Kcnh6

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression ENSRNOG00000008078 0.05 0.03 6.3e-04 0 0.03 0.02 0.01 1.7e-01 2.2e-03 4.6e-03 1.3e-02
2 Eye gene expression ENSRNOG00000008078 0.69 0.12 1.4e-07 0.36 0.3 0.27 0.32 1.7e-06 1.8e-05 4.7e-05 6.9e-06
3 LHb isoform ratio ENSRNOT00000010816 0.15 0.08 7.2e-03 0.07 0.08 0.07 0.08 1.1e-02 4.9e-03 1.1e-02 6.8e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail0.31.12.41.50.2-0.9
BMI without tail0.81.72.90.4-1.4-1.7
Body weight1.56.412.0-1.3-2.4-3.5
Epididymis fat weight0.30.81.5-0.1-0.9-1.2
Glucose0.40.61.10.81.00.3
Heart weight0.10.20.30.50.2-0.6
Left kidney weight0.41.22.80.51.70.8
Right kidney weight0.20.51.3-0.31.10.5
Tail length1.75.26.5-2.0-2.6-2.3
Length with tail2.07.27.9-2.8-2.4-2.8
Length without tail0.61.32.8-1.7-0.4-0.9
Liver weight, left0.61.01.5-1.1-1.2-0.6
Liver weight, right0.91.52.80.21.71.4
Parametrial fat weight0.71.53.0-1.7-0.9-0.8
Retroperitoneal fat weight0.82.73.2-1.3-1.8-1.7
Intraocular pressure0.50.71.50.4-0.7-1.2
Extensor digitorum longus weight2.39.323.74.91.51.3
Soleus weight0.30.91.5-0.9-0.5-1.2
Tibialis anterior weight0.41.22.11.4-0.9-0.9
Tibia length0.20.61.0-0.91.00.1
Number of licking bursts0.10.10.1-0.3-0.1-0.3
Food consumed during 24 hour testing period2.22.74.0-0.5-2.0-2.0
Times rat made contact with spout0.80.91.2-1.0-0.7-1.1
Mean time between licks in bursts0.20.20.50.40.1-0.7
Mean num. licks in bursts0.00.00.10.1-0.3-0.2
Std. dev. time between licks in bursts0.10.10.30.6-0.00.1
Water consumed over 24 hours0.00.00.1-0.30.20.0
Indifference point 0 sec2.43.86.8-1.3-2.6-1.7
Indifference point AUC0.50.60.9-0.1-0.9-1.0
Indifference point function ln k0.20.20.4-0.40.40.6
Indifference point function log k0.20.20.4-0.40.40.6
Delay discounting total patch changes 0 sec2.74.37.0-1.5-2.6-2.0
Delay discounting total patch changes 12 sec2.83.77.5-0.8-2.7-1.8
Delay discounting total patch changes 18 sec2.22.94.0-1.0-1.9-2.0
Delay discounting total patch changes 24 sec2.12.63.6-1.4-1.9-1.5
Delay discounting total patch changes 6 sec1.72.63.5-1.3-1.9-1.6
Delay discounting time to switch 0 sec0.00.00.0-0.20.20.2
Delay discounting water rate 0 sec0.71.11.5-0.9-1.1-1.2
Delay discounting water rate 12 sec0.71.12.6-0.01.60.8
Delay discounting water rate 18 sec0.30.40.9-0.90.50.5
Delay discounting water rate 24 sec0.00.10.1-0.30.2-0.0
Delay discounting water rate 6 sec0.20.30.5-0.70.60.4
Locomotor activity0.60.91.4-0.7-1.2-0.9
Locomotor testing distance1.72.84.1-1.1-2.0-1.7
Locomotor testing rearing1.82.84.2-1.0-2.1-1.8
Light reinforcement 10.20.40.60.7-0.70.5
Light reinforcement 20.20.20.4-0.1-0.60.4
Reaction time number correct0.60.91.50.71.20.8
Reaction time mean minus median0.30.40.60.50.80.6
Reaction time mean minus median AUC1.41.82.41.01.51.4
Reaction time num false alarms3.95.46.3-2.1-2.3-2.5
Reaction time num false alarms AUC3.95.55.9-2.2-2.4-2.4
Reaction time trials correct on left0.60.91.50.71.20.8
Reaction time trials on left0.60.91.50.71.20.8
Reaction time mean0.91.22.00.41.21.4
