Cd44

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression ENSRNOG00000006094 0.08 0.06 1.6e-07 0.07 0.09 0.06 0.09 6.4e-07 2.8e-08 1.1e-06 1.8e-08
2 Eye isoform ratio ENSRNOT00000009000 0.37 0.27 5.7e-03 0.04 0.11 -0.02 0.14 8.4e-02 8.7e-03 7.3e-01 3.2e-03
3 Liver gene expression ENSRNOG00000006094 0.09 0.15 7.3e-04 0.02 0.02 0.02 0.02 1.4e-03 2.3e-03 1.4e-03 2.0e-03
4 NAcc mRNA stability ENSRNOG00000006094 0.03 0.03 4.7e-03 0.01 0.02 0.02 -0 3.3e-02 1.6e-02 1.9e-02 3.6e-01

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail0.20.60.8-0.7-0.90.90.6
BMI without tail0.61.21.6-1.3-1.11.00.9
Body weight0.52.13.5-1.0-1.61.91.2
Epididymis fat weight0.82.02.5-1.3-1.41.61.3
Glucose2.23.33.7-1.9-1.71.71.9
Heart weight0.50.71.41.20.6-0.8-0.8
Left kidney weight0.61.82.9-0.9-1.41.71.2
Right kidney weight0.71.92.8-0.9-1.61.71.2
Tail length0.41.11.3-1.0-1.21.10.9
Length with tail0.20.81.7-0.4-0.91.30.7
Length without tail0.10.30.80.0-0.50.90.3
Liver weight, left0.20.30.4-0.5-0.50.50.6
Liver weight, right1.01.72.4-1.2-1.21.61.2
Parametrial fat weight1.12.22.9-1.5-1.71.31.4
Retroperitoneal fat weight8.528.131.0-4.9-5.65.55.2
Intraocular pressure0.00.10.2-0.4-0.1-0.00.3
Extensor digitorum longus weight0.41.51.61.21.2-1.1-1.3
Soleus weight1.54.45.12.32.1-1.9-2.0
Tibialis anterior weight3.311.311.73.43.4-3.2-3.4
Tibia length0.30.71.01.00.7-0.7-0.9
Number of licking bursts0.10.10.2-0.4-0.20.40.3
Food consumed during 24 hour testing period6.78.08.5-2.7-2.92.92.8
Times rat made contact with spout0.10.10.2-0.5-0.40.40.3
Mean time between licks in bursts1.01.41.71.31.3-1.0-1.0
Mean num. licks in bursts0.00.00.1-0.1-0.20.00.2
Std. dev. time between licks in bursts0.70.81.01.01.0-0.9-0.8
Water consumed over 24 hours0.00.10.2-0.2-0.20.40.1
Indifference point 0 sec0.20.30.40.50.6-0.6-0.4
Indifference point AUC1.11.31.71.11.1-1.3-1.1
Indifference point function ln k0.50.71.4-0.6-0.71.20.6
Indifference point function log k0.50.71.4-0.6-0.71.20.6
Delay discounting total patch changes 0 sec0.10.20.30.40.5-0.5-0.3
Delay discounting total patch changes 12 sec0.20.30.4-0.6-0.60.10.6
Delay discounting total patch changes 18 sec0.40.50.80.70.8-0.9-0.5
Delay discounting total patch changes 24 sec0.91.21.61.30.8-1.3-0.9
Delay discounting total patch changes 6 sec0.10.20.40.30.4-0.6-0.3
Delay discounting time to switch 0 sec0.00.10.1-0.3-0.1-0.20.3
Delay discounting water rate 0 sec0.10.10.20.50.30.1-0.4
Delay discounting water rate 12 sec0.40.60.90.90.7-0.6-0.9
Delay discounting water rate 18 sec0.50.71.2-0.5-1.01.10.7
Delay discounting water rate 24 sec0.50.61.11.10.7-0.4-0.9
Delay discounting water rate 6 sec0.10.10.30.50.2-0.0-0.4
Locomotor activity0.00.10.1-0.0-0.30.10.3
Locomotor testing distance1.11.82.2-1.1-1.51.31.5
Locomotor testing rearing0.10.20.4-0.3-0.50.30.6
Light reinforcement 10.20.40.5-0.7-0.70.50.5
