Zmat5

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain mRNA stability ENSRNOG00000007849 0.05 0.03 7.4e-04 0.01 0.01 0.02 0.01 3.2e-02 1.5e-02 5.0e-03 5.3e-02
2 Liver mRNA stability ENSRNOG00000007849 0.04 0.03 1.1e-03 0.03 0.02 0.02 0.02 6.0e-04 2.4e-03 2.1e-03 1.7e-03
3 PL mRNA stability ENSRNOG00000007849 0.04 0.03 9.4e-03 0 0.02 0.01 0.01 1.5e-01 1.1e-02 3.8e-02 5.3e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail0.00.00.1-0.1-0.3-0.1
BMI without tail0.61.21.51.21.11.0
Body weight0.31.12.51.60.0-0.8
Epididymis fat weight0.61.52.10.91.31.5
Glucose20.431.348.2-3.3-5.9-6.9
Heart weight0.81.22.6-1.6-0.9-0.4
Left kidney weight0.51.41.41.11.21.2
Right kidney weight1.44.16.01.62.02.5
Tail length1.64.710.33.21.80.7
Length with tail0.52.05.22.30.5-0.7
Length without tail0.61.42.9-0.2-1.1-1.7
Liver weight, left2.84.57.21.71.82.7
Liver weight, right2.43.97.31.01.92.7
Parametrial fat weight2.75.37.5-1.3-2.6-2.7
Retroperitoneal fat weight0.20.60.9-0.7-1.0-0.5
Intraocular pressure0.91.31.8-0.9-1.1-1.3
Extensor digitorum longus weight0.52.24.22.10.3-1.5
Soleus weight0.72.15.22.31.00.2
Tibialis anterior weight0.20.81.90.6-0.5-1.4
Tibia length1.13.23.82.01.81.6
Number of licking bursts0.50.61.41.20.1-0.6
Food consumed during 24 hour testing period1.62.03.6-0.8-1.2-1.9
Times rat made contact with spout3.23.74.3-2.1-1.9-1.8
Mean time between licks in bursts2.23.13.5-1.5-1.9-1.8
Mean num. licks in bursts2.22.75.8-2.4-1.3-0.7
Std. dev. time between licks in bursts0.20.20.3-0.5-0.6-0.1
Water consumed over 24 hours1.51.72.8-0.9-1.3-1.7
Indifference point 0 sec0.30.51.11.0-0.2-0.7
Indifference point AUC0.30.30.5-0.3-0.7-0.5
Indifference point function ln k0.71.01.50.81.20.9
Indifference point function log k0.71.01.50.81.20.9
Delay discounting total patch changes 0 sec0.30.50.80.8-0.4-0.9
Delay discounting total patch changes 12 sec0.30.40.40.6-0.6-0.7
Delay discounting total patch changes 18 sec2.22.94.1-0.9-2.0-2.0
Delay discounting total patch changes 24 sec1.01.21.9-1.4-1.3-0.2
Delay discounting total patch changes 6 sec0.30.51.10.2-0.6-1.0
Delay discounting time to switch 0 sec0.10.10.2-0.00.20.5
Delay discounting water rate 0 sec0.60.91.8-0.0-1.0-1.3
Delay discounting water rate 12 sec0.00.00.0-0.10.20.1
Delay discounting water rate 18 sec2.53.34.02.01.71.7
Delay discounting water rate 24 sec0.50.80.8-0.9-0.9-0.8
Delay discounting water rate 6 sec0.20.20.50.70.40.1
Locomotor activity0.91.42.2-0.4-1.5-1.4
Locomotor testing distance0.81.32.81.70.80.6
Locomotor testing rearing0.40.61.30.6-0.6-1.1
Light reinforcement 10.40.71.11.11.00.4
Light reinforcement 20.81.11.81.31.00.6
Reaction time number correct0.30.50.7-0.8-0.5-0.6
Reaction time mean minus median1.31.73.0-1.7-1.4-0.3
Reaction time mean minus median AUC0.30.30.7-0.8-0.50.2
Reaction time num false alarms0.50.71.11.00.90.6
Reaction time num false alarms AUC1.21.62.11.51.40.9
Reaction time trials correct on left0.30.50.7-0.8-0.5-0.6
Reaction time trials on left0.30.50.7-0.8-0.5-0.6
