Slc6a1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 BLA gene expression ENSRNOG00000006527 0.09 0.05 1.5e-05 0.09 0.07 0.06 0.07 2.1e-05 1.1e-04 4.3e-04 1.8e-04
2 Brain gene expression ENSRNOG00000006527 0.12 0.05 3.9e-14 0.16 0.16 0.16 0.16 2.8e-14 2.3e-14 2.1e-14 7.9e-15
3 NAcc gene expression ENSRNOG00000006527 0.04 0.02 3.1e-03 0 0.02 0 0.01 2.5e-01 1.8e-02 1.6e-01 7.8e-02
4 PL gene expression ENSRNOG00000006527 0.06 0.03 2.7e-05 0.05 0.06 0.06 0.06 2.1e-04 3.3e-05 1.1e-05 1.5e-05

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail1.03.23.71.81.61.91.9
BMI without tail0.20.31.10.40.01.10.2
Body weight0.93.84.72.21.81.92.0
Epididymis fat weight0.10.30.90.90.1-0.30.4
Glucose2.94.46.32.51.81.72.3
Heart weight0.20.30.50.40.30.70.7
Left kidney weight2.05.77.8-2.2-2.8-2.0-2.5
Right kidney weight2.26.49.1-1.8-3.0-2.5-2.6
Tail length0.10.30.7-0.2-0.7-0.2-0.8
Length with tail0.00.10.50.70.10.10.0
Length without tail0.10.20.50.3-0.1-0.7-0.1
Liver weight, left0.10.20.40.5-0.5-0.6-0.2
Liver weight, right0.61.01.7-0.6-1.3-1.2-0.8
Parametrial fat weight0.51.02.71.70.70.10.9
Retroperitoneal fat weight0.10.30.9-0.2-0.3-1.0-0.4
Intraocular pressure0.20.20.60.8-0.00.00.5
Extensor digitorum longus weight5.622.529.54.04.75.44.8
Soleus weight1.02.83.71.11.91.91.7
Tibialis anterior weight0.62.05.52.30.60.31.5
Tibia length0.31.01.9-0.6-1.0-1.4-0.8
Number of licking bursts0.20.20.30.6-0.6-0.1-0.3
Food consumed during 24 hour testing period0.40.50.90.5-0.9-0.8-0.5
Times rat made contact with spout0.10.10.10.2-0.3-0.1-0.4
Mean time between licks in bursts0.81.11.71.30.80.91.1
Mean num. licks in bursts0.20.20.8-0.90.1-0.3-0.3
Std. dev. time between licks in bursts0.10.20.4-0.60.20.4-0.0
Water consumed over 24 hours0.00.00.00.20.10.20.0
Indifference point 0 sec0.20.30.60.40.80.30.7
Indifference point AUC2.83.34.4-1.4-2.1-1.9-1.7
Indifference point function ln k2.83.95.61.42.22.41.8
Indifference point function log k2.83.95.61.42.22.41.8
Delay discounting total patch changes 0 sec0.30.50.80.50.90.60.8
Delay discounting total patch changes 12 sec0.50.71.0-0.8-0.6-1.0-0.8
Delay discounting total patch changes 18 sec1.11.42.4-0.6-1.4-1.6-1.0
Delay discounting total patch changes 24 sec0.20.30.8-0.2-0.5-0.9-0.3
Delay discounting total patch changes 6 sec0.71.01.50.91.10.81.2
Delay discounting time to switch 0 sec0.71.11.71.00.91.01.3
Delay discounting water rate 0 sec0.50.82.4-1.6-0.1-0.2-0.9
Delay discounting water rate 12 sec0.10.20.30.50.40.40.3
Delay discounting water rate 18 sec0.30.30.8-0.20.90.70.3
Delay discounting water rate 24 sec0.00.10.2-0.2-0.1-0.1-0.4
Delay discounting water rate 6 sec0.00.10.2-0.2-0.00.0-0.5
Locomotor activity0.40.71.0-0.1-0.9-0.9-1.0
