Gdf11

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression ENSRNOG00000007610 0.08 0.06 3.3e-07 0.07 0.08 0.08 0.07 3.3e-07 1.4e-07 1.2e-07 3.4e-07
2 Liver gene expression ENSRNOG00000007610 0.14 0.09 1.3e-09 0.08 0.07 0.08 0.08 1.9e-09 1.3e-08 6.9e-09 6.4e-09
3 NAcc gene expression ENSRNOG00000007610 0.05 0.04 3.9e-03 0.03 0.02 0.03 0.02 2.3e-03 9.2e-03 4.4e-03 8.0e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail5.718.326.6-1.6-5.1-5.2
BMI without tail0.91.82.9-0.0-1.6-1.7
Body weight0.93.65.5-0.5-2.3-2.3
Epididymis fat weight0.20.50.70.90.60.6
Glucose1.32.03.0-0.4-1.7-1.7
Heart weight0.00.00.00.1-0.10.1
Left kidney weight0.51.32.6-1.6-0.8-0.8
Right kidney weight0.10.40.6-0.80.40.5
Tail length4.212.716.92.14.14.1
Length with tail1.24.46.30.82.52.5
Length without tail0.40.81.4-1.2-0.7-0.7
Liver weight, left0.91.52.2-0.1-1.5-1.5
Liver weight, right0.91.52.1-0.9-1.3-1.5
Parametrial fat weight0.10.20.20.50.40.4
Retroperitoneal fat weight1.65.17.8-0.3-2.8-2.7
Intraocular pressure1.52.13.51.91.21.1
Extensor digitorum longus weight3.112.519.2-0.1-4.3-4.4
Soleus weight4.513.219.6-1.2-4.3-4.4
Tibialis anterior weight0.93.04.4-0.5-2.1-2.1
Tibia length1.02.94.11.12.01.9
Number of licking bursts1.72.03.00.5-1.7-1.7
Food consumed during 24 hour testing period0.30.40.7-0.3-0.7-0.8
Times rat made contact with spout0.50.61.00.2-0.9-1.0
Mean time between licks in bursts0.81.11.50.81.11.2
Mean num. licks in bursts0.40.50.8-0.20.90.8
Std. dev. time between licks in bursts0.40.51.2-1.10.30.3
Water consumed over 24 hours1.61.82.2-1.5-1.3-1.3
Indifference point 0 sec3.75.97.7-1.5-2.8-2.8
Indifference point AUC0.60.70.90.50.90.9
Indifference point function ln k0.20.30.3-0.4-0.6-0.6
Indifference point function log k0.20.30.3-0.4-0.6-0.6
Delay discounting total patch changes 0 sec3.25.26.9-1.4-2.6-2.6
Delay discounting total patch changes 12 sec0.91.21.90.1-1.4-1.3
Delay discounting total patch changes 18 sec0.00.00.00.0-0.1-0.1
Delay discounting total patch changes 24 sec0.50.60.9-0.4-0.9-0.9
Delay discounting total patch changes 6 sec1.92.93.7-1.1-1.9-1.9
Delay discounting time to switch 0 sec0.40.60.9-0.9-0.7-0.7
Delay discounting water rate 0 sec0.30.40.50.6-0.7-0.6
Delay discounting water rate 12 sec0.40.60.70.7-0.8-0.8
Delay discounting water rate 18 sec1.51.95.32.30.50.5
Delay discounting water rate 24 sec1.52.05.52.3-0.5-0.5
Delay discounting water rate 6 sec1.11.73.01.70.91.0
Locomotor activity1.72.74.4-0.22.11.9
Locomotor testing distance0.61.01.7-0.31.31.2
Locomotor testing rearing0.10.10.20.50.30.1
Light reinforcement 12.23.95.80.52.42.4
Light reinforcement 20.70.91.30.41.11.1
Reaction time number correct0.50.60.80.9-0.7-0.8
Reaction time mean minus median0.91.21.80.31.31.3
Reaction time mean minus median AUC0.70.91.0-1.00.91.0
Reaction time num false alarms0.30.50.70.1-0.8-0.8
Reaction time num false alarms AUC0.40.50.60.5-0.8-0.8
Reaction time trials correct on left0.50.60.80.9-0.7-0.8
Reaction time trials on left0.40.60.60.8-0.7-0.8
Reaction time mean0.60.81.3-0.31.01.1