Light reinforcement 20.00.00.0-0.1-0.10.1-0.1
Reaction time number correct0.00.00.1-0.1-0.2-0.2-0.1
Reaction time mean minus median0.50.70.8-0.9-0.90.60.9
Reaction time mean minus median AUC0.40.50.7-0.8-0.80.50.7
Reaction time num false alarms1.31.71.91.41.3-1.3-1.3
Reaction time num false alarms AUC2.12.93.21.81.7-1.6-1.7
Reaction time trials correct on left0.00.00.1-0.1-0.2-0.2-0.1
Reaction time trials on left0.00.00.1-0.0-0.1-0.4-0.2
Reaction time mean0.20.30.4-0.6-0.50.50.6
Reaction time mean AUC0.30.40.6-0.8-0.60.70.6
Median of all reaction times0.40.50.6-0.8-0.60.70.7
Reaction time omissions0.70.91.30.80.9-1.1-0.9
Reaction time false alarm rate2.43.43.92.01.9-1.6-1.8
Reaction time premature initiation rate0.20.30.60.70.4-0.6-0.3
Reaction time premature initiations0.10.20.40.50.2-0.7-0.3
Std. dev. reaction times0.00.00.0-0.2-0.20.10.2
Reaction time trials completed0.00.00.1-0.0-0.1-0.4-0.2
Reaction time trials AUC0.00.10.1-0.3-0.4-0.20.0
Social response proportion4.65.05.22.22.3-2.3-2.2
Social responses0.10.20.3-0.3-0.50.30.4
Social time1.82.43.11.31.5-1.8-1.6
Conditioned locomotion4.25.06.02.22.4-2.1-2.2
Cocaine response after cond. corrected2.12.32.51.41.6-1.5-1.6
Cocaine response after cond. not corrected0.50.60.60.80.7-0.8-0.8
Cocaine response before conditioning4.25.15.5-2.0-2.32.32.3
Saline control response0.70.91.3-0.8-1.10.81.0
Condit. Reinf. active minus inactive responses1.11.41.9-1.1-1.21.01.4
Condit. Reinf. active-inactive response ratio2.93.13.6-1.7-1.81.71.9
Condit. Reinf. active responses0.81.11.3-1.0-1.11.01.1
Condit. Reinf. inactive responses0.00.00.00.20.00.1-0.1
Condit. Reinf. lever presses0.50.60.8-0.7-0.90.70.9
Condit. Reinf. lever reinforcers received0.91.21.5-1.0-1.11.01.2
Pavlov. Cond. lever latency2.23.03.61.81.8-1.4-1.9
Pavlov. Cond. magazine entry latency1.11.31.5-1.2-1.21.01.1
Pavlov. Cond. change in total contacts0.91.21.5-1.1-1.21.01.1
Pavlov. Cond. index score1.92.52.8-1.6-1.71.41.7
Pavlov. Cond. latency score2.53.13.4-1.8-1.81.61.8
Pavlov. Cond. lever contacts2.23.13.6-1.7-1.91.61.9
Pavlov. Cond. magazine entry number0.60.70.80.90.9-0.8-0.9
Pavlov. Cond. intertrial magazine entries0.10.10.10.40.3-0.2-0.2
Pavlov. Cond. lever-magazine prob. diff.1.62.02.2-1.4-1.51.31.5
Pavlov. Cond. response bias1.82.52.9-1.6-1.61.31.7
Conditioned reinforcement - actives3.63.63.8-2.0-1.91.91.8
Conditioned reinforcement - inactives8.59.611.0-3.3-3.23.02.9
Conditioned locomotion3.03.64.7-1.8-1.92.21.7
Intermittent access intake day 1-15 change0.10.10.1-0.3-0.40.30.2
Intermittent access intake escalation0.40.30.4-0.6-0.60.70.5
Intermittent access intake escalation 22.22.12.7-1.4-1.51.61.3
Intermitt. access day 1 inactive lever presses0.10.10.10.30.2-0.1-0.3
Intermitt. access day 15 inactive lever presses3.23.54.8-1.8-1.92.21.5
Intermitt. access escalation Index0.00.00.1-0.2-0.1-0.10.2