Locomotor testing distance0.71.22.0-0.8-1.0-1.1-1.4
Locomotor testing rearing2.13.25.8-0.3-2.0-2.4-1.8
Light reinforcement 10.20.30.7-0.4-0.4-0.9-0.6
Light reinforcement 20.10.10.30.50.1-0.30.1
Reaction time number correct0.91.21.61.01.31.01.2
Reaction time mean minus median0.70.91.7-1.3-0.7-0.9-0.8
Reaction time mean minus median AUC0.50.71.9-1.4-0.2-0.7-0.6
Reaction time num false alarms0.70.92.90.10.91.70.2
Reaction time num false alarms AUC0.50.72.20.10.71.5-0.1
Reaction time trials correct on left0.91.21.61.01.31.01.2
Reaction time trials on left0.71.01.40.81.20.91.1
Reaction time mean1.82.43.6-1.6-1.3-1.9-1.3
Reaction time mean AUC1.41.82.8-1.6-1.0-1.7-1.0
Median of all reaction times1.41.93.3-1.3-1.2-1.8-1.1
Reaction time omissions1.92.54.1-2.0-1.3-1.1-1.8
Reaction time false alarm rate0.40.51.0-0.8-0.30.6-1.0
Reaction time premature initiation rate1.72.22.6-1.4-1.5-1.4-1.6
Reaction time premature initiations0.81.11.3-0.9-1.1-1.1-1.1
Std. dev. reaction times2.33.15.9-2.4-1.2-1.4-1.8
Reaction time trials completed0.71.01.40.81.20.91.1
Reaction time trials AUC0.81.11.60.81.31.01.1
Social response proportion3.23.55.7-0.4-2.4-2.3-1.6
Social responses2.33.03.7-1.6-1.9-1.5-1.9
Social time0.91.21.9-0.7-1.4-1.1-1.1
Conditioned locomotion1.41.73.81.90.70.61.4
Cocaine response after cond. corrected3.13.54.7-1.4-2.2-1.5-2.2
Cocaine response after cond. not corrected6.67.39.1-2.1-3.0-2.6-3.0
Cocaine response before conditioning1.31.62.3-1.2-1.1-1.5-1.2
Saline control response2.53.37.70.1-2.0-2.8-1.2
Condit. Reinf. active minus inactive responses1.21.51.8-1.3-0.9-1.4-1.3
Condit. Reinf. active-inactive response ratio0.30.30.8-0.9-0.1-0.3-0.6
Condit. Reinf. active responses0.91.21.8-0.9-0.9-1.3-1.2
Condit. Reinf. inactive responses0.50.61.20.6-0.8-1.1-0.3
Condit. Reinf. lever presses0.30.40.9-0.2-0.9-0.6-0.7
Condit. Reinf. lever reinforcers received1.31.92.8-1.1-1.2-1.7-1.4
Pavlov. Cond. lever latency0.10.20.4-0.40.60.30.2
Pavlov. Cond. magazine entry latency0.50.60.9-0.6-0.9-0.5-0.9
Pavlov. Cond. change in total contacts1.01.32.0-0.9-1.3-0.9-1.4
Pavlov. Cond. index score0.40.50.9-0.5-1.0-0.6-0.8
Pavlov. Cond. latency score0.40.50.9-0.5-0.9-0.4-0.9
Pavlov. Cond. lever contacts0.00.10.20.1-0.4-0.0-0.2
Pavlov. Cond. magazine entry number1.21.52.11.41.10.91.5
Pavlov. Cond. intertrial magazine entries0.10.10.3-0.20.1-0.60.0
Pavlov. Cond. lever-magazine prob. diff.0.50.60.9-0.6-0.9-0.6-0.9
Pavlov. Cond. response bias0.00.00.10.1-0.20.0-0.2
Conditioned reinforcement - actives1.91.92.51.41.50.91.6
Conditioned reinforcement - inactives0.20.20.40.60.5-0.00.5
Conditioned locomotion1.11.31.81.31.40.41.2
Intermittent access intake day 1-15 change2.42.43.31.21.81.81.3
