Ube2z

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 BLA gene expression ENSRNOG00000006868 0.06 0.05 2.3e-03 0.02 0.03 0.03 0.02 2.9e-02 1.4e-02 7.6e-03 3.4e-02
2 Liver gene expression ENSRNOG00000006868 0.04 0.04 6.6e-05 0.03 0.01 0.03 0.01 2.6e-04 1.3e-02 2.7e-04 1.4e-02
3 Liver mRNA stability ENSRNOG00000006868 0.03 0.02 3.7e-05 0.03 0.03 0.03 0.02 4.6e-04 3.5e-04 1.4e-04 2.1e-03
4 PL gene expression ENSRNOG00000006868 0.22 0.16 1.3e-03 0.01 0.01 0.01 0.01 4.5e-02 9.2e-02 1.1e-01 3.4e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail14.045.568.3-5.68.37.7-4.7
BMI without tail0.71.53.1-0.91.81.5-0.2
Body weight0.93.74.1-2.02.02.0-1.7
Epididymis fat weight0.10.20.6-0.10.80.4-0.1
Glucose1.21.92.7-1.51.21.0-1.6
Heart weight1.42.03.1-1.51.81.2-1.1
Left kidney weight0.10.20.5-0.6-0.0-0.0-0.7
Right kidney weight0.82.23.6-1.80.91.0-1.9
Tail length13.139.655.95.2-7.5-7.34.8
Length with tail5.620.735.13.1-5.9-5.62.6
Length without tail0.20.30.9-0.7-0.2-0.1-0.9
Liver weight, left0.71.11.60.8-1.1-1.30.9
Liver weight, right0.20.40.90.1-0.7-1.0-0.0
Parametrial fat weight0.30.50.90.7-0.5-0.51.0
Retroperitoneal fat weight0.10.40.6-0.70.70.8-0.5
Intraocular pressure1.31.82.11.4-1.3-1.41.2
Extensor digitorum longus weight0.93.63.8-1.91.81.9-2.0
Soleus weight1.74.95.9-2.42.12.2-2.1
Tibialis anterior weight0.10.40.80.7-0.7-0.30.9
Tibia length0.72.02.7-1.51.31.2-1.6
Number of licking bursts1.41.62.21.5-0.8-1.21.5
Food consumed during 24 hour testing period1.92.32.81.5-1.7-1.61.3
Times rat made contact with spout0.50.60.80.9-0.6-0.90.8
Mean time between licks in bursts1.11.52.1-1.01.41.0-1.4
Mean num. licks in bursts0.30.40.8-0.80.20.3-0.9
Std. dev. time between licks in bursts0.60.80.8-0.90.80.9-0.9
Water consumed over 24 hours0.10.10.10.3-0.3-0.40.1
Indifference point 0 sec1.11.82.5-1.60.91.4-1.4
Indifference point AUC0.10.10.20.2-0.5-0.20.1
Indifference point function ln k0.00.00.10.2-0.2-0.10.2
Indifference point function log k0.00.00.10.2-0.2-0.10.2
Delay discounting total patch changes 0 sec1.32.12.9-1.71.11.5-1.5
Delay discounting total patch changes 12 sec0.00.00.0-0.1-0.00.0-0.1
Delay discounting total patch changes 18 sec1.92.52.9-1.71.41.6-1.6
Delay discounting total patch changes 24 sec0.91.11.6-1.30.71.2-1.0
Delay discounting total patch changes 6 sec0.81.21.6-1.20.91.2-1.0
Delay discounting time to switch 0 sec0.10.20.30.4-0.4-0.40.5
Delay discounting water rate 0 sec2.03.13.6-1.71.81.9-1.6
Delay discounting water rate 12 sec0.71.01.3-1.00.91.0-1.1
Delay discounting water rate 18 sec0.00.00.10.10.30.2-0.1
Delay discounting water rate 24 sec1.42.02.5-1.21.61.5-1.3
Delay discounting water rate 6 sec0.00.10.10.20.10.40.3