Intermittent access day 1 total infusions4.04.54.7-2.0-2.12.22.2
Intermittent access day 15 total infusions4.95.55.9-2.3-2.32.42.3
Intermittent access terminal intake (last 3 days)6.16.77.2-2.6-2.62.72.5
Intermittent access total infusions5.96.57.2-2.6-2.52.72.4
Intermittent access day 1 locomotion1.91.92.3-1.3-1.31.51.4
Intermittent access day 15 total locomotion3.03.23.5-1.7-1.81.91.8
Intermittent access total locomotion3.03.44.1-1.8-1.82.01.7
Intermittent access standard deviation6.56.98.4-2.6-2.62.92.4
Cocaine induced anxiety0.10.20.3-0.3-0.40.50.2
Post-drug Anxiety0.00.00.10.10.10.2-0.3
Baseline Anxiety2.22.42.71.51.6-1.4-1.6
Lifetime Intake6.16.87.7-2.6-2.62.82.4
Incentive Sensitization - Responses1.41.42.4-1.5-1.21.10.9
Incentive Sensitization - Breakpoint1.31.32.2-1.5-1.11.00.8
Progressive ratio test 1 active lever presses3.73.84.3-1.9-2.11.91.9
Progressive ratio test 1 breakpoint3.33.43.9-1.7-2.01.81.8
Progressive ratio test 1 inactive lever presses2.22.42.5-1.4-1.61.61.6
Progressive ratio test 2 active lever presses2.93.13.7-1.9-1.71.81.5
Progressive ratio test 2 breakpoint3.43.84.6-2.1-2.01.91.7
Progressive ratio test 2 inactive lever presses3.54.14.9-2.1-2.12.21.7
Total sessions with >9 infusions1.81.92.2-1.3-1.31.51.4
Short access day 1 total inactive lever presses0.80.81.0-0.9-0.90.71.0
Short access day 10 total inactive lever presses0.20.20.3-0.5-0.50.50.3
Short access day 1 total infusions7.17.68.3-2.8-2.72.92.6
Short access day 10 total infusions3.43.74.4-1.8-2.02.11.8
Short access total infusions4.44.95.7-2.1-2.22.42.1
Short access day 1 locomotion3.23.44.3-1.5-1.82.11.9
Short access day 10 total locomotion4.34.75.7-2.1-2.12.42.0
Short access total locomotion3.43.54.3-1.7-1.82.11.8
Compulsive drug intake1.21.11.31.11.1-1.1-1.0
One hour access (0.3 mA shock)4.45.15.8-2.3-2.22.42.1
One hour access (shock baseline)6.37.37.7-2.8-2.72.82.5
Number of responses in last shaping day1.01.01.2-1.0-1.11.10.8
Context. condit. distance diff. score2.32.83.7-1.4-1.61.71.9
Locomotion velocity, session 10.00.00.1-0.1-0.0-0.3-0.1
Locomotion distance, session 10.10.10.2-0.3-0.3-0.00.4
Locomotion velocity, session 20.00.00.10.10.2-0.3-0.1
Locomotion distance, session 20.40.50.8-0.9-0.80.60.7
Locomotion velocity, session 30.20.20.3-0.6-0.40.30.5
Locomotion distance, session 30.30.40.5-0.7-0.60.60.6
Stereotopy head waving bouts, day 30.10.10.1-0.4-0.10.10.3
Stereotopy head waving duration, day 30.50.50.7-0.8-0.60.60.8
Locomotion velocity, session 70.20.30.4-0.6-0.40.30.6
Locomotion distance, session 70.20.30.30.50.5-0.5-0.4
Stereotopy head waving bouts, day 70.00.00.1-0.1-0.10.30.2
Stereotopy head waving duration, day 70.00.00.0-0.1-0.00.10.0
Locomotion velocity, session 80.81.01.3-1.1-0.90.81.1
Locomotion distance, session 83.24.85.6-2.1-2.22.12.4
Degree of sensitization distance0.60.60.80.90.8-0.7-0.6