Intermittent access intake escalation1.31.32.00.71.41.40.9
Intermittent access intake escalation 22.42.44.10.91.82.01.2
Intermitt. access day 1 inactive lever presses0.90.91.3-0.7-1.1-0.8-1.2
Intermitt. access day 15 inactive lever presses0.60.60.8-0.7-0.9-0.6-0.8
Intermitt. access escalation Index0.10.10.30.2-0.60.0-0.2
Intermittent access day 1 total infusions1.01.11.71.31.00.41.2
Intermittent access day 15 total infusions3.33.74.51.92.11.52.0
Intermittent access terminal intake (last 3 days)4.95.46.22.22.52.12.5
Intermittent access total infusions2.83.14.42.11.71.02.0
Intermittent access day 1 locomotion1.92.02.61.51.41.01.6
Intermittent access day 15 total locomotion2.93.04.61.12.11.71.9
Intermittent access total locomotion2.83.14.41.32.11.42.1
Intermittent access standard deviation0.40.51.20.11.10.40.7
Cocaine induced anxiety0.30.40.5-0.7-0.7-0.4-0.6
Post-drug Anxiety3.53.85.3-2.3-1.9-1.7-1.9
Baseline Anxiety1.21.31.8-1.1-1.0-1.3-1.1
Lifetime Intake2.42.64.12.01.50.81.9
Incentive Sensitization - Responses1.11.11.81.40.80.81.2
Incentive Sensitization - Breakpoint1.31.32.01.40.90.91.2
Progressive ratio test 1 active lever presses0.70.81.91.40.4-0.11.0
Progressive ratio test 1 breakpoint1.01.12.41.60.70.21.1
Progressive ratio test 1 inactive lever presses0.00.00.0-0.0-0.1-0.1-0.0
Progressive ratio test 2 active lever presses1.61.72.51.61.20.81.5
Progressive ratio test 2 breakpoint1.51.62.51.61.10.71.5
Progressive ratio test 2 inactive lever presses0.10.20.30.50.30.10.5
Total sessions with >9 infusions1.01.11.91.4-0.6-1.40.4
Short access day 1 total inactive lever presses0.91.01.90.0-1.2-1.4-0.7
Short access day 10 total inactive lever presses0.80.91.8-1.3-0.7-0.4-1.1
Short access day 1 total infusions0.80.82.01.40.4-0.11.1
Short access day 10 total infusions1.31.42.01.31.20.71.4
Short access total infusions0.91.02.41.50.6-0.21.1
Short access day 1 locomotion4.64.95.72.42.31.72.4
Short access day 10 total locomotion0.00.00.0-0.00.0-0.2-0.1
Short access total locomotion0.20.20.50.70.3-0.40.4
Compulsive drug intake3.03.05.3-2.3-1.4-1.2-1.8
One hour access (0.3 mA shock)1.72.03.21.11.80.91.6
One hour access (shock baseline)6.47.49.23.02.72.03.0
Number of responses in last shaping day7.88.010.72.53.02.43.3
Context. condit. distance diff. score4.15.06.41.52.52.52.3
Locomotion velocity, session 10.20.20.7-0.4-0.1-0.1-0.9
Locomotion distance, session 10.40.51.0-0.3-0.8-0.4-1.0
Locomotion velocity, session 21.01.21.3-1.0-1.1-1.2-1.1
Locomotion distance, session 20.71.01.9-0.4-1.4-0.8-1.2
Locomotion velocity, session 30.80.91.8-0.4-1.1-1.3-0.7
Locomotion distance, session 30.50.51.20.4-0.9-1.1-0.3
Stereotopy head waving bouts, day 32.22.64.0-1.8-1.5-0.9-2.0