Locomotor activity0.10.10.20.30.40.40.5
Locomotor testing distance0.10.20.30.40.50.50.6
Locomotor testing rearing0.20.30.80.6-0.00.10.9
Light reinforcement 10.10.10.40.2-0.10.10.7
Light reinforcement 20.60.71.00.8-0.9-0.81.0
Reaction time number correct1.42.02.9-1.21.41.3-1.7
Reaction time mean minus median1.62.03.31.0-1.8-1.61.1
Reaction time mean minus median AUC2.22.83.61.4-1.9-1.91.5
Reaction time num false alarms1.01.41.61.1-1.3-0.91.3
Reaction time num false alarms AUC1.11.51.91.2-1.4-1.01.3
Reaction time trials correct on left1.42.02.9-1.21.41.3-1.7
Reaction time trials on left1.31.82.8-1.11.31.3-1.7
Reaction time mean0.60.81.30.5-1.0-1.10.8
Reaction time mean AUC0.70.91.50.6-1.0-1.20.9
Median of all reaction times0.10.20.40.1-0.4-0.60.5
Reaction time omissions1.01.31.61.1-1.3-1.21.0
Reaction time false alarm rate2.02.83.41.6-1.8-1.41.9
Reaction time premature initiation rate0.30.40.60.8-0.5-0.70.5
Reaction time premature initiations0.00.00.20.20.0-0.1-0.4
Std. dev. reaction times1.31.72.80.8-1.7-1.61.0
Reaction time trials completed1.31.82.8-1.11.31.3-1.7
Reaction time trials AUC1.31.82.7-1.11.31.3-1.6
Social response proportion1.82.02.31.3-1.5-1.41.4
Social responses0.20.20.40.6-0.30.10.7
Social time0.60.81.71.30.30.31.1
Conditioned locomotion1.41.62.4-0.91.61.3-1.2
Cocaine response after cond. corrected5.05.68.1-2.02.92.7-1.8
Cocaine response after cond. not corrected2.93.24.7-1.42.22.1-1.3
Cocaine response before conditioning2.32.83.81.5-1.9-1.71.4
Saline control response0.30.41.01.00.7-0.00.6
Condit. Reinf. active minus inactive responses0.30.40.90.7-0.3-0.50.9
Condit. Reinf. active-inactive response ratio0.90.92.11.2-0.2-0.51.5
Condit. Reinf. active responses0.10.20.30.3-0.3-0.40.6
Condit. Reinf. inactive responses0.10.10.2-0.4-0.1-0.0-0.4
Condit. Reinf. lever presses0.40.51.30.3-1.1-0.80.2
Condit. Reinf. lever reinforcers received0.20.20.40.4-0.4-0.50.6
Pavlov. Cond. lever latency1.72.43.61.8-0.9-1.41.9
Pavlov. Cond. magazine entry latency0.40.51.0-0.1-1.0-0.8-0.4
Pavlov. Cond. change in total contacts0.60.81.5-1.10.10.6-1.2
Pavlov. Cond. index score0.70.91.8-1.20.20.5-1.3
Pavlov. Cond. latency score0.50.61.3-1.0-0.10.3-1.1
Pavlov. Cond. lever contacts1.11.52.2-1.40.81.1-1.5
Pavlov. Cond. magazine entry number0.50.71.61.00.2-0.01.3
Pavlov. Cond. intertrial magazine entries2.22.84.02.0-1.2-1.42.0
Pavlov. Cond. lever-magazine prob. diff.0.91.12.1-1.30.30.7-1.5
Pavlov. Cond. response bias0.91.32.2-1.40.60.9-1.5
Conditioned reinforcement - actives0.30.20.50.5-0.1-0.50.7
Conditioned reinforcement - inactives0.20.20.30.60.2-0.40.4
Conditioned locomotion0.10.10.3-0.00.50.20.1
Intermittent access intake day 1-15 change0.40.40.6-0.60.70.8-0.4
