Ikzf3

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000007200 0.05 0.04 3.8e-03 0.02 0.02 0.02 0.02 4.2e-03 3.0e-03 1.9e-03 4.1e-03
2 Brain gene expression ENSRNOG00000007200 0.12 0.07 7.9e-05 0.01 0.04 0.04 0.04 2.5e-02 5.2e-05 5.2e-05 6.7e-05
3 NAcc gene expression ENSRNOG00000007200 0.05 0.04 1.0e-03 0.04 0.04 0.03 0.04 4.5e-04 8.2e-04 4.0e-03 9.0e-04
4 PL gene expression ENSRNOG00000007200 0.12 0.07 7.2e-08 0.09 0.07 0.06 0.09 1.7e-07 2.6e-06 1.1e-05 2.5e-07

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail1.03.15.7-0.9-0.4-2.4-2.4
BMI without tail0.00.00.00.1-0.1-0.2-0.1
Body weight3.113.223.5-2.4-1.0-4.8-4.7
Epididymis fat weight0.10.30.4-0.20.6-0.6-0.6
Glucose0.30.41.10.20.20.71.1
Heart weight2.13.03.9-2.0-1.1-1.9-1.9
Left kidney weight1.02.84.2-1.4-1.3-1.9-2.0
Right kidney weight0.10.40.70.00.4-0.9-0.8
Tail length0.30.81.2-1.0-0.7-0.8-1.1
Length with tail2.48.613.2-2.6-1.5-3.5-3.6
Length without tail2.96.311.3-1.7-0.5-3.2-3.4
Liver weight, left0.00.10.2-0.00.20.2-0.4
Liver weight, right0.40.60.80.80.80.90.7
Parametrial fat weight1.93.76.12.52.31.51.0
Retroperitoneal fat weight0.00.10.10.30.3-0.3-0.3
Intraocular pressure1.72.43.3-1.5-1.3-1.8-1.5
Extensor digitorum longus weight7.831.338.9-5.4-4.2-6.2-6.2
Soleus weight0.20.61.11.01.1-0.00.4
Tibialis anterior weight1.03.35.6-1.3-0.7-2.3-2.4
Tibia length0.72.14.7-0.8-0.1-2.2-1.7
Number of licking bursts0.50.50.90.81.00.20.7
Food consumed during 24 hour testing period0.60.71.4-0.5-0.3-1.2-0.9
Times rat made contact with spout1.21.41.91.41.21.01.1
Mean time between licks in bursts0.91.32.9-0.5-0.4-1.7-1.4
Mean num. licks in bursts0.10.10.30.2-0.10.50.2
Std. dev. time between licks in bursts0.10.20.20.30.4-0.4-0.5
Water consumed over 24 hours0.10.10.3-0.00.1-0.5-0.1
Indifference point 0 sec1.42.34.60.90.21.92.2
Indifference point AUC0.10.10.1-0.3-0.10.10.4
Indifference point function ln k0.20.30.9-0.4-0.9-0.20.1
Indifference point function log k0.20.30.9-0.4-0.9-0.20.1
Delay discounting total patch changes 0 sec1.11.84.00.70.01.72.0
Delay discounting total patch changes 12 sec4.96.58.92.32.03.02.8
Delay discounting total patch changes 18 sec0.50.61.50.40.10.91.2
Delay discounting total patch changes 24 sec1.11.42.90.60.41.51.7
Delay discounting total patch changes 6 sec2.03.14.81.40.92.22.2
Delay discounting time to switch 0 sec0.10.20.30.60.50.4-0.0
Delay discounting water rate 0 sec0.00.00.10.20.00.30.3
Delay discounting water rate 12 sec0.20.30.6-0.8-0.4-0.7-0.4
Delay discounting water rate 18 sec0.60.81.00.91.00.70.9
Delay discounting water rate 24 sec0.60.81.11.00.80.90.8
Delay discounting water rate 6 sec1.42.02.61.31.11.61.5
Locomotor activity0.81.22.11.31.40.50.8
Locomotor testing distance1.72.93.91.81.21.62.0
Locomotor testing rearing4.46.911.22.31.03.13.4
Light reinforcement 12.44.46.32.21.62.52.1
Light reinforcement 21.21.62.11.41.41.31.0
Reaction time number correct0.60.81.3-0.9-0.1-1.1-1.1
Reaction time mean minus median0.40.50.7-0.7-0.6-0.8-0.9
Reaction time mean minus median AUC0.00.00.1-0.1-0.3-0.3-0.1
Reaction time num false alarms0.91.31.71.31.20.91.0
Reaction time num false alarms AUC0.71.01.51.21.20.70.7
Reaction time trials correct on left0.60.81.3-0.9-0.1-1.1-1.1