Stereotopy head waving duration, day 32.22.64.8-2.2-1.2-0.8-1.9
Locomotion velocity, session 70.10.20.40.4-0.1-0.70.1
Locomotion distance, session 71.52.03.41.81.20.41.7
Stereotopy head waving bouts, day 72.02.33.1-1.6-1.4-1.3-1.8
Stereotopy head waving duration, day 72.42.94.1-2.0-1.5-1.3-2.0
Locomotion velocity, session 80.20.30.70.20.40.80.3
Locomotion distance, session 81.82.74.01.21.62.01.6
Degree of sensitization distance1.61.62.80.81.71.11.3
Degree of sensitization stereotypy0.50.50.7-0.7-0.7-0.6-0.9
Condit. Reinf. active minus inactive responses2.52.85.2-1.2-1.5-2.3-1.4
Condit. Reinf. active-inactive response ratio4.14.46.5-1.7-2.1-2.6-1.9
Condit. Reinf. active responses0.60.71.8-0.4-0.6-1.3-0.6
Condit. Reinf. inactive responses1.11.32.31.51.00.91.1
Incentive salience index mean2.63.24.3-1.6-1.6-2.1-1.8
Condit. Reinf. lever presses1.62.22.9-1.7-1.4-1.1-1.7
Time in familiar zone, hab. session 10.10.10.3-0.60.2-0.00.1
Time in novel zone, hab. session 10.10.10.1-0.2-0.3-0.2-0.4
Total zone transitions, hab. session 11.11.52.90.2-1.7-1.4-1.1
Total locomotion distance, hab. session 10.30.40.90.2-0.9-0.7-0.6
Locomotion velocity, hab. session 10.40.61.30.1-1.1-0.7-0.8
Time in familiar zone, hab. session 20.00.00.1-0.00.30.30.2
Time in novel zone, hab. session 20.20.20.5-0.7-0.1-0.3-0.4
Total zone transitions, hab. session 21.01.32.70.3-1.6-1.3-1.0
Total locomotion distance, hab. session 21.21.62.8-0.3-1.7-1.4-1.2
Locomotion velocity, hab. session 21.21.63.0-0.1-1.7-1.4-1.2
Novel to familiar place preference ratio0.00.00.1-0.40.00.1-0.1
Novelty place preference0.10.10.5-0.70.10.3-0.2
Time in novel zone, NPP test0.10.10.3-0.50.30.40.0
Total zone transitions, NPP test0.60.81.4-0.9-0.8-0.7-1.2
Total locomotion distance, NPP test0.00.00.0-0.1-0.00.1-0.2
Locomotion velocity, NPP test0.10.10.3-0.4-0.3-0.1-0.5
Pavlov. Cond. lever latency0.10.20.4-0.40.40.6-0.1
Pavlov. Cond. magazine entry latency0.30.50.8-0.6-0.6-0.5-0.9
Pavlov. Cond. change in total contacts0.10.10.1-0.1-0.2-0.3-0.3
Pavlov. Cond. index score0.10.10.20.2-0.3-0.4-0.2
Pavlov. Cond. latency score0.10.20.3-0.0-0.5-0.6-0.3
Pavlov. Cond. lever contacts0.10.10.20.4-0.2-0.40.2
Pavlov. Cond. magazine entry number0.40.50.70.70.50.60.9
Pavlov. Cond. intertrial magazine entries0.40.50.90.80.50.01.0
Pavlov. Cond. lever-magazine prob. diff.0.10.10.20.2-0.3-0.4-0.2
Pavlov. Cond. response bias0.20.30.3-0.4-0.5-0.6-0.5
Bone: apparent density1.11.93.31.81.10.51.6
Bone surface0.20.40.80.90.5-0.20.6
Bone volume0.81.41.91.41.10.61.4
Bone: connectivity density0.50.81.41.20.90.51.0
Bone: cortical apparent density0.10.20.7-0.80.1-0.1-0.2
Bone: cortical area0.00.00.1-0.10.10.10.3