Reaction time mean AUC0.20.30.4-0.50.50.6
Median of all reaction times0.30.40.6-0.40.70.8
Reaction time omissions0.10.10.4-0.6-0.2-0.1
Reaction time false alarm rate0.10.10.2-0.2-0.5-0.4
Reaction time premature initiation rate2.02.73.21.51.81.6
Reaction time premature initiations1.72.53.92.01.41.2
Std. dev. reaction times0.40.60.9-0.30.90.9
Reaction time trials completed0.40.60.60.8-0.7-0.8
Reaction time trials AUC0.50.71.01.0-0.7-0.8
Social response proportion0.50.61.00.11.00.8
Social responses5.47.010.90.43.33.2
Social time0.70.91.30.0-1.1-1.1
Conditioned locomotion0.60.71.61.3-0.5-0.6
Cocaine response after cond. corrected1.01.11.40.8-1.2-1.2
Cocaine response after cond. not corrected1.01.11.40.8-1.2-1.2
Cocaine response before conditioning0.20.30.4-0.10.70.6
Saline control response0.20.30.50.3-0.6-0.7
Condit. Reinf. active minus inactive responses2.22.73.31.31.81.8
Condit. Reinf. active-inactive response ratio2.02.13.31.81.21.2
Condit. Reinf. active responses0.91.21.90.21.41.3
Condit. Reinf. inactive responses0.20.30.6-0.80.30.3
Condit. Reinf. lever presses2.63.64.81.32.22.1
Condit. Reinf. lever reinforcers received0.81.11.70.51.31.2
Pavlov. Cond. lever latency1.11.52.3-0.5-1.5-1.4
Pavlov. Cond. magazine entry latency1.61.82.70.31.61.7
Pavlov. Cond. change in total contacts0.50.71.10.21.00.9
Pavlov. Cond. index score1.41.92.80.51.71.6
Pavlov. Cond. latency score1.41.82.80.31.71.6
Pavlov. Cond. lever contacts1.21.62.30.81.51.4
Pavlov. Cond. magazine entry number1.31.62.4-0.2-1.5-1.6
Pavlov. Cond. intertrial magazine entries0.50.61.00.4-0.9-1.0
Pavlov. Cond. lever-magazine prob. diff.1.41.82.70.31.61.6
Pavlov. Cond. response bias1.82.53.40.91.81.8
Conditioned reinforcement - actives0.90.92.4-1.6-0.3-0.3
Conditioned reinforcement - inactives0.60.71.10.0-1.0-1.0
Conditioned locomotion1.31.62.2-0.71.51.5
Intermittent access intake day 1-15 change0.10.10.20.20.40.4
Intermittent access intake escalation0.70.71.61.30.50.5
Intermittent access intake escalation 21.31.31.71.31.01.0
Intermitt. access day 1 inactive lever presses0.40.51.01.00.50.5
Intermitt. access day 15 inactive lever presses1.11.21.31.01.21.2
Intermitt. access escalation Index1.21.12.9-1.7-0.4-0.4
Intermittent access day 1 total infusions0.50.60.6-0.8-0.8-0.8
Intermittent access day 15 total infusions0.10.10.2-0.1-0.4-0.4
Intermittent access terminal intake (last 3 days)0.70.71.1-1.0-0.8-0.8
Intermittent access total infusions0.40.50.6-0.5-0.8-0.8
Intermittent access day 1 locomotion0.00.00.00.10.00.0
Intermittent access day 15 total locomotion0.20.20.30.10.50.5
Intermittent access total locomotion0.10.10.2-0.10.40.4
Intermittent access standard deviation0.10.10.10.20.30.3
Cocaine induced anxiety0.70.81.1-0.51.11.1
Post-drug Anxiety0.60.72.0-1.40.10.1
Baseline Anxiety0.00.00.10.4-0.0-0.0
Lifetime Intake1.71.92.0-1.3-1.4-1.4
Incentive Sensitization - Responses0.10.10.1-0.30.20.2
Incentive Sensitization - Breakpoint0.10.10.3-0.50.20.2
Progressive ratio test 1 active lever presses1.21.31.8-0.6-1.3-1.3