Reaction time mean0.30.30.7-0.8-0.60.1
Reaction time mean AUC0.20.20.4-0.6-0.30.4
Median of all reaction times0.10.10.2-0.5-0.40.1
Reaction time omissions0.30.40.7-0.40.40.8
Reaction time false alarm rate1.82.63.51.91.61.3
Reaction time premature initiation rate1.72.34.80.51.42.2
Reaction time premature initiations0.71.02.0-0.00.91.4
Std. dev. reaction times1.01.32.2-1.5-1.3-0.3
Reaction time trials completed0.30.50.7-0.8-0.5-0.6
Reaction time trials AUC0.30.40.5-0.7-0.5-0.6
Social response proportion3.13.44.5-1.3-2.0-2.1
Social responses2.53.24.9-1.1-1.9-2.2
Social time0.91.21.6-0.9-1.3-1.0
Conditioned locomotion1.31.52.60.71.21.6
Cocaine response after cond. corrected0.40.40.80.9-0.1-0.6
Cocaine response after cond. not corrected0.80.92.31.50.5-0.3
Cocaine response before conditioning0.30.40.60.40.80.6
Saline control response0.50.71.6-1.3-0.70.1
Condit. Reinf. active minus inactive responses0.20.20.3-0.6-0.30.5
Condit. Reinf. active-inactive response ratio0.10.10.2-0.4-0.5-0.0
Condit. Reinf. active responses0.20.30.7-0.8-0.50.3
Condit. Reinf. inactive responses0.30.30.7-0.9-0.50.2
Condit. Reinf. lever presses0.20.20.5-0.30.30.7
Condit. Reinf. lever reinforcers received0.20.30.5-0.7-0.40.4
Pavlov. Cond. lever latency1.52.15.52.30.9-0.3
Pavlov. Cond. magazine entry latency0.10.10.10.00.30.4
Pavlov. Cond. change in total contacts0.20.30.6-0.8-0.5-0.1
Pavlov. Cond. index score0.40.51.3-1.1-0.20.4
Pavlov. Cond. latency score0.30.41.0-1.0-0.00.6
Pavlov. Cond. lever contacts1.31.84.3-2.1-0.90.2
Pavlov. Cond. magazine entry number0.20.20.50.70.40.2
Pavlov. Cond. intertrial magazine entries0.00.00.0-0.2-0.1-0.2
Pavlov. Cond. lever-magazine prob. diff.0.30.40.8-0.90.10.6
Pavlov. Cond. response bias0.81.22.7-1.7-0.9-0.1
Conditioned reinforcement - actives0.40.40.5-0.6-0.5-0.7
Conditioned reinforcement - inactives0.30.30.5-0.3-0.7-0.6
Conditioned locomotion0.10.10.20.40.3-0.0
Intermittent access intake day 1-15 change1.51.51.8-1.2-1.1-1.4
Intermittent access intake escalation1.11.11.2-1.1-0.9-1.1
Intermittent access intake escalation 20.40.40.4-0.6-0.5-0.6
Intermitt. access day 1 inactive lever presses0.40.40.8-0.9-0.60.4
Intermitt. access day 15 inactive lever presses2.83.13.7-1.5-1.9-1.8
Intermitt. access escalation Index0.70.71.3-0.6-1.1-0.6
Intermittent access day 1 total infusions0.20.20.30.60.50.2
Intermittent access day 15 total infusions0.30.30.8-0.2-0.4-0.9
Intermittent access terminal intake (last 3 days)0.20.20.6-0.2-0.3-0.8
Intermittent access total infusions0.10.10.10.30.2-0.3
Intermittent access day 1 locomotion0.20.20.40.10.40.6
Intermittent access day 15 total locomotion0.50.61.1-0.4-0.7-1.1
Intermittent access total locomotion0.20.20.6-0.0-0.3-0.7
Intermittent access standard deviation0.30.30.4-0.50.50.6
Cocaine induced anxiety0.80.92.30.1-0.5-1.5
Post-drug Anxiety0.80.91.7-0.5-0.8-1.3
Baseline Anxiety0.60.71.1-1.0-0.8-0.5
Lifetime Intake0.20.30.40.60.6-0.1
Incentive Sensitization - Responses0.30.30.4-0.3-0.5-0.6
Incentive Sensitization - Breakpoint0.30.30.3-0.4-0.5-0.6