Intermittent access intake escalation0.20.20.3-0.50.30.5-0.3
Intermittent access intake escalation 20.20.20.5-0.40.50.7-0.1
Intermitt. access day 1 inactive lever presses0.20.20.40.40.20.10.7
Intermitt. access day 15 inactive lever presses1.82.02.2-1.41.31.5-1.4
Intermitt. access escalation Index0.30.20.50.2-0.7-0.30.5
Intermittent access day 1 total infusions0.40.40.90.6-0.5-0.90.6
Intermittent access day 15 total infusions0.40.40.60.5-0.6-0.80.7
Intermittent access terminal intake (last 3 days)0.20.20.30.4-0.1-0.50.5
Intermittent access total infusions0.10.10.30.4-0.0-0.60.3
Intermittent access day 1 locomotion1.61.72.41.1-1.3-1.61.2
Intermittent access day 15 total locomotion0.40.40.70.5-0.5-0.80.7
Intermittent access total locomotion0.50.51.00.6-0.5-1.00.8
Intermittent access standard deviation0.60.71.0-0.81.00.8-0.6
Cocaine induced anxiety0.10.10.30.60.1-0.10.4
Post-drug Anxiety1.61.82.61.6-0.8-1.31.5
Baseline Anxiety0.00.00.0-0.2-0.00.1-0.2
Lifetime Intake0.20.20.40.4-0.4-0.60.3
Incentive Sensitization - Responses0.50.50.90.80.4-0.41.0
Incentive Sensitization - Breakpoint0.40.40.80.70.5-0.20.9
Progressive ratio test 1 active lever presses1.11.11.41.2-0.9-1.01.1
Progressive ratio test 1 breakpoint1.11.21.41.2-1.0-1.11.1
Progressive ratio test 1 inactive lever presses0.20.20.50.00.40.7-0.0
Progressive ratio test 2 active lever presses1.51.62.41.5-0.6-1.21.5
Progressive ratio test 2 breakpoint0.91.01.61.2-0.3-0.91.3
Progressive ratio test 2 inactive lever presses0.10.10.20.40.5-0.20.3
Total sessions with >9 infusions0.60.71.50.4-1.2-1.00.3
Short access day 1 total inactive lever presses0.20.20.50.5-0.7-0.50.1
Short access day 10 total inactive lever presses0.30.30.8-0.10.90.6-0.2
Short access day 1 total infusions0.10.20.4-0.1-0.6-0.2-0.5
Short access day 10 total infusions0.10.10.1-0.40.1-0.3-0.2
Short access total infusions0.10.10.4-0.4-0.1-0.1-0.6
Short access day 1 locomotion0.10.10.2-0.4-0.2-0.1-0.3
Short access day 10 total locomotion0.70.71.20.5-0.8-1.10.9
Short access total locomotion0.10.10.3-0.3-0.4-0.5-0.1
Compulsive drug intake6.06.07.22.5-2.7-2.32.2
One hour access (0.3 mA shock)0.81.01.71.3-0.5-0.91.1
One hour access (shock baseline)0.70.92.0-0.61.40.9-0.4
Number of responses in last shaping day2.02.02.7-1.21.51.4-1.6
Context. condit. distance diff. score0.70.91.2-0.80.91.1-0.8
Locomotion velocity, session 10.10.10.20.30.0-0.30.5
Locomotion distance, session 14.45.77.42.2-2.4-2.72.2
Locomotion velocity, session 20.70.81.50.5-1.2-1.20.3
Locomotion distance, session 26.28.99.83.0-2.9-3.12.9
Locomotion velocity, session 30.80.91.7-1.10.40.7-1.3
Locomotion distance, session 31.41.62.21.1-1.5-1.31.0
Stereotopy head waving bouts, day 34.35.15.7-2.32.22.4-2.1