Progressive ratio test 1 breakpoint1.51.52.0-0.7-1.4-1.4
Progressive ratio test 1 inactive lever presses0.40.51.2-1.1-0.4-0.4
Progressive ratio test 2 active lever presses0.80.90.9-0.9-1.0-1.0
Progressive ratio test 2 breakpoint0.90.91.7-1.3-0.8-0.8
Progressive ratio test 2 inactive lever presses1.01.11.6-1.3-0.9-0.9
Total sessions with >9 infusions2.93.26.3-2.5-1.3-1.3
Short access day 1 total inactive lever presses0.10.20.3-0.6-0.3-0.3
Short access day 10 total inactive lever presses0.10.10.20.50.10.1
Short access day 1 total infusions4.14.47.0-2.6-1.8-1.8
Short access day 10 total infusions1.31.41.4-1.1-1.2-1.2
Short access total infusions4.24.75.7-2.4-2.0-2.0
Short access day 1 locomotion0.50.61.6-1.3-0.2-0.2
Short access day 10 total locomotion1.41.52.10.61.41.4
Short access total locomotion0.20.20.5-0.70.20.2
Compulsive drug intake0.20.20.2-0.2-0.5-0.5
One hour access (0.3 mA shock)0.40.50.6-0.4-0.8-0.8
One hour access (shock baseline)0.00.00.00.1-0.2-0.2
Number of responses in last shaping day0.40.40.7-0.10.70.8
Context. condit. distance diff. score0.10.20.30.0-0.5-0.5
Locomotion velocity, session 10.70.71.5-1.2-0.5-0.6
Locomotion distance, session 10.60.82.2-1.5-0.1-0.1
Locomotion velocity, session 20.91.02.5-1.60.50.6
Locomotion distance, session 21.21.72.1-0.91.41.5
Locomotion velocity, session 34.04.76.51.12.52.5
Locomotion distance, session 30.20.20.20.50.40.4
Stereotopy head waving bouts, day 33.54.36.30.32.52.5
Stereotopy head waving duration, day 32.12.53.8-0.01.91.9
Locomotion velocity, session 70.10.10.2-0.50.10.1
Locomotion distance, session 70.10.20.50.7-0.10.0
Stereotopy head waving bouts, day 70.40.40.5-0.70.70.6
Stereotopy head waving duration, day 70.30.40.7-0.90.60.5
Locomotion velocity, session 80.60.71.1-1.10.80.7
Locomotion distance, session 80.20.20.4-0.10.60.6
Degree of sensitization distance0.50.50.7-0.4-0.8-0.8
Degree of sensitization stereotypy0.30.30.5-0.7-0.4-0.5
Condit. Reinf. active minus inactive responses1.21.42.20.21.41.5
Condit. Reinf. active-inactive response ratio0.30.30.40.40.60.6
Condit. Reinf. active responses1.41.72.7-0.41.51.6
Condit. Reinf. inactive responses0.70.81.0-0.71.01.0
Incentive salience index mean0.60.71.1-0.50.91.0
Condit. Reinf. lever presses0.50.72.0-1.40.00.1
Time in familiar zone, hab. session 15.14.96.21.52.52.5
Time in novel zone, hab. session 15.14.95.3-2.0-2.3-2.3
Total zone transitions, hab. session 10.30.51.0-1.00.40.4
Total locomotion distance, hab. session 11.01.42.5-1.60.90.9
Locomotion velocity, hab. session 10.91.31.3-1.11.11.1
Time in familiar zone, hab. session 25.35.56.81.82.62.6
Time in novel zone, hab. session 26.46.57.6-2.1-2.7-2.8
Total zone transitions, hab. session 21.72.23.9-2.0-1.2-1.2
Total locomotion distance, hab. session 20.20.30.8-0.90.30.3
Locomotion velocity, hab. session 20.40.51.3-1.10.30.3
Novel to familiar place preference ratio4.04.24.5-1.9-2.1-2.1
Novelty place preference2.93.03.1-1.7-1.7-1.7
Time in novel zone, NPP test3.53.73.9-1.8-2.0-2.0