Reaction time mean AUC1.01.42.40.51.21.5
Median of all reaction times0.91.22.20.31.21.5
Reaction time omissions0.20.30.4-0.50.60.5
Reaction time false alarm rate4.36.16.8-2.3-2.6-2.5
Reaction time premature initiation rate0.50.60.9-0.5-1.0-0.9
Reaction time premature initiations0.10.10.20.0-0.3-0.4
Std. dev. reaction times0.50.71.10.41.01.0
Reaction time trials completed0.60.91.50.71.20.8
Reaction time trials AUC0.70.91.60.81.30.8
Social response proportion0.30.30.40.60.6-0.3
Social responses0.10.20.4-0.0-0.4-0.6
Social time0.50.61.6-0.5-0.2-1.3
Conditioned locomotion0.30.30.80.3-0.9-0.3
Cocaine response after cond. corrected0.30.30.8-0.20.9-0.2
Cocaine response after cond. not corrected0.60.71.2-1.10.9-0.2
Cocaine response before conditioning0.40.51.4-1.20.10.3
Saline control response1.11.42.80.0-1.7-1.2
Condit. Reinf. active minus inactive responses7.08.712.0-3.5-2.8-2.5
Condit. Reinf. active-inactive response ratio5.86.09.7-3.1-2.1-2.0
Condit. Reinf. active responses6.08.49.6-2.9-3.1-2.6
Condit. Reinf. inactive responses0.91.12.3-0.3-1.5-0.9
Condit. Reinf. lever presses2.02.83.4-1.8-1.6-1.5
Condit. Reinf. lever reinforcers received5.27.38.0-2.8-2.8-2.4
Pavlov. Cond. lever latency0.50.60.70.90.80.7
Pavlov. Cond. magazine entry latency1.31.52.21.11.51.1
Pavlov. Cond. change in total contacts0.40.61.2-0.3-1.1-0.7
Pavlov. Cond. index score0.10.10.2-0.4-0.2-0.4
Pavlov. Cond. latency score0.10.10.3-0.5-0.0-0.3
Pavlov. Cond. lever contacts0.20.30.4-0.6-0.7-0.4
Pavlov. Cond. magazine entry number1.72.13.3-1.1-1.8-1.4
Pavlov. Cond. intertrial magazine entries9.912.817.0-2.7-4.1-3.7
Pavlov. Cond. lever-magazine prob. diff.0.00.00.1-0.3-0.0-0.2
Pavlov. Cond. response bias0.00.00.0-0.2-0.1-0.0
Conditioned reinforcement - actives0.60.61.0-0.2-0.8-1.0
Conditioned reinforcement - inactives1.01.11.5-1.0-0.9-1.2
Conditioned locomotion2.32.73.5-1.5-1.6-1.9
Intermittent access intake day 1-15 change0.70.71.4-0.5-0.7-1.2
Intermittent access intake escalation0.20.20.4-0.2-0.3-0.6
Intermittent access intake escalation 20.80.81.2-0.7-0.9-1.1
Intermitt. access day 1 inactive lever presses5.15.57.1-2.7-2.2-2.1
Intermitt. access day 15 inactive lever presses2.32.53.5-1.9-1.5-1.4
Intermitt. access escalation Index1.81.62.11.21.51.1
Intermittent access day 1 total infusions0.60.61.1-0.5-0.8-1.0
Intermittent access day 15 total infusions0.60.71.4-0.1-0.8-1.2
Intermittent access terminal intake (last 3 days)2.22.43.5-0.9-1.7-1.9
Intermittent access total infusions2.42.63.5-1.1-1.7-1.9
Intermittent access day 1 locomotion3.73.85.0-1.7-1.8-2.2
Intermittent access day 15 total locomotion4.64.96.4-1.8-2.3-2.5
Intermittent access total locomotion6.77.68.8-2.5-2.8-3.0
Intermittent access standard deviation1.41.41.6-1.2-1.2-1.3
Cocaine induced anxiety0.30.30.5-0.60.70.2
Post-drug Anxiety0.40.40.9-0.50.90.2
Baseline Anxiety0.80.81.20.71.10.8
Lifetime Intake2.73.03.8-1.3-2.0-1.9
Incentive Sensitization - Responses3.23.24.0-1.5-1.8-2.0
Incentive Sensitization - Breakpoint3.13.14.0-1.5-1.8-2.0
Progressive ratio test 1 active lever presses3.84.04.5-1.7-2.1-2.1