Progressive ratio test 1 active lever presses0.20.30.4-0.3-0.5-0.7
Progressive ratio test 1 breakpoint0.10.10.1-0.3-0.2-0.3
Progressive ratio test 1 inactive lever presses0.50.51.20.3-0.5-1.1
Progressive ratio test 2 active lever presses0.10.10.20.00.0-0.5
Progressive ratio test 2 breakpoint0.20.20.5-0.2-0.2-0.7
Progressive ratio test 2 inactive lever presses1.41.62.7-0.8-1.2-1.6
Total sessions with >9 infusions0.50.50.80.70.90.5
Short access day 1 total inactive lever presses0.91.02.51.60.5-0.5
Short access day 10 total inactive lever presses0.20.20.5-0.10.10.7
Short access day 1 total infusions0.90.91.00.91.00.9
Short access day 10 total infusions0.60.71.00.81.00.7
Short access total infusions1.41.62.31.21.51.0
Short access day 1 locomotion3.43.64.91.32.22.0
Short access day 10 total locomotion0.80.91.20.61.11.0
Short access total locomotion2.92.94.60.81.92.1
Compulsive drug intake0.80.81.9-0.40.51.4
One hour access (0.3 mA shock)0.10.10.10.10.3-0.4
One hour access (shock baseline)0.50.61.70.1-0.3-1.3
Number of responses in last shaping day0.40.41.00.31.00.4
Context. condit. distance diff. score0.60.81.5-0.80.31.2
Locomotion velocity, session 13.33.64.5-1.9-2.1-1.6
Locomotion distance, session 10.81.01.50.51.11.2
Locomotion velocity, session 22.83.34.4-2.1-1.8-1.5
Locomotion distance, session 20.60.92.5-1.6-0.30.3
Locomotion velocity, session 30.91.02.2-0.20.91.5
Locomotion distance, session 30.10.10.1-0.10.4-0.1
Stereotopy head waving bouts, day 30.30.40.8-0.10.60.9
Stereotopy head waving duration, day 30.30.30.6-0.60.10.7
Locomotion velocity, session 70.10.10.2-0.3-0.3-0.5
Locomotion distance, session 70.30.40.9-0.9-0.6-0.0
Stereotopy head waving bouts, day 70.00.10.1-0.10.10.4
Stereotopy head waving duration, day 70.40.50.70.70.80.6
Locomotion velocity, session 81.31.63.7-1.9-0.9-0.3
Locomotion distance, session 81.42.03.2-1.70.21.8
Degree of sensitization distance0.80.81.4-1.2-1.00.3
Degree of sensitization stereotypy0.10.10.20.50.10.1
Condit. Reinf. active minus inactive responses1.92.12.5-1.3-1.6-1.5
Condit. Reinf. active-inactive response ratio5.45.86.8-2.6-2.6-2.0
Condit. Reinf. active responses0.70.81.0-0.8-1.0-0.9
Condit. Reinf. inactive responses0.80.91.21.11.10.7
Incentive salience index mean0.91.11.7-0.7-1.0-1.3
Condit. Reinf. lever presses0.00.10.10.20.3-0.2
Time in familiar zone, hab. session 10.10.10.1-0.00.30.4
Time in novel zone, hab. session 10.30.30.70.90.40.0
Total zone transitions, hab. session 10.00.00.1-0.3-0.1-0.1
Total locomotion distance, hab. session 10.10.10.20.50.4-0.0
Locomotion velocity, hab. session 10.00.10.1-0.2-0.2-0.3
Time in familiar zone, hab. session 20.30.30.5-0.5-0.20.7
Time in novel zone, hab. session 20.40.40.60.70.2-0.8
Total zone transitions, hab. session 20.10.10.40.1-0.0-0.7
Total locomotion distance, hab. session 20.40.51.2-0.3-0.5-1.1
Locomotion velocity, hab. session 20.30.51.2-0.1-0.4-1.1
Novel to familiar place preference ratio1.41.42.3-0.6-1.2-1.5
Novelty place preference1.41.42.4-0.7-1.2-1.5