Reaction time trials on left0.60.81.2-0.9-0.1-1.1-1.1
Reaction time mean0.00.00.1-0.1-0.3-0.1-0.2
Reaction time mean AUC0.00.00.1-0.1-0.3-0.1-0.1
Median of all reaction times0.10.20.30.50.10.50.5
Reaction time omissions0.91.21.51.21.11.20.9
Reaction time false alarm rate1.11.52.31.51.11.21.1
Reaction time premature initiation rate0.20.30.70.50.80.30.3
Reaction time premature initiations0.20.20.3-0.20.5-0.6-0.5
Std. dev. reaction times0.10.10.2-0.2-0.1-0.4-0.5
Reaction time trials completed0.60.81.2-0.9-0.1-1.1-1.1
Reaction time trials AUC0.60.81.2-1.0-0.3-1.1-1.0
Social response proportion0.20.20.3-0.5-0.6-0.4-0.1
Social responses0.40.50.70.80.80.60.7
Social time0.50.71.90.91.4-0.20.2
Conditioned locomotion0.10.10.2-0.1-0.30.50.3
Cocaine response after cond. corrected1.82.03.01.31.41.11.7
Cocaine response after cond. not corrected2.22.44.11.31.41.32.0
Cocaine response before conditioning0.20.20.5-0.2-0.40.40.7
Saline control response0.10.10.2-0.10.1-0.40.4
Condit. Reinf. active minus inactive responses0.91.11.51.21.21.00.7
Condit. Reinf. active-inactive response ratio1.21.32.11.41.41.00.6
Condit. Reinf. active responses1.82.53.41.81.81.41.1
Condit. Reinf. inactive responses2.02.53.01.71.51.61.5
Condit. Reinf. lever presses0.00.00.00.20.00.10.1
Condit. Reinf. lever reinforcers received1.52.22.71.61.61.51.1
Pavlov. Cond. lever latency0.30.30.6-0.8-0.7-0.2-0.5
Pavlov. Cond. magazine entry latency0.10.10.3-0.30.1-0.5-0.1
Pavlov. Cond. change in total contacts0.30.50.90.50.30.71.0
Pavlov. Cond. index score0.20.30.40.60.70.10.6
Pavlov. Cond. latency score0.10.20.30.40.5-0.00.4
Pavlov. Cond. lever contacts0.81.11.61.31.20.71.0
Pavlov. Cond. magazine entry number0.10.10.2-0.1-0.30.1-0.4
Pavlov. Cond. intertrial magazine entries2.53.24.1-2.0-2.0-1.5-1.7
Pavlov. Cond. lever-magazine prob. diff.0.10.20.30.40.6-0.00.4
Pavlov. Cond. response bias1.11.51.71.31.30.91.2
Conditioned reinforcement - actives0.40.41.10.00.10.61.0
Conditioned reinforcement - inactives1.21.42.40.90.61.51.3
Conditioned locomotion0.30.30.60.20.40.70.7
Intermittent access intake day 1-15 change0.20.20.30.50.40.6-0.1
Intermittent access intake escalation0.20.20.40.50.60.6-0.1
Intermittent access intake escalation 20.20.20.40.30.40.0-0.6
Intermitt. access day 1 inactive lever presses2.12.33.61.91.41.80.5
Intermitt. access day 15 inactive lever presses2.93.25.71.71.12.41.7
Intermitt. access escalation Index2.01.83.8-0.7-0.9-1.9-1.4
Intermittent access day 1 total infusions0.20.20.30.30.50.50.6
Intermittent access day 15 total infusions0.30.30.70.30.50.80.5
Intermittent access terminal intake (last 3 days)0.50.50.70.70.70.90.6
Intermittent access total infusions0.10.10.20.10.40.40.3
Intermittent access day 1 locomotion0.30.30.6-0.10.10.70.8
Intermittent access day 15 total locomotion0.30.30.60.20.40.80.7
Intermittent access total locomotion0.40.51.10.20.21.00.8
Intermittent access standard deviation0.80.91.70.80.81.30.8
Cocaine induced anxiety1.11.23.00.20.3-1.7-1.3
Post-drug Anxiety0.10.10.30.20.2-0.50.3
Baseline Anxiety1.41.53.6-0.2-0.41.51.9
Lifetime Intake0.10.20.20.20.50.50.3
Incentive Sensitization - Responses1.01.01.70.90.81.31.0
Incentive Sensitization - Breakpoint1.01.01.60.90.81.31.0
