Nr2c1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 LHb alternative polyA ENSRNOT00000009578 0.2 0.11 5.6e-03 0.19 0.05 0.09 0.13 2.6e-05 2.9e-02 4.1e-03 4.9e-04
2 LHb alternative polyA ENSRNOT00000089228 0.32 0.15 1.8e-03 0.21 0.08 0.13 0.15 8.9e-06 6.8e-03 6.3e-04 1.9e-04
3 Liver gene expression ENSRNOG00000006983 0.04 0.02 1.7e-04 0.03 0.03 0.03 0.03 7.4e-04 7.0e-04 2.0e-04 8.5e-04

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail1.13.44.92.2-2.2-0.7
BMI without tail3.67.69.33.0-3.0-2.0
Body weight8.335.137.86.1-6.1-5.5
Epididymis fat weight3.06.99.23.0-3.0-1.5
Glucose0.00.00.1-0.10.1-0.3
Heart weight0.20.20.6-0.10.10.8
Left kidney weight2.88.08.32.9-2.9-2.7
Right kidney weight1.74.95.52.3-2.3-1.9
Tail length8.525.625.75.1-5.1-5.0
Length with tail11.943.644.56.7-6.7-6.5
Length without tail5.411.812.33.5-3.5-3.3
Liver weight, left1.01.72.41.6-1.6-0.3
Liver weight, right0.91.62.21.5-1.5-0.5
Parametrial fat weight0.61.23.40.2-0.21.8
Retroperitoneal fat weight3.411.315.74.0-4.0-1.6
Intraocular pressure1.31.82.7-1.61.60.4
Extensor digitorum longus weight0.10.40.5-0.70.7-0.4
Soleus weight0.00.00.0-0.20.20.2
Tibialis anterior weight0.61.92.3-1.51.51.1
Tibia length9.225.828.45.3-5.3-4.5
Number of licking bursts0.10.10.2-0.40.4-0.2
Food consumed during 24 hour testing period0.40.50.80.6-0.6-0.9
Times rat made contact with spout2.02.36.90.1-0.1-2.6
Mean time between licks in bursts0.40.60.80.9-0.9-0.1
Mean num. licks in bursts0.20.30.9-0.10.1-0.9
Std. dev. time between licks in bursts0.80.92.30.5-0.51.5
Water consumed over 24 hours0.60.71.6-0.50.5-1.3
Indifference point 0 sec0.10.10.2-0.40.40.1
Indifference point AUC0.30.41.0-0.30.3-1.0
Indifference point function ln k0.40.60.60.8-0.80.7
Indifference point function log k0.40.60.60.8-0.80.7
Delay discounting total patch changes 0 sec0.10.10.1-0.40.40.1
Delay discounting total patch changes 12 sec0.60.92.60.1-0.1-1.6
Delay discounting total patch changes 18 sec0.70.91.9-0.60.6-1.4
Delay discounting total patch changes 24 sec0.70.92.70.2-0.2-1.6
Delay discounting total patch changes 6 sec0.10.20.3-0.60.6-0.2
Delay discounting time to switch 0 sec0.30.50.7-0.90.9-0.0
Delay discounting water rate 0 sec1.93.14.12.0-2.0-1.0
Delay discounting water rate 12 sec1.32.03.61.1-1.1-1.9
Delay discounting water rate 18 sec0.00.00.10.1-0.10.3
Delay discounting water rate 24 sec3.54.86.22.5-2.5-1.4
Delay discounting water rate 6 sec5.27.59.53.1-3.1-1.9
Locomotor activity4.57.18.62.9-2.9-2.0
Locomotor testing distance1.83.04.02.0-2.0-1.0
Locomotor testing rearing0.20.30.50.5-0.5-0.7
Light reinforcement 11.22.23.11.8-1.8-0.5
Light reinforcement 20.50.60.7-0.80.80.8
Reaction time number correct0.20.20.30.5-0.50.3
Reaction time mean minus median0.50.60.7-0.80.80.7
Reaction time mean minus median AUC0.60.81.1-1.11.10.4
Reaction time num false alarms1.41.92.7-1.61.60.6
Reaction time num false alarms AUC1.92.73.4-1.81.81.1
Reaction time trials correct on left0.20.20.30.5-0.50.3
Reaction time trials on left0.10.20.20.5-0.50.3