Bone: cortical porosity0.70.82.7-1.60.30.3-0.4
Bone: cortical porosity0.50.51.7-1.30.40.4-0.2
Bone: cortical thickness0.20.31.1-1.00.10.1-0.1
Bone: cortical thickness0.20.20.4-0.4-0.3-0.6-0.4
Bone: cortical tissue density0.10.20.6-0.80.1-0.1-0.2
Bone: elastic displacement0.60.71.91.4-0.2-0.50.8
Bone: elastic work0.81.12.51.60.30.41.2
Bone: endosteal estimation0.30.61.11.10.70.60.7
Bone: endosteal perimeter0.30.61.61.3-0.6-0.5-0.1
Bone: final force0.50.91.6-0.31.31.10.8
Bone: final moment0.71.12.0-0.11.41.21.1
Bone: marrow area0.20.51.11.00.60.50.6
Bone: maximum diameter0.20.30.60.2-0.8-0.6-0.4
Bone: maximum force1.22.03.30.51.81.61.4
Bone: maximum moment1.32.33.60.71.91.61.6
Bone: minimum diameter0.81.41.70.91.31.31.1
Bone: periosteal estimation0.20.30.40.70.50.50.6
Bone: periosteal perimeter0.40.71.10.2-1.1-1.0-0.6
Bone: post-yield work0.10.20.30.50.50.50.1
Bone: stiffness1.11.72.90.51.71.61.1
Bone: tissue strength0.20.20.50.7-0.1-0.40.2
Bone: trabecular number0.40.61.41.20.2-0.40.7
Bone: trabecular spacing0.10.10.2-0.30.00.3-0.4
Bone: trabecular thickness1.51.93.81.90.80.31.7
Bone: trabecular tissue density1.92.75.6-0.8-1.7-2.4-1.3
Breakpoint value in progressive ratio session6.77.59.73.12.62.62.7
Distance traveled before self-admin1.61.72.5-1.0-1.2-1.4-1.6
Distance traveled after self-admin1.31.51.9-1.3-1.0-1.4-1.1
Delta time in closed arm before/after self-admin0.60.61.2-0.41.10.90.3
Delta time in open arm before/after self-admin0.20.20.6-0.3-0.8-0.1-0.4
Diff in mean of infusions in LGA sessions1.11.33.41.90.50.21.2
Extinction: sum of active levers before priming0.20.20.30.60.50.30.3
Active lever presses in extinction session 64.64.45.71.52.42.32.1
Delta distance traveled before/after self-admin0.40.40.90.60.60.10.9
Delta ambulatory time before/after self-admin0.60.61.30.80.70.31.1
Time in closed arm before self-admin0.10.10.1-0.3-0.3-0.2-0.2
Time in closed arm after self-admin0.50.51.0-0.50.91.0-0.0
Time in open arm before self-admin0.90.91.30.91.10.81.0
Time in open arm after self-admin0.50.61.61.20.00.30.8
Sum of active levers in priming session hrs 5-61.51.41.71.31.30.91.3
Time to tail flick, vehicle, before self-admin2.82.94.2-1.3-1.7-2.0-1.6
Time to tail flick, vehicle, after self-admin0.20.20.70.10.20.8-0.0
Time to tail flick, test, before self-admin0.00.00.10.00.20.1-0.1
Time to tail flick, test, after self-admin0.40.40.6-0.5-0.7-0.5-0.8
Delta time to tail flick, vehicle, before/after SA0.10.10.5-0.10.30.70.0
Delta time to tail flick, test, before/after SA1.00.91.3-0.6-1.1-1.1-0.8
Ambulatory time before self-admin1.11.21.9-0.9-0.9-1.0-1.4
Ambulatory time after self-admin0.20.20.5-0.7-0.2-0.6-0.4
Total heroin consumption0.50.61.41.20.60.30.7