Total zone transitions, NPP test0.50.70.9-0.9-0.8-0.8
Total locomotion distance, NPP test0.40.61.3-1.1-0.5-0.4
Locomotion velocity, NPP test0.20.30.9-0.9-0.1-0.1
Pavlov. Cond. lever latency0.30.31.01.00.10.1
Pavlov. Cond. magazine entry latency1.41.82.60.81.51.6
Pavlov. Cond. change in total contacts0.20.20.3-0.4-0.6-0.4
Pavlov. Cond. index score0.20.30.4-0.40.50.6
Pavlov. Cond. latency score0.30.30.6-0.80.40.5
Pavlov. Cond. lever contacts0.50.61.6-1.3-0.3-0.2
Pavlov. Cond. magazine entry number0.40.60.9-0.4-0.8-0.9
Pavlov. Cond. intertrial magazine entries0.30.40.90.90.40.4
Pavlov. Cond. lever-magazine prob. diff.0.30.40.6-0.30.60.7
Pavlov. Cond. response bias0.60.71.10.40.91.0
Bone: apparent density2.03.38.3-2.9-0.8-0.9
Bone surface3.56.217.1-4.1-0.9-0.9
Bone volume4.06.818.0-4.2-1.1-1.2
Bone: connectivity density1.21.94.8-2.2-0.6-0.6
Bone: cortical apparent density1.21.62.3-0.6-1.5-1.5
Bone: cortical area2.64.05.7-2.4-1.8-1.8
Bone: cortical porosity0.30.41.1-1.0-0.2-0.2
Bone: cortical porosity1.21.22.7-1.6-0.8-0.7
Bone: cortical thickness2.13.43.7-1.7-1.9-1.9
Bone: cortical thickness0.40.50.80.2-0.9-0.9
Bone: cortical tissue density0.81.11.6-0.5-1.3-1.2
Bone: elastic displacement0.00.00.1-0.3-0.1-0.0
Bone: elastic work0.91.11.3-1.0-1.1-1.1
Bone: endosteal estimation1.22.63.0-1.7-1.6-1.6
Bone: endosteal perimeter0.30.72.0-1.40.10.1
Bone: final force3.76.06.7-2.2-2.5-2.6
Bone: final moment3.55.86.4-2.2-2.5-2.5
Bone: marrow area1.12.32.6-1.6-1.5-1.5
Bone: maximum diameter0.61.23.5-1.9-0.0-0.0
Bone: maximum force3.76.37.3-2.2-2.7-2.7
Bone: maximum moment3.66.37.2-2.2-2.6-2.7
Bone: minimum diameter1.11.93.4-1.8-1.1-1.1
Bone: periosteal estimation2.65.37.3-2.7-2.1-2.1
Bone: periosteal perimeter1.01.74.1-2.0-0.7-0.7
Bone: post-yield work0.40.50.6-0.4-0.8-0.8
Bone: stiffness5.07.89.7-2.1-3.1-3.1
Bone: tissue strength4.44.25.4-1.4-2.3-2.3
Bone: trabecular number0.50.82.1-1.50.50.4
Bone: trabecular spacing1.51.95.52.40.30.3
Bone: trabecular thickness5.26.315.1-3.9-1.3-1.4
Bone: trabecular tissue density3.75.27.9-0.3-2.7-2.8
Breakpoint value in progressive ratio session2.12.42.91.21.71.7
Distance traveled before self-admin0.60.61.00.21.00.9
Distance traveled after self-admin0.10.10.1-0.20.40.3
Delta time in closed arm before/after self-admin1.01.02.81.7-0.3-0.3
Delta time in open arm before/after self-admin1.11.01.5-0.5-1.2-1.2
Diff in mean of infusions in LGA sessions1.61.82.60.61.61.6
Extinction: sum of active levers before priming4.84.95.12.12.22.3
Active lever presses in extinction session 60.80.81.20.21.11.1
Delta distance traveled before/after self-admin0.10.10.2-0.4-0.3-0.3
Delta ambulatory time before/after self-admin0.30.40.8-0.9-0.4-0.4
Time in closed arm before self-admin0.60.71.3-1.1-0.7-0.7
Time in closed arm after self-admin0.40.40.5-0.4-0.7-0.7
Time in open arm before self-admin0.20.20.30.10.50.5
Time in open arm after self-admin0.50.60.9-0.0-0.9-0.9
Sum of active levers in priming session hrs 5-60.40.40.40.50.60.6
Time to tail flick, vehicle, before self-admin0.80.81.9-1.40.60.6