Stereotopy head waving duration, day 33.44.24.6-2.12.02.0-2.0
Locomotion velocity, session 70.91.01.60.8-1.1-1.30.6
Locomotion distance, session 75.67.18.82.6-2.7-3.02.4
Stereotopy head waving bouts, day 70.40.40.6-0.80.50.7-0.6
Stereotopy head waving duration, day 70.30.40.6-0.80.40.6-0.8
Locomotion velocity, session 80.50.60.9-0.80.41.0-0.8
Locomotion distance, session 80.71.11.21.1-1.1-0.91.0
Degree of sensitization distance0.10.10.20.4-0.2-0.50.2
Degree of sensitization stereotypy0.30.30.40.6-0.5-0.40.6
Condit. Reinf. active minus inactive responses0.80.91.50.9-0.7-0.91.2
Condit. Reinf. active-inactive response ratio0.10.10.2-0.10.50.30.2
Condit. Reinf. active responses0.91.11.70.9-0.9-1.11.3
Condit. Reinf. inactive responses1.41.61.81.2-1.3-1.41.2
Incentive salience index mean1.82.23.11.5-1.2-1.41.8
Condit. Reinf. lever presses3.04.14.92.1-1.7-1.92.2
Time in familiar zone, hab. session 10.50.50.91.0-0.4-0.30.8
Time in novel zone, hab. session 13.33.25.0-2.21.31.6-1.9
Total zone transitions, hab. session 16.89.610.63.3-2.9-3.23.0
Total locomotion distance, hab. session 14.26.06.92.5-2.2-2.42.6
Locomotion velocity, hab. session 15.37.68.52.9-2.4-2.82.9
Time in familiar zone, hab. session 21.01.11.8-0.81.21.3-0.8
Time in novel zone, hab. session 20.20.20.30.3-0.4-0.60.4
Total zone transitions, hab. session 24.66.06.82.6-2.1-2.52.5
Total locomotion distance, hab. session 21.11.51.91.2-1.0-1.41.4
Locomotion velocity, hab. session 21.21.62.11.1-1.1-1.51.4
Novel to familiar place preference ratio0.40.40.90.7-0.4-0.50.9
Novelty place preference0.30.30.70.6-0.4-0.40.8
Time in novel zone, NPP test0.20.20.60.5-0.2-0.20.8
Total zone transitions, NPP test6.99.910.53.2-3.0-3.23.1
Total locomotion distance, NPP test2.63.64.11.9-1.6-2.02.0
Locomotion velocity, NPP test2.94.15.12.0-1.9-2.32.0
Pavlov. Cond. lever latency2.33.04.2-2.01.31.3-2.1
Pavlov. Cond. magazine entry latency0.40.51.30.8-0.4-0.21.1
Pavlov. Cond. change in total contacts4.54.86.12.4-1.9-1.92.5
Pavlov. Cond. index score1.62.13.91.6-0.9-0.92.0
Pavlov. Cond. latency score1.62.03.61.6-1.0-1.01.9
Pavlov. Cond. lever contacts3.74.45.82.4-1.8-1.82.4
Pavlov. Cond. magazine entry number0.91.22.4-1.20.70.6-1.6
Pavlov. Cond. intertrial magazine entries0.91.12.01.0-0.7-1.40.8
Pavlov. Cond. lever-magazine prob. diff.1.41.83.31.5-0.9-0.81.8
Pavlov. Cond. response bias1.51.83.11.6-1.0-0.81.8
Bone: apparent density1.01.62.0-1.41.41.3-0.9
Bone surface0.40.71.1-1.00.90.7-0.7
Bone volume1.11.82.8-1.71.41.1-1.2
Bone: connectivity density0.20.30.4-0.60.50.6-0.2
Bone: cortical apparent density4.15.47.32.2-2.7-2.51.8
Bone: cortical area0.50.70.9-0.71.00.7-1.0