Progressive ratio test 1 breakpoint5.05.16.2-1.8-2.5-2.5
Progressive ratio test 1 inactive lever presses4.24.45.9-1.6-2.4-2.2
Progressive ratio test 2 active lever presses4.24.55.2-1.9-2.2-2.3
Progressive ratio test 2 breakpoint5.76.37.7-2.2-2.5-2.8
Progressive ratio test 2 inactive lever presses2.93.44.5-1.3-2.1-2.0
Total sessions with >9 infusions0.00.00.10.2-0.2-0.1
Short access day 1 total inactive lever presses1.31.52.3-1.5-0.8-1.2
Short access day 10 total inactive lever presses0.40.40.8-0.2-0.9-0.7
Short access day 1 total infusions0.60.71.3-0.2-1.1-0.8
Short access day 10 total infusions5.35.97.4-1.8-2.7-2.6
Short access total infusions3.33.64.9-1.5-2.2-1.9
Short access day 1 locomotion2.42.53.5-0.9-1.8-1.9
Short access day 10 total locomotion9.510.312.6-2.5-3.5-3.5
Short access total locomotion4.85.06.5-1.6-2.4-2.5
Compulsive drug intake0.70.71.7-0.11.30.7
One hour access (0.3 mA shock)1.41.62.5-0.8-1.3-1.6
One hour access (shock baseline)1.31.52.4-0.4-1.6-1.4
Number of responses in last shaping day1.71.72.5-1.4-0.8-1.6
Context. condit. distance diff. score0.30.41.21.1-0.20.0
Locomotion velocity, session 11.21.22.9-1.7-0.7-0.6
Locomotion distance, session 10.10.10.2-0.30.40.4
Locomotion velocity, session 21.11.32.5-1.6-1.0-0.6
Locomotion distance, session 20.00.00.1-0.3-0.10.3
Locomotion velocity, session 30.20.20.4-0.20.70.4
Locomotion distance, session 30.20.30.7-0.80.0-0.3
Stereotopy head waving bouts, day 30.50.61.10.10.81.1
Stereotopy head waving duration, day 30.40.50.80.70.60.9
Locomotion velocity, session 70.40.40.70.20.80.8
Locomotion distance, session 70.20.20.50.7-0.00.3
Stereotopy head waving bouts, day 70.40.40.7-0.30.70.9
Stereotopy head waving duration, day 71.11.42.60.31.21.6
Locomotion velocity, session 80.91.11.9-0.4-1.1-1.4
Locomotion distance, session 80.20.30.50.7-0.60.1
Degree of sensitization distance0.40.41.21.1-0.4-0.0
Degree of sensitization stereotypy0.50.60.9-0.00.90.9
Condit. Reinf. active minus inactive responses3.13.54.0-1.7-2.0-1.8
Condit. Reinf. active-inactive response ratio1.61.72.2-1.3-1.5-1.2
Condit. Reinf. active responses3.23.95.3-1.7-2.3-1.9
Condit. Reinf. inactive responses0.50.61.0-0.6-1.0-0.7
Incentive salience index mean3.33.95.4-2.3-1.9-1.7
Condit. Reinf. lever presses0.70.91.9-1.4-0.8-0.4
Time in familiar zone, hab. session 10.80.71.00.5-1.0-0.9
Time in novel zone, hab. session 11.00.91.7-0.11.31.1
Total zone transitions, hab. session 10.00.10.2-0.0-0.2-0.4
Total locomotion distance, hab. session 10.60.82.1-1.4-0.4-0.4
Locomotion velocity, hab. session 10.71.02.2-1.5-0.7-0.7
Time in familiar zone, hab. session 21.81.83.2-0.2-1.8-1.5
Time in novel zone, hab. session 22.12.13.8-0.01.91.6
Total zone transitions, hab. session 20.10.10.10.4-0.3-0.1
Total locomotion distance, hab. session 20.10.10.20.2-0.50.3
Locomotion velocity, hab. session 20.10.10.10.2-0.30.4
Novel to familiar place preference ratio0.30.30.5-0.7-0.3-0.7
Novelty place preference0.20.20.3-0.6-0.1-0.5
Time in novel zone, NPP test0.20.20.4-0.7-0.0-0.4