Progressive ratio test 1 active lever presses0.60.61.80.40.00.71.3
Progressive ratio test 1 breakpoint0.50.51.50.40.00.71.2
Progressive ratio test 1 inactive lever presses1.11.11.81.00.51.41.2
Progressive ratio test 2 active lever presses0.90.91.90.60.41.11.4
Progressive ratio test 2 breakpoint0.60.61.40.50.30.91.2
Progressive ratio test 2 inactive lever presses0.40.50.90.40.61.00.6
Total sessions with >9 infusions0.50.61.40.2-0.10.91.2
Short access day 1 total inactive lever presses1.61.83.40.81.11.81.4
Short access day 10 total inactive lever presses0.40.41.40.00.4-0.3-1.2
Short access day 1 total infusions0.40.51.30.40.31.10.5
Short access day 10 total infusions0.50.50.80.60.70.60.9
Short access total infusions0.10.10.30.00.20.60.4
Short access day 1 locomotion2.72.84.91.71.12.21.5
Short access day 10 total locomotion1.21.31.91.10.71.31.4
Short access total locomotion0.20.20.70.0-0.10.80.5
Compulsive drug intake1.61.52.8-1.6-1.7-0.8-0.5
One hour access (0.3 mA shock)0.10.10.2-0.5-0.3-0.2-0.3
One hour access (shock baseline)0.40.50.90.70.90.70.4
Number of responses in last shaping day0.30.30.8-0.1-0.00.90.7
Context. condit. distance diff. score2.63.15.2-2.1-2.3-1.5-0.9
Locomotion velocity, session 10.20.20.5-0.20.3-0.4-0.7
Locomotion distance, session 11.11.43.5-0.70.3-1.2-1.9
Locomotion velocity, session 20.10.20.5-0.4-0.2-0.2-0.7
Locomotion distance, session 20.40.61.70.41.3-0.0-0.7
Locomotion velocity, session 30.10.10.1-0.2-0.20.1-0.4
Locomotion distance, session 30.20.30.5-0.4-0.2-0.6-0.7
Stereotopy head waving bouts, day 31.72.03.91.10.41.72.0
Stereotopy head waving duration, day 30.10.20.40.3-0.00.30.6
Locomotion velocity, session 70.50.61.0-0.7-0.1-1.0-1.0
Locomotion distance, session 70.20.20.5-0.7-0.4-0.3-0.4
Stereotopy head waving bouts, day 70.50.50.90.80.50.60.9
Stereotopy head waving duration, day 70.20.20.40.60.50.40.5
Locomotion velocity, session 86.37.59.4-2.7-2.1-3.1-3.0
Locomotion distance, session 80.91.31.9-1.1-0.6-1.4-1.4
Degree of sensitization distance0.70.71.2-1.1-0.9-0.7-0.7
Degree of sensitization stereotypy0.80.91.51.00.80.81.2
Condit. Reinf. active minus inactive responses0.40.51.20.1-0.01.10.8
Condit. Reinf. active-inactive response ratio0.40.51.0-0.1-0.51.00.8
Condit. Reinf. active responses0.40.51.30.20.11.10.9
Condit. Reinf. inactive responses0.20.20.30.40.50.40.6
Incentive salience index mean1.31.63.30.90.61.81.4
Condit. Reinf. lever presses1.11.52.50.90.91.61.3
Time in familiar zone, hab. session 11.71.62.91.51.70.90.7
Time in novel zone, hab. session 10.60.61.0-0.5-1.00.50.9
Total zone transitions, hab. session 11.41.93.0-1.4-0.9-1.4-1.7
Total locomotion distance, hab. session 10.10.10.2-0.4-0.30.0-0.2
Locomotion velocity, hab. session 10.40.61.0-0.8-0.5-0.7-1.0
Time in familiar zone, hab. session 21.01.01.31.11.11.10.7
Time in novel zone, hab. session 20.00.00.1-0.1-0.30.10.2
Total zone transitions, hab. session 20.40.60.8-0.9-0.4-0.8-0.7
Total locomotion distance, hab. session 20.10.10.2-0.20.3-0.4-0.4
Locomotion velocity, hab. session 20.20.30.4-0.40.1-0.6-0.7
Novel to familiar place preference ratio1.71.82.0-1.3-1.4-1.3-1.3
Novelty place preference1.81.92.8-1.4-1.7-1.2-1.1
