2.3-0.9-2.7
Bone: final force1.72.75.12.0-1.3-0.3-2.3
Bone: final moment2.54.16.82.4-1.8-0.8-2.6
Bone: marrow area3.16.711.33.1-2.40.0-3.4
Bone: maximum diameter2.54.57.62.6-1.9-0.5-2.8
Bone: maximum force2.23.96.72.4-1.6-0.6-2.6
Bone: maximum moment2.84.97.62.7-1.9-1.0-2.8
Bone: minimum diameter1.12.13.51.8-1.2-0.6-1.9
Bone: periosteal estimation3.47.012.33.2-2.3-0.3-3.5
Bone: periosteal perimeter4.57.511.53.3-2.6-1.1-3.4
Bone: post-yield work0.60.81.31.1-0.80.1-1.1
Bone: stiffness0.30.40.60.40.60.8-0.8
Bone: tissue strength0.50.50.7-0.70.6-0.60.8
Bone: trabecular number0.40.61.70.20.71.3-0.5
Bone: trabecular spacing0.70.91.50.9-1.2-0.6-0.9
Bone: trabecular thickness0.10.10.20.10.5-0.1-0.2
Bone: trabecular tissue density4.86.89.9-2.83.11.62.6
Breakpoint value in progressive ratio session0.50.51.30.4-0.8-1.1-0.2
Distance traveled before self-admin0.20.20.40.3-0.30.6-0.6
Distance traveled after self-admin0.10.10.2-0.1-0.00.5-0.1
Delta time in closed arm before/after self-admin2.32.25.1-0.91.72.20.5
Delta time in open arm before/after self-admin1.71.64.30.6-1.4-2.1-0.2
Diff in mean of infusions in LGA sessions0.80.93.3-0.1-0.5-1.80.4
Extinction: sum of active levers before priming0.20.20.4-0.50.0-0.40.6
Active lever presses in extinction session 60.30.30.7-0.70.0-0.40.8
Delta distance traveled before/after self-admin0.10.10.3-0.40.20.00.5
Delta ambulatory time before/after self-admin0.30.30.7-0.50.1-0.50.8
Time in closed arm before self-admin3.43.96.22.4-1.9-0.1-2.5
Time in closed arm after self-admin0.91.01.71.1-0.21.0-1.3
Time in open arm before self-admin1.61.72.6-1.11.51.60.8
Time in open arm after self-admin0.70.82.1-0.5-0.3-1.50.8
Sum of active levers in priming session hrs 5-60.20.20.40.4-0.6-0.3-0.5
Time to tail flick, vehicle, before self-admin0.20.20.40.3-0.5-0.6-0.0
Time to tail flick, vehicle, after self-admin0.20.30.9-0.10.30.9-0.1
Time to tail flick, test, before self-admin4.14.14.42.1-2.1-2.0-1.9
Time to tail flick, test, after self-admin0.50.50.80.7-0.9-0.5-0.7
Delta time to tail flick, vehicle, before/after SA0.90.82.7-0.30.71.6-0.1
Delta time to tail flick, test, before/after SA1.00.91.3-1.10.90.01.2
Ambulatory time before self-admin0.00.00.1-0.1-0.10.3-0.1
Ambulatory time after self-admin0.10.10.30.2-0.6-0.1-0.2
Total heroin consumption0.70.82.30.5-0.8-1.5-0.4
Area under the delay curve0.10.10.4-0.10.10.70.0
Delay disc. indifference point, 0s delay1.61.83.9-1.01.32.00.7
Delay disc. indifference point, 16s delay0.10.10.10.3-0.2-0.1-0.3
Delay disc. indifference point, 2s delay1.51.76.5-0.20.52.5-0.1
Delay disc. indifference point, 24s delay0.00.00.1-0.20.10.00.2
Delay disc. indifference point, 4s delay0.20.20.4-0.50.2-0.30.6
Delay disc. indifference point, 8s delay0.20.20.8-0.10.20.9-0.1
Delay discount exponential model param0.10.10.20.1-0.0-0.4-0.1
Delay discount hyperbolic model param0.10.10.20.2-0.0-0.5-0.1
Fecal boli incidents, locomotor time 11.11.23.9-0.50.92.00.2
Change in fecal boli incidents, locomotor task0.20.20.60.2-0.4-0.80.0
Time >=10cm from walls, locomotor time 10.30.30.6-0.10.80.6-0.1
Bouts of movement, locomotor time 10.40.40.9-0.50.1-1.00.6
Total resting periods, locomotor time 10.20.20.3-0.40.1-0.50.5
Rest time, locomotor task time 10.50.61.3-0.5-0.1-1.20.9
Distance moved, locomotor task time 10.50.51.10.40.21.1-0.9
Vertical activity count, locomotor time 10.40.41.2-0.10.71.1-0.2
Time >=10cm from walls, locomotor time 21.11.22.70.8-0.11.6-1.2
Bouts of movement, locomotor time 21.61.84.70.7-1.4-2.2-0.1
Total resting periods, locomotor time 21.81.95.40.6-1.4-2.3-0.1
Rest time, locomotor task time 21.31.55.60.0-0.5-2.40.4
Distance moved, locomotor task time 20.20.30.8-0.20.60.9-0.1
Vertical activity count, locomotor time 20.30.30.80.30.10.9-0.5
Weight adjusted by age1.82.03.31.4-0.81.4-1.8
Seeking ratio, delayed vs. immediate footshock0.10.10.20.3-0.4-0.4-0.3
Locomotion in novel chamber1.31.62.51.4-1.6-0.1-1.4
Locomotion in novel chamber post-restriction1.51.85.40.3-1.2-2.30.4
Progressive ratio2.32.64.71.1-2.1-2.2-0.4
Food seeking constrained by brief footshock6.57.912.22.8-1.92.8-3.5
Seeking ratio, punishment vs. effort2.83.511.50.40.63.4-1.4
Run reversals in cocaine runway, females0.40.40.70.7-0.60.1-0.8
Run reversals in cocaine runway, males0.50.50.7-0.80.8-0.10.8
Latency to leave start box in cocaine runway0.91.01.61.1-1.00.5-1.2
Latency to leave start box in cocaine runway, F0.40.50.90.7-0.50.3-0.9
Latency to leave start box in cocaine runway, M0.60.61.20.6-0.51.1-0.7
Cd content in liver0.30.30.40.6-0.50.5-0.6
Co content in liver0.50.61.10.6-0.61.1-0.7
Cu content in liver0.40.50.6-0.80.80.60.6
Fe content in liver0.10.10.20.4-0.4-0.2-0.4
K content in liver1.81.82.4-1.61.40.81.5
Mg content in liver0.30.30.4-0.60.60.60.4
Mn content in liver0.00.00.10.20.0-0.2-0.2
Na content in liver2.52.73.3-1.81.81.11.7
Rb content in liver1.21.42.4-1.01.31.50.8
Se content in liver4.95.97.6-2.42.82.52.0
Sr content in liver3.93.64.9-2.22.00.72.2
Zn content in liver0.40.40.90.5-0.40.9-0.7