Total zone transitions, NPP test0.10.10.30.20.20.5
Total locomotion distance, NPP test0.20.30.7-0.8-0.30.2
Locomotion velocity, NPP test0.00.00.1-0.1-0.20.2
Pavlov. Cond. lever latency3.24.07.32.71.51.6
Pavlov. Cond. magazine entry latency4.25.47.7-2.8-2.2-2.0
Pavlov. Cond. change in total contacts4.04.36.3-2.5-1.9-1.7
Pavlov. Cond. index score4.15.27.6-2.8-2.1-1.9
Pavlov. Cond. latency score3.54.46.3-2.5-1.9-1.8
Pavlov. Cond. lever contacts3.03.55.5-2.4-1.5-1.7
Pavlov. Cond. magazine entry number3.23.96.22.51.91.4
Pavlov. Cond. intertrial magazine entries0.70.91.30.8-1.1-0.8
Pavlov. Cond. lever-magazine prob. diff.3.94.97.5-2.7-1.9-1.9
Pavlov. Cond. response bias4.85.910.8-3.3-1.9-1.8
Bone: apparent density1.72.87.8-2.8-0.7-0.5
Bone surface7.012.322.8-4.8-2.4-2.9
Bone volume5.28.817.0-4.1-2.0-2.3
Bone: connectivity density2.33.68.9-3.0-1.1-0.8
Bone: cortical apparent density6.78.711.92.72.73.4
Bone: cortical area1.92.95.7-2.4-0.8-1.6
Bone: cortical porosity17.418.827.3-5.2-3.1-4.4
Bone: cortical porosity10.911.717.6-4.2-2.1-3.6
Bone: cortical thickness3.66.011.00.73.32.6
Bone: cortical thickness3.03.56.00.22.52.1
Bone: cortical tissue density6.58.411.62.72.63.4
Bone: elastic displacement1.11.32.8-0.11.71.0
Bone: elastic work0.50.71.8-1.30.5-0.2
Bone: endosteal estimation16.735.939.3-5.7-6.0-6.3
Bone: endosteal perimeter18.738.447.0-5.6-6.0-6.9
Bone: final force1.11.84.4-2.1-0.3-0.9
Bone: final moment1.32.15.3-2.3-0.3-0.9
Bone: marrow area16.435.338.5-5.7-5.9-6.2
Bone: maximum diameter6.011.014.6-3.8-2.6-3.4
Bone: maximum force1.32.34.1-2.0-0.8-1.5
Bone: maximum moment1.62.75.1-2.3-0.8-1.6
Bone: minimum diameter13.825.530.7-4.8-4.7-5.5
Bone: periosteal estimation11.222.927.4-5.2-4.2-4.8
Bone: periosteal perimeter7.712.717.0-4.1-2.6-3.8
Bone: post-yield work3.04.16.2-1.9-1.6-2.5
Bone: stiffness0.40.60.7-0.7-0.8-0.9
Bone: tissue strength1.41.32.10.81.41.1
Bone: trabecular number2.33.68.6-2.9-1.1-0.9
Bone: trabecular spacing0.91.13.41.80.10.1
Bone: trabecular thickness3.13.78.6-2.9-0.9-1.3
Bone: trabecular tissue density2.02.84.31.02.11.8
Breakpoint value in progressive ratio session1.41.62.3-0.9-1.5-1.3
Distance traveled before self-admin0.40.40.7-0.60.4-0.8
Distance traveled after self-admin0.50.61.4-0.5-0.3-1.2
Delta time in closed arm before/after self-admin0.30.30.9-1.00.1-0.1
Delta time in open arm before/after self-admin1.51.43.51.90.30.9
Diff in mean of infusions in LGA sessions0.70.81.11.10.90.7
Extinction: sum of active levers before priming0.40.40.70.6-0.8-0.5
Active lever presses in extinction session 63.23.03.8-1.5-1.8-1.9
Delta distance traveled before/after self-admin0.10.10.20.30.10.4
Delta ambulatory time before/after self-admin0.00.00.10.0-0.30.3
Time in closed arm before self-admin0.50.61.10.00.81.0
Time in closed arm after self-admin0.30.30.5-0.30.70.7
Time in open arm before self-admin0.20.20.6-0.20.8-0.3
Time in open arm after self-admin0.40.40.70.8-0.2-0.7
Sum of active levers in priming session hrs 5-60.50.51.41.2-0.20.3