Area under the delay curve0.10.10.3-0.1-0.5-0.5-0.2
Delay disc. indifference point, 0s delay0.10.10.30.40.2-0.30.5
Delay disc. indifference point, 16s delay0.10.10.2-0.4-0.0-0.2-0.4
Delay disc. indifference point, 2s delay0.70.81.21.10.80.51.1
Delay disc. indifference point, 24s delay1.21.11.5-0.8-1.2-1.0-1.2
Delay disc. indifference point, 4s delay0.10.10.20.0-0.4-0.4-0.1
Delay disc. indifference point, 8s delay0.50.50.9-0.2-0.9-0.9-0.6
Delay discount exponential model param0.20.20.30.10.50.60.3
Delay discount hyperbolic model param0.10.10.2-0.00.40.40.1
Fecal boli incidents, locomotor time 10.10.10.30.3-0.5-0.4-0.3
Change in fecal boli incidents, locomotor task0.10.10.40.1-0.4-0.60.0
Time >=10cm from walls, locomotor time 15.65.67.3-1.8-2.4-2.4-2.7
Bouts of movement, locomotor time 10.50.61.00.50.90.61.0
Total resting periods, locomotor time 11.21.41.90.91.31.11.4
Rest time, locomotor task time 16.47.09.92.22.63.12.5
Distance moved, locomotor task time 15.45.98.0-2.4-2.1-2.8-2.4
Vertical activity count, locomotor time 12.32.43.6-1.5-1.3-1.9-1.5
Time >=10cm from walls, locomotor time 22.12.32.8-1.0-1.7-1.6-1.7
Bouts of movement, locomotor time 20.91.01.6-0.6-1.3-1.0-1.0
Total resting periods, locomotor time 21.21.21.9-0.7-1.4-1.1-1.1
Rest time, locomotor task time 20.50.50.80.80.50.90.6
Distance moved, locomotor task time 21.11.21.9-1.4-0.7-1.2-1.0
Vertical activity count, locomotor time 20.10.10.3-0.20.50.30.2
Weight adjusted by age0.10.10.30.1-0.4-0.6-0.3
Seeking ratio, delayed vs. immediate footshock0.60.71.41.20.50.90.6
Locomotion in novel chamber0.20.20.50.1-0.7-0.1-0.5
Locomotion in novel chamber post-restriction1.21.43.2-1.8-1.0-0.4-1.2
Progressive ratio1.01.12.41.60.40.91.1
Food seeking constrained by brief footshock5.56.711.13.32.21.82.8
Seeking ratio, punishment vs. effort0.20.20.7-0.10.80.10.3
Run reversals in cocaine runway, females1.51.52.4-0.5-1.5-1.2-1.4
Run reversals in cocaine runway, males0.40.40.8-0.9-0.4-0.1-0.9
Latency to leave start box in cocaine runway4.24.65.7-1.8-2.2-2.4-2.2
Latency to leave start box in cocaine runway, F2.52.73.2-1.6-1.7-1.8-1.5
Latency to leave start box in cocaine runway, M1.41.32.4-0.1-1.3-1.6-1.1
Cd content in liver2.02.24.10.61.72.01.2
Co content in liver3.44.14.42.11.92.02.0
Cu content in liver0.91.12.00.51.40.71.2
Fe content in liver0.60.71.5-0.21.20.90.7
K content in liver1.71.72.0-1.4-1.3-1.1-1.4
Mg content in liver1.11.11.9-1.4-0.9-0.9-1.0
Mn content in liver0.10.10.30.10.4-0.00.5
Na content in liver1.61.72.0-1.4-1.2-1.4-1.2
Rb content in liver0.10.20.4-0.50.2-0.60.2
Se content in liver0.91.12.2-0.41.51.20.7
Sr content in liver0.50.40.90.3-0.9-0.7-0.6
Zn content in liver0.10.20.3-0.5-0.20.1-0.6