Reaction time mean0.20.20.3-0.60.60.3
Reaction time mean AUC0.20.20.4-0.60.6-0.0
Median of all reaction times0.00.00.1-0.30.30.0
Reaction time omissions2.43.24.5-1.61.62.1
Reaction time false alarm rate2.12.94.0-2.02.00.9
Reaction time premature initiation rate0.10.10.20.3-0.30.4
Reaction time premature initiations0.20.20.40.6-0.60.1
Std. dev. reaction times1.01.31.6-1.31.30.9
Reaction time trials completed0.10.20.20.5-0.50.3
Reaction time trials AUC0.10.20.30.5-0.50.3
Social response proportion1.51.62.41.5-1.5-0.3
Social responses2.53.34.72.2-2.2-0.6
Social time0.70.91.8-0.70.7-1.3
Conditioned locomotion0.10.10.20.0-0.00.5
Cocaine response after cond. corrected0.40.50.6-0.80.8-0.5
Cocaine response after cond. not corrected0.20.30.5-0.40.4-0.7
Cocaine response before conditioning0.30.30.50.7-0.7-0.2
Saline control response0.40.51.20.4-0.4-1.1
Condit. Reinf. active minus inactive responses0.20.20.50.3-0.30.7
Condit. Reinf. active-inactive response ratio0.00.00.00.1-0.1-0.1
Condit. Reinf. active responses0.30.40.80.4-0.40.9
Condit. Reinf. inactive responses0.70.82.40.1-0.11.6
Condit. Reinf. lever presses0.20.30.30.5-0.50.5
Condit. Reinf. lever reinforcers received0.50.71.00.7-0.71.0
Pavlov. Cond. lever latency0.50.70.7-0.90.9-0.8
Pavlov. Cond. magazine entry latency0.80.91.01.0-1.0-0.7
Pavlov. Cond. change in total contacts2.83.95.82.4-2.4-0.5
Pavlov. Cond. index score1.41.82.71.6-1.6-0.3
Pavlov. Cond. latency score1.11.42.01.4-1.4-0.2
Pavlov. Cond. lever contacts0.50.70.90.9-0.90.7
Pavlov. Cond. magazine entry number1.41.72.5-1.61.60.5
Pavlov. Cond. intertrial magazine entries0.00.10.10.3-0.30.2
Pavlov. Cond. lever-magazine prob. diff.1.41.92.61.6-1.6-0.6
Pavlov. Cond. response bias0.81.11.61.3-1.30.1
Conditioned reinforcement - actives0.70.72.0-0.10.1-1.4
Conditioned reinforcement - inactives0.70.81.0-0.80.8-1.0
Conditioned locomotion1.11.33.40.6-0.6-1.8
Intermittent access intake day 1-15 change0.90.92.3-0.40.4-1.5
Intermittent access intake escalation1.11.12.8-0.60.6-1.7
Intermittent access intake escalation 20.30.30.5-0.40.4-0.7
Intermitt. access day 1 inactive lever presses5.86.39.0-3.03.01.0
Intermitt. access day 15 inactive lever presses0.40.51.40.1-0.11.2
Intermitt. access escalation Index0.20.20.4-0.10.10.7
Intermittent access day 1 total infusions2.42.72.81.7-1.7-1.5
Intermittent access day 15 total infusions2.63.05.21.4-1.4-2.3
Intermittent access terminal intake (last 3 days)3.43.73.81.9-1.9-2.0
Intermittent access total infusions2.83.03.61.7-1.7-1.9
Intermittent access day 1 locomotion0.80.81.30.7-0.7-1.2
Intermittent access day 15 total locomotion2.22.46.20.7-0.7-2.5
Intermittent access total locomotion1.31.53.40.8-0.8-1.8
Intermittent access standard deviation1.81.95.60.3-0.3-2.4
Cocaine induced anxiety1.21.33.90.3-0.32.0
Post-drug Anxiety0.60.72.00.2-0.21.4
Baseline Anxiety0.50.51.5-0.20.2-1.2
Lifetime Intake3.23.64.32.1-2.1-1.4
Incentive Sensitization - Responses1.61.64.50.4-0.4-2.1
Incentive Sensitization - Breakpoint1.51.54.10.4-0.4-2.0