Time in novel zone, NPP test1.21.32.2-0.6-1.2-1.5
Total zone transitions, NPP test0.71.01.50.41.21.1
Total locomotion distance, NPP test0.10.20.30.20.60.5
Locomotion velocity, NPP test0.10.10.20.20.40.3
Pavlov. Cond. lever latency0.70.81.3-0.4-1.0-1.1
Pavlov. Cond. magazine entry latency0.60.81.6-0.60.81.3
Pavlov. Cond. change in total contacts0.10.10.4-0.1-0.1-0.7
Pavlov. Cond. index score0.81.02.0-0.40.91.4
Pavlov. Cond. latency score0.70.91.8-0.30.91.4
Pavlov. Cond. lever contacts0.50.50.9-0.20.81.0
Pavlov. Cond. magazine entry number0.60.81.11.0-0.4-1.0
Pavlov. Cond. intertrial magazine entries1.11.32.71.60.90.6
Pavlov. Cond. lever-magazine prob. diff.0.91.22.3-0.41.01.5
Pavlov. Cond. response bias0.60.71.0-0.40.91.0
Bone: apparent density0.61.01.40.61.21.1
Bone surface0.10.10.20.20.50.0
Bone volume0.20.30.50.50.70.3
Bone: connectivity density0.40.71.10.20.91.1
Bone: cortical apparent density0.20.20.50.70.2-0.3
Bone: cortical area0.50.81.41.20.3-0.9
Bone: cortical porosity0.40.40.70.80.60.5
Bone: cortical porosity0.20.20.40.30.40.7
Bone: cortical thickness0.91.53.11.81.1-0.0
Bone: cortical thickness1.92.22.71.11.61.6
Bone: cortical tissue density0.20.20.40.70.1-0.4
Bone: elastic displacement1.01.21.90.90.91.4
Bone: elastic work1.62.12.81.71.41.2
Bone: endosteal estimation0.00.10.10.30.0-0.2
Bone: endosteal perimeter0.20.30.80.4-0.4-0.9
Bone: final force0.10.10.10.40.3-0.3
Bone: final moment0.10.20.40.70.4-0.2
Bone: marrow area0.00.00.10.2-0.0-0.2
Bone: maximum diameter1.52.86.70.0-1.3-2.6
Bone: maximum force0.20.30.60.70.60.0
Bone: maximum moment0.30.61.11.10.80.1
Bone: minimum diameter0.10.20.40.50.60.4
Bone: periosteal estimation0.20.40.80.90.2-0.7
Bone: periosteal perimeter0.30.61.10.8-0.2-1.0
Bone: post-yield work0.00.10.10.20.1-0.3
Bone: stiffness0.00.00.0-0.10.0-0.1
Bone: tissue strength0.10.10.3-0.2-0.5-0.3
Bone: trabecular number0.71.11.40.81.21.1
Bone: trabecular spacing0.70.91.8-0.0-0.9-1.3
Bone: trabecular thickness1.72.03.40.61.51.9
Bone: trabecular tissue density1.31.82.7-1.5-1.6-0.7
Breakpoint value in progressive ratio session0.30.40.80.5-0.1-0.9
Distance traveled before self-admin1.21.31.81.31.30.6
Distance traveled after self-admin0.80.91.61.30.90.6
Delta time in closed arm before/after self-admin1.71.63.8-0.40.91.9
Delta time in open arm before/after self-admin2.42.35.70.5-0.9-2.4
Diff in mean of infusions in LGA sessions0.20.20.20.50.30.5
Extinction: sum of active levers before priming1.21.21.6-0.8-1.1-1.3
Active lever presses in extinction session 60.50.50.80.90.80.1
Delta distance traveled before/after self-admin0.10.20.2-0.5-0.50.1
Delta ambulatory time before/after self-admin0.20.20.3-0.5-0.30.3
Time in closed arm before self-admin0.50.61.31.10.70.2
Time in closed arm after self-admin1.11.12.80.30.71.7
Time in open arm before self-admin0.50.51.0-1.0-0.20.8
Time in open arm after self-admin2.02.22.9-1.3-1.3-1.7
Sum of active levers in priming session hrs 5-60.10.10.20.10.3-0.4
Time to tail flick, vehicle, before self-admin0.20.20.20.40.50.4