Time in novel zone, NPP test1.01.01.9-1.0-1.4-0.8-0.6
Total zone transitions, NPP test0.20.20.3-0.00.5-0.6-0.5
Total locomotion distance, NPP test0.20.30.80.50.90.10.2
Locomotion velocity, NPP test0.10.20.3-0.10.4-0.6-0.5
Pavlov. Cond. lever latency3.95.05.9-2.4-2.3-2.2-2.0
Pavlov. Cond. magazine entry latency9.011.613.13.52.93.63.6
Pavlov. Cond. change in total contacts6.46.810.42.31.43.23.0
Pavlov. Cond. index score8.410.811.83.42.93.43.3
Pavlov. Cond. latency score6.98.89.83.12.83.03.0
Pavlov. Cond. lever contacts3.54.15.22.32.21.91.7
Pavlov. Cond. magazine entry number10.813.516.6-3.6-2.8-4.0-4.1
Pavlov. Cond. intertrial magazine entries1.72.02.9-1.7-1.5-1.2-1.3
Pavlov. Cond. lever-magazine prob. diff.8.911.112.83.42.83.63.5
Pavlov. Cond. response bias8.19.912.53.12.43.53.5
Bone: apparent density2.23.64.12.01.62.01.9
Bone surface0.30.51.10.91.10.20.2
Bone volume0.81.32.61.41.60.50.6
Bone: connectivity density2.64.15.32.01.52.32.2
Bone: cortical apparent density3.64.79.31.30.73.02.7
Bone: cortical area0.00.10.20.20.00.10.4
Bone: cortical porosity0.50.50.80.90.90.50.4
Bone: cortical porosity0.40.40.80.80.90.30.4
Bone: cortical thickness0.40.71.40.2-0.11.11.2
Bone: cortical thickness2.53.05.51.20.82.32.1
Bone: cortical tissue density3.64.79.31.40.73.12.7
Bone: elastic displacement0.00.00.1-0.3-0.20.1-0.1
Bone: elastic work0.10.20.40.40.60.30.0
Bone: endosteal estimation0.91.94.7-0.30.2-2.2-1.6
Bone: endosteal perimeter0.71.33.0-0.4-0.1-1.7-1.5
Bone: final force1.01.72.41.51.50.71.3
Bone: final moment0.91.42.11.51.40.61.1
Bone: marrow area0.81.84.5-0.20.2-2.1-1.6
Bone: maximum diameter0.10.20.40.60.50.00.3
Bone: maximum force0.10.20.50.60.7-0.20.2
Bone: maximum moment0.10.20.30.50.5-0.40.1
Bone: minimum diameter0.20.31.0-0.2-0.0-1.0-0.4
Bone: periosteal estimation0.10.30.70.40.5-0.8-0.3
Bone: periosteal perimeter0.40.61.30.10.3-1.2-1.0
Bone: post-yield work1.01.42.5-0.9-0.8-1.6-1.3
Bone: stiffness0.10.20.20.50.4-0.30.4
Bone: tissue strength1.00.91.3-0.9-0.9-1.1-0.9
Bone: trabecular number5.28.18.93.02.62.92.9
Bone: trabecular spacing0.60.81.7-0.50.1-1.3-1.1
Bone: trabecular thickness0.10.10.20.50.40.3-0.1
Bone: trabecular tissue density0.81.12.7-1.2-1.6-0.1-0.0
Breakpoint value in progressive ratio session0.20.30.4-0.50.6-0.2-0.7
Distance traveled before self-admin0.20.20.50.50.7-0.2-0.1
Distance traveled after self-admin0.70.81.7-0.2-0.2-1.3-1.2
Delta time in closed arm before/after self-admin3.43.35.9-1.7-0.9-1.9-2.4
Delta time in open arm before/after self-admin0.00.00.00.0-0.10.10.1
Diff in mean of infusions in LGA sessions0.40.40.9-0.60.3-0.7-0.9
Extinction: sum of active levers before priming1.01.01.8-0.6-0.4-1.3-1.3
Active lever presses in extinction session 64.13.97.02.22.61.41.3
Delta distance traveled before/after self-admin1.41.41.7-1.2-1.1-1.3-1.2
Delta ambulatory time before/after self-admin0.60.61.2-0.4-0.7-1.1-0.8
Time in closed arm before self-admin1.11.32.71.0-0.21.11.6
Time in closed arm after self-admin1.11.22.6-1.1-1.6-0.8-0.5
Time in open arm before self-admin2.02.23.2-1.7-0.4-1.5-1.8
Time in open arm after self-admin0.40.50.8-0.8-0.1-0.6-0.9
Sum of active levers in priming session hrs 5-60.50.50.60.60.80.80.7
Time to tail flick, vehicle, before self-admin0.10.10.10.30.30.10.3