Progressive ratio test 1 active lever presses4.14.27.61.6-1.6-2.8
Progressive ratio test 1 breakpoint4.14.26.91.7-1.7-2.6
Progressive ratio test 1 inactive lever presses0.10.10.2-0.20.2-0.4
Progressive ratio test 2 active lever presses2.42.54.51.2-1.2-2.1
Progressive ratio test 2 breakpoint2.62.95.71.2-1.2-2.4
Progressive ratio test 2 inactive lever presses0.20.20.70.1-0.1-0.8
Total sessions with >9 infusions2.42.63.51.9-1.9-1.0
Short access day 1 total inactive lever presses1.21.32.0-1.41.4-0.0
Short access day 10 total inactive lever presses0.91.02.7-0.50.51.6
Short access day 1 total infusions2.12.22.91.7-1.7-0.9
Short access day 10 total infusions3.33.64.22.0-2.0-1.6
Short access total infusions3.94.35.62.4-2.4-1.3
Short access day 1 locomotion1.71.82.51.2-1.2-1.6
Short access day 10 total locomotion1.51.72.4-1.61.6-0.3
Short access total locomotion1.01.02.9-0.30.3-1.7
Compulsive drug intake0.60.61.30.4-0.41.2
One hour access (0.3 mA shock)3.33.94.31.9-1.9-2.1
One hour access (shock baseline)2.73.16.21.3-1.3-2.5
Number of responses in last shaping day0.50.51.20.4-0.4-1.1
Context. condit. distance diff. score1.01.21.81.4-1.4-0.3
Locomotion velocity, session 10.20.30.7-0.20.20.8
Locomotion distance, session 10.10.10.10.4-0.40.2
Locomotion velocity, session 20.00.00.0-0.10.10.2
Locomotion distance, session 20.20.20.20.5-0.5-0.4
Locomotion velocity, session 31.01.21.81.3-1.30.4
Locomotion distance, session 31.21.32.01.4-1.4-0.1
Stereotopy head waving bouts, day 31.41.72.4-1.51.50.5
Stereotopy head waving duration, day 30.60.71.0-1.01.00.3
Locomotion velocity, session 71.92.13.11.8-1.80.3
Locomotion distance, session 70.60.81.11.1-1.10.2
Stereotopy head waving bouts, day 70.00.00.1-0.20.20.0
Stereotopy head waving duration, day 70.20.20.3-0.50.50.2
Locomotion velocity, session 80.91.11.61.3-1.3-0.5
Locomotion distance, session 83.75.67.72.8-2.8-1.1
Degree of sensitization distance0.20.20.3-0.50.50.3
Degree of sensitization stereotypy0.20.30.3-0.50.50.6
Condit. Reinf. active minus inactive responses0.50.61.5-0.30.31.2
Condit. Reinf. active-inactive response ratio1.11.21.4-1.01.01.2
Condit. Reinf. active responses1.31.61.8-1.21.21.4
Condit. Reinf. inactive responses1.21.41.6-1.31.30.9
Incentive salience index mean0.00.10.20.1-0.10.4
Condit. Reinf. lever presses0.20.30.40.7-0.7-0.2
Time in familiar zone, hab. session 10.20.20.30.3-0.30.6
Time in novel zone, hab. session 11.00.91.2-1.11.10.7
Total zone transitions, hab. session 12.94.15.32.3-2.3-1.3
Total locomotion distance, hab. session 13.55.16.92.6-2.6-1.2
Locomotion velocity, hab. session 14.97.19.23.0-3.0-1.7
Time in familiar zone, hab. session 20.00.00.00.0-0.00.2
Time in novel zone, hab. session 20.40.40.8-0.40.40.9
Total zone transitions, hab. session 20.60.81.11.1-1.10.1
Total locomotion distance, hab. session 20.40.60.90.9-0.9-0.0
Locomotion velocity, hab. session 20.70.91.41.2-1.2-0.1
Novel to familiar place preference ratio0.50.50.70.8-0.8-0.4
Novelty place preference0.30.30.40.6-0.6-0.2