Time to tail flick, vehicle, after self-admin0.80.91.41.20.80.8
Time to tail flick, test, before self-admin0.60.61.3-1.10.50.6
Time to tail flick, test, after self-admin0.40.41.2-1.1-0.1-0.1
Delta time to tail flick, vehicle, before/after SA1.11.13.21.8-0.2-0.2
Delta time to tail flick, test, before/after SA0.80.71.51.20.60.5
Ambulatory time before self-admin0.20.20.3-0.10.50.5
Ambulatory time after self-admin0.00.00.1-0.30.10.0
Total heroin consumption1.61.92.90.31.71.7
Area under the delay curve0.00.00.0-0.2-0.2-0.2
Delay disc. indifference point, 0s delay2.52.73.3-1.8-1.6-1.6
Delay disc. indifference point, 16s delay0.20.20.20.30.50.5
Delay disc. indifference point, 2s delay0.40.40.4-0.6-0.6-0.6
Delay disc. indifference point, 24s delay0.10.10.20.0-0.4-0.4
Delay disc. indifference point, 4s delay0.30.30.6-0.80.30.3
Delay disc. indifference point, 8s delay0.10.10.30.5-0.0-0.0
Delay discount exponential model param0.00.00.00.10.10.1
Delay discount hyperbolic model param0.10.10.10.30.30.3
Fecal boli incidents, locomotor time 10.60.61.51.2-0.4-0.4
Change in fecal boli incidents, locomotor task0.50.51.2-1.10.30.3
Time >=10cm from walls, locomotor time 11.21.21.5-1.2-1.1-1.1
Bouts of movement, locomotor time 10.40.40.50.40.70.7
Total resting periods, locomotor time 10.80.91.20.51.11.1
Rest time, locomotor task time 10.30.30.40.10.60.6
Distance moved, locomotor task time 11.61.72.5-1.6-1.1-1.1
Vertical activity count, locomotor time 11.01.01.3-0.7-1.2-1.2
Time >=10cm from walls, locomotor time 20.60.71.00.2-1.0-1.0
Bouts of movement, locomotor time 20.30.41.1-1.00.20.2
Total resting periods, locomotor time 20.50.51.5-1.20.10.1
Rest time, locomotor task time 20.10.10.2-0.5-0.0-0.0
Distance moved, locomotor task time 20.10.10.20.50.00.0
Vertical activity count, locomotor time 20.50.60.80.4-0.9-0.9
Weight adjusted by age0.10.10.30.50.20.2
Seeking ratio, delayed vs. immediate footshock0.50.60.7-0.60.80.8
Locomotion in novel chamber0.20.30.3-0.3-0.6-0.6
Locomotion in novel chamber post-restriction2.93.44.61.02.12.1
Progressive ratio0.91.01.4-0.4-1.2-1.2
Food seeking constrained by brief footshock1.92.32.71.21.71.7
Seeking ratio, punishment vs. effort2.42.93.71.21.91.9
Run reversals in cocaine runway, females1.21.21.6-0.41.31.3
Run reversals in cocaine runway, males1.21.21.8-0.21.31.3
Latency to leave start box in cocaine runway1.11.22.3-1.5-0.8-0.8
Latency to leave start box in cocaine runway, F1.92.14.2-2.1-1.0-1.0
Latency to leave start box in cocaine runway, M0.20.20.60.80.10.1
Cd content in liver0.20.20.40.1-0.6-0.4
Co content in liver1.41.62.01.01.31.4
Cu content in liver2.32.73.6-1.9-1.6-1.5
Fe content in liver0.20.30.40.1-0.6-0.6
K content in liver0.40.40.8-0.90.50.3
Mg content in liver0.40.41.1-1.10.30.2
Mn content in liver1.71.95.7-2.4-0.1-0.2
Na content in liver0.20.20.3-0.6-0.3-0.5
Rb content in liver2.02.54.2-2.0-1.3-1.3
Se content in liver0.00.00.0-0.10.20.2
Sr content in liver0.50.50.90.90.50.5
Zn content in liver3.94.35.22.31.92.0