Time to tail flick, vehicle, after self-admin0.50.60.80.70.90.6
Time to tail flick, test, before self-admin0.10.10.3-0.1-0.10.6
Time to tail flick, test, after self-admin0.90.92.41.50.6-0.2
Delta time to tail flick, vehicle, before/after SA0.10.10.10.30.30.1
Delta time to tail flick, test, before/after SA0.30.20.60.4-0.0-0.8
Ambulatory time before self-admin2.22.33.61.91.70.8
Ambulatory time after self-admin0.80.91.41.21.00.5
Total heroin consumption0.10.10.10.20.4-0.2
Area under the delay curve0.80.81.80.9-0.1-1.3
Delay disc. indifference point, 0s delay0.40.40.90.90.4-0.5
Delay disc. indifference point, 16s delay1.81.94.2-0.4-1.1-2.1
Delay disc. indifference point, 2s delay1.71.93.71.91.40.3
Delay disc. indifference point, 24s delay0.80.81.8-0.3-0.7-1.4
Delay disc. indifference point, 4s delay1.01.12.51.60.7-0.5
Delay disc. indifference point, 8s delay0.40.41.00.1-0.4-1.0
Delay discount exponential model param0.70.71.4-0.90.01.2
Delay discount hyperbolic model param0.70.81.3-1.0-0.11.1
Fecal boli incidents, locomotor time 10.10.10.2-0.5-0.30.0
Change in fecal boli incidents, locomotor task1.00.91.0-1.0-1.0-0.9
Time >=10cm from walls, locomotor time 10.00.00.1-0.2-0.3-0.1
Bouts of movement, locomotor time 11.92.12.4-1.2-1.5-1.5
Total resting periods, locomotor time 12.32.62.7-1.6-1.7-1.6
Rest time, locomotor task time 10.70.81.0-1.0-0.8-0.8
Distance moved, locomotor task time 10.90.91.81.30.70.7
Vertical activity count, locomotor time 10.30.30.70.90.40.3
Time >=10cm from walls, locomotor time 20.20.20.2-0.4-0.5-0.3
Bouts of movement, locomotor time 20.00.00.10.20.20.1
Total resting periods, locomotor time 20.00.00.00.00.1-0.1
Rest time, locomotor task time 20.10.10.2-0.5-0.2-0.0
Distance moved, locomotor task time 20.00.00.1-0.2-0.30.1
Vertical activity count, locomotor time 20.00.00.00.2-0.00.1
Weight adjusted by age1.11.32.11.41.30.3
Seeking ratio, delayed vs. immediate footshock0.00.00.1-0.3-0.1-0.1
Locomotion in novel chamber1.31.63.7-0.11.11.9
Locomotion in novel chamber post-restriction1.51.84.7-2.2-0.8-0.0
Progressive ratio0.30.30.50.50.70.4
Food seeking constrained by brief footshock2.53.06.32.51.60.5
Seeking ratio, punishment vs. effort0.20.20.70.80.1-0.2
Run reversals in cocaine runway, females0.20.20.2-0.4-0.50.4
Run reversals in cocaine runway, males0.10.10.20.5-0.1-0.2
Latency to leave start box in cocaine runway0.40.40.60.70.60.5
Latency to leave start box in cocaine runway, F1.01.11.61.21.30.5
Latency to leave start box in cocaine runway, M0.30.20.4-0.5-0.70.2
Cd content in liver0.20.30.40.30.50.7
Co content in liver0.10.10.10.10.30.2
Cu content in liver0.20.30.5-0.1-0.7-0.5
Fe content in liver3.23.95.8-2.4-2.0-1.3
K content in liver2.12.13.51.91.50.7
Mg content in liver0.20.20.20.50.5-0.1
Mn content in liver2.22.53.21.71.81.1
Na content in liver2.12.24.8-0.4-1.3-2.2
Rb content in liver0.70.81.91.40.4-0.6
Se content in liver0.40.50.91.00.5-0.5
Sr content in liver1.61.52.5-0.6-1.3-1.6
Zn content in liver0.10.10.30.50.4-0.1