Time to tail flick, vehicle, after self-admin0.20.20.30.40.60.30.3
Time to tail flick, test, before self-admin1.31.22.4-0.9-0.7-1.5-1.2
Time to tail flick, test, after self-admin0.70.71.20.81.10.90.7
Delta time to tail flick, vehicle, before/after SA1.11.01.71.31.30.60.7
Delta time to tail flick, test, before/after SA3.22.94.81.21.32.21.9
Ambulatory time before self-admin0.10.10.10.20.3-0.3-0.3
Ambulatory time after self-admin1.21.43.00.10.0-1.7-1.6
Total heroin consumption2.73.36.71.82.61.31.1
Area under the delay curve0.20.20.30.4-0.10.60.5
Delay disc. indifference point, 0s delay0.91.01.80.80.51.31.1
Delay disc. indifference point, 16s delay0.40.40.9-0.2-0.90.70.5
Delay disc. indifference point, 2s delay1.41.52.21.11.11.31.5
Delay disc. indifference point, 24s delay0.20.20.6-0.2-0.8-0.20.0
Delay disc. indifference point, 4s delay0.50.50.70.60.60.90.9
Delay disc. indifference point, 8s delay0.10.10.20.5-0.10.30.4
Delay discount exponential model param0.10.10.1-0.20.2-0.4-0.3
Delay discount hyperbolic model param0.20.20.3-0.30.1-0.5-0.5
Fecal boli incidents, locomotor time 10.10.10.2-0.4-0.0-0.2-0.3
Change in fecal boli incidents, locomotor task0.10.10.2-0.4-0.30.10.1
Time >=10cm from walls, locomotor time 10.60.60.7-0.7-0.80.70.8
Bouts of movement, locomotor time 10.60.71.60.0-0.2-1.3-1.0
Total resting periods, locomotor time 10.91.02.5-0.3-0.2-1.6-1.2
Rest time, locomotor task time 10.30.30.70.90.6-0.2-0.1
Distance moved, locomotor task time 10.30.30.7-0.4-0.00.70.9
Vertical activity count, locomotor time 10.40.41.5-1.2-0.2-0.00.1
Time >=10cm from walls, locomotor time 21.21.33.30.00.31.31.8
Bouts of movement, locomotor time 20.10.10.20.1-0.50.1-0.0
Total resting periods, locomotor time 20.10.10.4-0.1-0.6-0.1-0.3
Rest time, locomotor task time 20.60.71.3-0.7-0.4-1.0-1.1
Distance moved, locomotor task time 20.20.20.5-0.20.10.40.7
Vertical activity count, locomotor time 20.30.31.0-1.0-0.4-0.2-0.1
Weight adjusted by age0.30.40.8-0.20.4-0.9-0.7
Seeking ratio, delayed vs. immediate footshock0.70.81.8-1.3-0.90.80.2
Locomotion in novel chamber5.26.410.11.71.73.13.2
Locomotion in novel chamber post-restriction2.12.53.91.82.01.11.1
Progressive ratio0.20.30.50.30.70.70.2
Food seeking constrained by brief footshock0.70.81.81.40.90.40.8
Seeking ratio, punishment vs. effort0.10.10.20.4-0.4-0.40.3
Run reversals in cocaine runway, females4.44.36.5-2.5-2.0-1.9-1.8
Run reversals in cocaine runway, males0.50.50.70.60.40.80.8
Latency to leave start box in cocaine runway1.41.62.5-1.5-0.8-1.0-1.6
Latency to leave start box in cocaine runway, F1.41.52.8-1.2-0.5-1.2-1.7
Latency to leave start box in cocaine runway, M0.20.20.6-0.2-0.30.80.3
Cd content in liver0.20.20.30.50.30.60.5
Co content in liver0.70.81.2-1.0-0.7-0.8-1.1
Cu content in liver0.10.10.2-0.5-0.40.1-0.2
Fe content in liver0.50.61.1-0.5-0.1-1.0-1.1
K content in liver1.21.21.81.00.81.21.4
Mg content in liver0.60.61.10.0-0.61.01.0
Mn content in liver1.41.62.70.90.41.61.7
Na content in liver1.01.02.01.21.40.60.6
Rb content in liver1.41.73.21.00.51.61.8
Se content in liver4.04.98.52.01.42.92.2
Sr content in liver0.10.10.2-0.4-0.40.2-0.0
Zn content in liver2.62.83.71.81.41.91.6