Time to tail flick, vehicle, before self-admin0.50.50.7-0.90.8-0.2
Time to tail flick, vehicle, after self-admin0.20.30.5-0.2-0.7-0.5
Time to tail flick, test, before self-admin0.30.30.40.50.70.3
Time to tail flick, test, after self-admin0.10.10.1-0.10.30.3
Delta time to tail flick, vehicle, before/after SA1.11.12.9-0.3-1.7-0.5
Delta time to tail flick, test, before/after SA0.10.00.10.0-0.10.3
Ambulatory time before self-admin0.50.51.1-0.70.1-1.0
Ambulatory time after self-admin0.70.81.2-0.9-0.5-1.1
Total heroin consumption1.01.22.0-1.4-0.8-0.9
Area under the delay curve0.00.00.00.00.20.0
Delay disc. indifference point, 0s delay0.90.91.20.90.91.1
Delay disc. indifference point, 16s delay0.10.10.3-0.2-0.1-0.6
Delay disc. indifference point, 2s delay0.10.10.2-0.5-0.10.3
Delay disc. indifference point, 24s delay0.80.81.4-0.3-0.9-1.2
Delay disc. indifference point, 4s delay0.50.51.3-0.21.10.6
Delay disc. indifference point, 8s delay0.50.50.90.30.80.9
Delay discount exponential model param0.00.00.10.20.00.3
Delay discount hyperbolic model param0.00.00.00.1-0.1-0.0
Fecal boli incidents, locomotor time 10.20.20.30.4-0.2-0.6
Change in fecal boli incidents, locomotor task0.70.71.10.81.00.5
Time >=10cm from walls, locomotor time 11.21.22.10.71.40.9
Bouts of movement, locomotor time 10.50.50.80.70.60.9
Total resting periods, locomotor time 10.60.71.00.70.81.0
Rest time, locomotor task time 10.30.30.90.20.30.9
Distance moved, locomotor task time 10.40.50.7-0.7-0.5-0.8
Vertical activity count, locomotor time 10.50.61.0-1.0-0.2-0.8
Time >=10cm from walls, locomotor time 20.40.41.1-1.10.2-0.3
Bouts of movement, locomotor time 20.30.40.70.80.40.4
Total resting periods, locomotor time 20.70.71.01.00.70.7
Rest time, locomotor task time 23.64.14.62.21.92.0
Distance moved, locomotor task time 21.11.22.5-1.6-0.8-0.8
Vertical activity count, locomotor time 23.64.05.3-2.3-1.9-1.7
Weight adjusted by age0.70.81.51.20.80.3
Seeking ratio, delayed vs. immediate footshock0.10.10.40.6-0.1-0.3
Locomotion in novel chamber0.40.50.8-0.90.4-0.7
Locomotion in novel chamber post-restriction1.51.71.9-1.2-1.3-1.4
Progressive ratio0.00.00.10.20.30.1
Food seeking constrained by brief footshock3.44.25.7-1.3-2.4-2.2
Seeking ratio, punishment vs. effort1.41.72.3-1.0-1.5-1.4
Run reversals in cocaine runway, females0.30.30.80.10.90.2
Run reversals in cocaine runway, males0.20.20.3-0.30.6-0.2
Latency to leave start box in cocaine runway0.20.20.40.20.60.3
Latency to leave start box in cocaine runway, F0.30.41.1-0.11.00.1
Latency to leave start box in cocaine runway, M0.20.20.30.5-0.10.5
Cd content in liver3.84.15.72.41.72.0
Co content in liver0.30.30.91.0-0.10.2
Cu content in liver0.10.10.3-0.3-0.6-0.1
Fe content in liver0.30.30.80.40.20.9
K content in liver0.90.91.1-1.0-1.1-0.6
Mg content in liver0.30.30.50.3-0.50.7
Mn content in liver0.40.51.0-0.60.11.0
Na content in liver0.70.81.7-0.7-1.3-0.5
Rb content in liver3.13.85.71.61.82.4
Se content in liver1.41.72.71.60.91.3
Sr content in liver0.80.71.3-1.2-0.2-0.9
Zn content in liver0.10.10.2-0.4-0.0-0.0