Bone: cortical porosity0.30.40.6-0.60.80.5-0.4
Bone: cortical porosity0.20.20.4-0.40.70.4-0.3
Bone: cortical thickness0.30.50.9-0.50.60.6-1.0
Bone: cortical thickness0.40.41.20.4-1.1-0.50.4
Bone: cortical tissue density4.66.08.02.3-2.8-2.71.9
Bone: elastic displacement0.00.00.0-0.0-0.00.10.2
Bone: elastic work0.00.00.0-0.10.0-0.10.1
Bone: endosteal estimation0.00.10.1-0.30.30.0-0.1
Bone: endosteal perimeter0.10.30.4-0.50.60.4-0.4
Bone: final force0.10.20.7-0.20.80.2-0.1
Bone: final moment0.20.30.8-0.30.90.3-0.2
Bone: marrow area0.00.00.0-0.20.2-0.1-0.1
Bone: maximum diameter0.20.40.7-0.60.80.6-0.6
Bone: maximum force0.71.21.8-1.01.40.8-1.0
Bone: maximum moment0.81.31.8-1.21.30.9-1.2
Bone: minimum diameter0.10.20.4-0.50.4-0.0-0.6
Bone: periosteal estimation0.30.61.0-0.71.00.6-0.7
Bone: periosteal perimeter0.91.51.7-1.11.31.2-1.2
Bone: post-yield work0.91.21.8-1.11.00.9-1.3
Bone: stiffness0.10.10.4-0.20.60.1-0.3
Bone: tissue strength1.01.01.4-0.81.10.9-1.2
Bone: trabecular number0.10.10.2-0.50.40.20.2
Bone: trabecular spacing0.20.20.50.70.30.20.4
Bone: trabecular thickness4.65.57.9-2.81.71.9-2.8
Bone: trabecular tissue density0.10.10.30.1-0.4-0.1-0.5
Breakpoint value in progressive ratio session2.42.73.71.6-1.9-1.51.5
Distance traveled before self-admin3.53.75.12.2-1.5-1.72.3
Distance traveled after self-admin0.20.20.40.10.40.40.7
Delta time in closed arm before/after self-admin0.30.30.6-0.70.40.3-0.8
Delta time in open arm before/after self-admin0.00.00.10.1-0.3-0.10.0
Diff in mean of infusions in LGA sessions1.41.62.01.2-1.3-1.11.4
Extinction: sum of active levers before priming0.70.81.40.8-0.8-1.20.6
Active lever presses in extinction session 60.10.10.3-0.3-0.10.50.0
Delta distance traveled before/after self-admin2.72.83.3-1.81.71.8-1.5
Delta ambulatory time before/after self-admin2.93.23.6-1.91.91.9-1.4
Time in closed arm before self-admin3.13.54.7-1.82.21.7-1.7
Time in closed arm after self-admin4.24.45.1-2.22.31.7-2.2
Time in open arm before self-admin0.70.71.21.1-0.7-0.70.8
Time in open arm after self-admin0.70.81.31.2-0.9-0.60.8
Sum of active levers in priming session hrs 5-64.54.45.91.9-2.4-2.21.9
Time to tail flick, vehicle, before self-admin1.01.01.41.0-1.2-0.81.0
Time to tail flick, vehicle, after self-admin0.80.81.0-1.01.00.7-0.9
Time to tail flick, test, before self-admin1.21.21.7-1.30.71.0-1.2
Time to tail flick, test, after self-admin0.80.91.1-1.10.60.9-1.1
Delta time to tail flick, vehicle, before/after SA2.82.73.5-1.61.91.5-1.6
Delta time to tail flick, test, before/after SA0.50.50.50.7-0.7-0.60.7
Ambulatory time before self-admin2.52.63.71.9-1.1-1.41.9
Ambulatory time after self-admin0.20.30.5-0.30.70.60.3
Total heroin consumption0.50.60.80.9-0.8-0.40.9