Time in novel zone, NPP test0.30.30.40.7-0.7-0.2
Total zone transitions, NPP test0.91.31.91.4-1.4-0.4
Total locomotion distance, NPP test1.01.41.91.4-1.4-0.7
Locomotion velocity, NPP test0.71.01.31.2-1.2-0.6
Pavlov. Cond. lever latency0.30.40.50.7-0.70.2
Pavlov. Cond. magazine entry latency0.20.20.60.1-0.10.8
Pavlov. Cond. change in total contacts0.30.30.4-0.70.7-0.0
Pavlov. Cond. index score0.10.10.1-0.20.20.4
Pavlov. Cond. latency score0.10.10.1-0.30.30.2
Pavlov. Cond. lever contacts0.10.20.50.0-0.0-0.7
Pavlov. Cond. magazine entry number0.20.20.5-0.20.2-0.7
Pavlov. Cond. intertrial magazine entries0.20.20.70.1-0.10.8
Pavlov. Cond. lever-magazine prob. diff.0.10.10.2-0.10.10.4
Pavlov. Cond. response bias0.00.00.00.1-0.10.0
Bone: apparent density0.10.10.2-0.40.4-0.2
Bone surface0.00.10.20.1-0.1-0.4
Bone volume0.10.10.20.3-0.3-0.5
Bone: connectivity density0.50.81.1-1.11.1-0.2
Bone: cortical apparent density1.51.92.91.7-1.7-0.2
Bone: cortical area0.71.11.60.9-0.9-1.2
Bone: cortical porosity0.50.50.8-0.90.9-0.2
Bone: cortical porosity0.20.20.3-0.50.5-0.2
Bone: cortical thickness0.50.82.00.5-0.5-1.4
Bone: cortical thickness0.60.71.0-1.01.00.4
Bone: cortical tissue density1.62.13.21.8-1.8-0.1
Bone: elastic displacement2.32.62.7-1.61.61.6
Bone: elastic work1.21.61.9-1.41.41.0
Bone: endosteal estimation0.40.81.9-0.50.51.4
Bone: endosteal perimeter0.40.91.31.1-1.1-0.4
Bone: final force0.00.00.0-0.10.10.1
Bone: final moment0.00.00.0-0.20.2-0.1
Bone: marrow area0.30.71.9-0.40.41.4
Bone: maximum diameter0.81.41.71.3-1.3-0.8
Bone: maximum force0.00.10.2-0.20.20.4
Bone: maximum moment0.00.10.1-0.30.30.3
Bone: minimum diameter2.54.75.82.4-2.4-1.5
Bone: periosteal estimation0.10.30.40.7-0.70.2
Bone: periosteal perimeter0.40.60.90.9-0.9-0.4
Bone: post-yield work0.10.10.2-0.40.4-0.1
Bone: stiffness0.20.30.40.6-0.6-0.2
Bone: tissue strength0.10.10.2-0.20.2-0.4
Bone: trabecular number0.50.81.3-1.11.10.1
Bone: trabecular spacing0.20.30.40.6-0.6-0.1
Bone: trabecular thickness0.20.20.30.4-0.4-0.5
Bone: trabecular tissue density0.30.40.40.7-0.70.5
Breakpoint value in progressive ratio session0.91.12.2-0.70.71.5
Distance traveled before self-admin0.30.30.40.6-0.6-0.3
Distance traveled after self-admin0.40.50.70.8-0.80.3
Delta time in closed arm before/after self-admin0.10.10.1-0.20.2-0.4
Delta time in open arm before/after self-admin0.90.91.7-0.70.71.3
Diff in mean of infusions in LGA sessions1.92.12.6-1.61.61.1
Extinction: sum of active levers before priming0.50.50.5-0.70.70.6
Active lever presses in extinction session 60.10.10.40.1-0.10.6
Delta distance traveled before/after self-admin0.00.00.0-0.10.10.1
Delta ambulatory time before/after self-admin0.40.40.8-0.50.50.9
Time in closed arm before self-admin1.11.31.71.3-1.3-0.7
Time in closed arm after self-admin0.50.50.70.9-0.9-0.2
Time in open arm before self-admin0.10.10.1-0.30.30.1
Time in open arm after self-admin0.60.71.0-0.70.71.0
Sum of active levers in priming session hrs 5-60.00.00.10.1-0.1-0.3
Time to tail flick, vehicle, before self-admin3.73.77.81.3-1.3-2.8