Area under the delay curve0.00.00.10.0-0.3-0.2-0.1
Delay disc. indifference point, 0s delay0.10.10.10.2-0.1-0.3-0.3
Delay disc. indifference point, 16s delay1.11.11.3-1.10.91.1-1.1
Delay disc. indifference point, 2s delay0.10.10.40.1-0.4-0.6-0.2
Delay disc. indifference point, 24s delay0.60.60.60.7-0.8-0.70.8
Delay disc. indifference point, 4s delay0.90.91.80.6-1.3-1.20.2
Delay disc. indifference point, 8s delay0.10.10.30.2-0.5-0.40.2
Delay discount exponential model param0.10.10.2-0.10.40.30.0
Delay discount hyperbolic model param0.10.10.3-0.20.50.50.0
Fecal boli incidents, locomotor time 13.53.84.6-2.21.82.1-1.7
Change in fecal boli incidents, locomotor task1.91.82.41.4-1.3-1.51.1
Time >=10cm from walls, locomotor time 10.50.51.01.0-0.0-0.30.9
Bouts of movement, locomotor time 10.50.50.9-0.80.40.5-0.9
Total resting periods, locomotor time 10.91.01.5-1.10.70.9-1.2
Rest time, locomotor task time 10.10.20.4-0.50.10.2-0.6
Distance moved, locomotor task time 12.42.63.61.8-1.2-1.51.9
Vertical activity count, locomotor time 10.80.81.41.2-0.2-0.61.2
Time >=10cm from walls, locomotor time 20.60.71.11.1-0.5-0.61.0
Bouts of movement, locomotor time 20.00.00.1-0.00.30.00.0
Total resting periods, locomotor time 20.00.10.20.10.40.00.1
Rest time, locomotor task time 20.40.40.70.6-0.8-0.70.3
Distance moved, locomotor task time 20.10.10.20.0-0.5-0.30.2
Vertical activity count, locomotor time 20.10.10.10.2-0.1-0.30.3
Weight adjusted by age0.10.10.40.1-0.6-0.20.0
Seeking ratio, delayed vs. immediate footshock1.82.02.5-1.41.61.3-1.4
Locomotion in novel chamber0.40.50.80.9-0.1-0.50.9
Locomotion in novel chamber post-restriction0.91.13.4-0.41.80.6-0.7
Progressive ratio0.10.10.20.50.3-0.10.2
Food seeking constrained by brief footshock0.00.10.1-0.00.10.30.4
Seeking ratio, punishment vs. effort0.20.20.60.1-0.8-0.40.4
Run reversals in cocaine runway, females0.10.10.2-0.0-0.4-0.3-0.0
Run reversals in cocaine runway, males0.70.61.6-0.01.30.9-0.5
Latency to leave start box in cocaine runway6.16.78.2-2.92.62.3-2.6
Latency to leave start box in cocaine runway, F9.410.312.1-3.53.22.8-3.3
Latency to leave start box in cocaine runway, M0.10.10.1-0.40.40.20.1
Cd content in liver1.21.32.61.6-0.0-0.61.5
Co content in liver0.10.20.30.50.40.00.5
Cu content in liver9.211.112.73.2-3.0-3.63.6
Fe content in liver2.02.43.11.6-1.2-1.81.5
K content in liver0.30.30.80.1-0.4-0.90.3
Mg content in liver2.02.03.81.2-1.3-1.91.2
Mn content in liver3.43.85.11.8-2.3-2.01.7
Na content in liver0.30.30.7-0.1-0.6-0.80.3
Rb content in liver0.30.40.80.7-0.3-0.50.9
Se content in liver0.10.10.4-0.10.60.3-0.1
Sr content in liver0.50.50.80.5-0.9-0.9-0.0
Zn content in liver0.40.40.80.70.0-0.60.9