Time to tail flick, vehicle, after self-admin2.93.13.5-1.91.91.5
Time to tail flick, test, before self-admin0.30.30.40.7-0.70.0
Time to tail flick, test, after self-admin0.60.60.91.0-1.0-0.2
Delta time to tail flick, vehicle, before/after SA5.35.18.0-1.91.92.8
Delta time to tail flick, test, before/after SA0.10.10.10.3-0.3-0.2
Ambulatory time before self-admin0.20.20.30.3-0.3-0.5
Ambulatory time after self-admin1.01.11.71.3-1.30.2
Total heroin consumption0.70.81.20.8-0.81.1
Area under the delay curve0.20.30.80.0-0.00.9
Delay disc. indifference point, 0s delay0.30.30.7-0.40.40.8
Delay disc. indifference point, 16s delay0.30.30.7-0.20.20.8
Delay disc. indifference point, 2s delay0.80.91.41.2-1.2-0.1
Delay disc. indifference point, 24s delay1.31.21.81.4-1.40.0
Delay disc. indifference point, 4s delay0.10.10.2-0.40.40.2
Delay disc. indifference point, 8s delay0.70.81.6-0.60.61.3
Delay discount exponential model param0.20.20.5-0.20.2-0.7
Delay discount hyperbolic model param0.10.20.3-0.30.3-0.6
Fecal boli incidents, locomotor time 10.00.00.0-0.10.10.1
Change in fecal boli incidents, locomotor task0.40.41.10.2-0.21.0
Time >=10cm from walls, locomotor time 10.60.61.7-0.30.31.3
Bouts of movement, locomotor time 10.60.71.1-0.70.71.0
Total resting periods, locomotor time 10.60.71.0-0.70.71.0
Rest time, locomotor task time 11.11.21.8-1.01.01.3
Distance moved, locomotor task time 10.80.81.60.7-0.7-1.3
Vertical activity count, locomotor time 12.93.03.51.9-1.9-1.4
Time >=10cm from walls, locomotor time 20.10.10.1-0.30.30.3
Bouts of movement, locomotor time 20.20.20.30.5-0.50.4
Total resting periods, locomotor time 20.40.40.60.6-0.60.8
Rest time, locomotor task time 21.21.43.1-0.80.81.8
Distance moved, locomotor task time 20.50.61.70.2-0.2-1.3
Vertical activity count, locomotor time 22.42.75.51.1-1.1-2.3
Weight adjusted by age2.02.33.41.9-1.9-0.2
Seeking ratio, delayed vs. immediate footshock0.50.50.8-0.90.90.1
Locomotion in novel chamber0.81.01.51.2-1.20.2
Locomotion in novel chamber post-restriction0.20.20.4-0.40.4-0.6
Progressive ratio0.81.02.1-0.60.61.4
Food seeking constrained by brief footshock0.70.92.50.3-0.3-1.6
Seeking ratio, punishment vs. effort0.81.02.60.4-0.4-1.6
Run reversals in cocaine runway, females0.20.20.20.4-0.4-0.5
Run reversals in cocaine runway, males0.00.00.00.1-0.1-0.0
Latency to leave start box in cocaine runway1.31.42.01.4-1.4-0.3
Latency to leave start box in cocaine runway, F0.20.20.20.5-0.50.4
Latency to leave start box in cocaine runway, M3.23.13.21.7-1.7-1.8
Cd content in liver0.10.10.10.3-0.30.1
Co content in liver2.12.43.41.4-1.4-1.9
Cu content in liver0.30.41.10.2-0.2-1.0
Fe content in liver0.20.20.30.5-0.50.1
K content in liver0.80.80.9-0.90.9-0.9
Mg content in liver0.10.10.2-0.50.5-0.0
Mn content in liver0.00.10.1-0.20.2-0.3
Na content in liver0.00.00.00.0-0.0-0.2
Rb content in liver1.41.72.5-1.61.60.1
Se content in liver0.60.81.01.0-1.00.6
Sr content in liver0.20.10.3-0.30.3-0.5
Zn content in liver0.40.50.50.7-0.7-0.6