Degree of sensitization stereotypy0.00.00.00.10.00.0-0.1
Condit. Reinf. active minus inactive responses0.91.01.1-1.0-0.91.11.1
Condit. Reinf. active-inactive response ratio1.71.92.7-1.2-1.31.71.3
Condit. Reinf. active responses0.30.30.4-0.7-0.40.60.6
Condit. Reinf. inactive responses0.30.40.60.30.7-0.8-0.5
Incentive salience index mean0.81.01.2-1.0-0.91.11.0
Condit. Reinf. lever presses0.60.80.9-0.9-0.91.00.8
Time in familiar zone, hab. session 10.40.40.50.70.6-0.7-0.6
Time in novel zone, hab. session 10.70.70.8-0.8-0.90.90.7
Total zone transitions, hab. session 12.53.64.1-1.8-2.01.82.0
Total locomotion distance, hab. session 11.11.62.1-1.1-1.21.21.4
Locomotion velocity, hab. session 10.71.11.5-0.9-1.01.01.2
Time in familiar zone, hab. session 20.10.10.20.0-0.20.4-0.0
Time in novel zone, hab. session 20.00.00.1-0.10.1-0.30.1
Total zone transitions, hab. session 22.12.73.1-1.6-1.81.61.7
Total locomotion distance, hab. session 20.10.10.2-0.1-0.30.30.4
Locomotion velocity, hab. session 20.00.10.1-0.0-0.20.20.3
Novel to familiar place preference ratio1.11.21.3-1.1-1.01.11.0
Novelty place preference1.11.11.3-1.2-1.01.11.0
Time in novel zone, NPP test0.70.81.0-1.0-0.80.80.8
Total zone transitions, NPP test0.40.61.10.70.7-1.0-0.6
Total locomotion distance, NPP test0.30.40.60.80.7-0.7-0.4
Locomotion velocity, NPP test0.20.30.40.70.5-0.6-0.2
Pavlov. Cond. lever latency0.50.70.80.90.8-0.7-0.8
Pavlov. Cond. magazine entry latency1.31.61.8-1.3-1.31.21.3
Pavlov. Cond. change in total contacts0.10.10.20.20.3-0.3-0.5
Pavlov. Cond. index score0.50.60.7-0.8-0.80.70.8
Pavlov. Cond. latency score0.50.70.8-0.9-0.90.70.8
Pavlov. Cond. lever contacts0.30.30.4-0.6-0.60.50.6
Pavlov. Cond. magazine entry number1.31.61.81.41.2-1.1-1.3
Pavlov. Cond. intertrial magazine entries0.00.10.1-0.00.2-0.4-0.2
Pavlov. Cond. lever-magazine prob. diff.0.40.50.6-0.8-0.70.60.7
Pavlov. Cond. response bias1.01.21.5-1.2-1.00.91.1
Bone: apparent density0.71.11.5-1.2-1.01.01.0
Bone surface0.50.81.0-0.9-0.91.00.8
Bone volume1.62.83.3-1.8-1.71.61.6
Bone: connectivity density0.40.70.9-0.9-0.80.80.8
Bone: cortical apparent density0.10.10.20.50.3-0.2-0.3
Bone: cortical area0.10.10.2-0.1-0.20.5-0.1
Bone: cortical porosity0.50.60.70.70.8-0.7-0.7
Bone: cortical porosity0.40.40.40.70.7-0.5-0.6
Bone: cortical thickness0.00.10.20.20.10.0-0.5
Bone: cortical thickness4.55.36.32.22.4-2.1-2.5
Bone: cortical tissue density0.10.10.20.40.2-0.1-0.2
Bone: elastic displacement2.12.32.51.61.4-1.5-1.6
Bone: elastic work1.62.02.41.51.3-1.3-1.5
Bone: endosteal estimation0.30.60.70.90.7-0.6-0.8
Bone: endosteal perimeter0.20.50.7-0.6-0.70.80.7
Bone: final force0.00.00.1-0.00.0-0.0-0.2
Bone: final moment0.10.10.30.30.3-0.3-0.5
Bone: marrow area0.30.50.70.80.7-0.6-0.8
Bone: maximum diameter0.10.10.3-0.2-0.30.60.1
Bone: maximum force0.00.10.1-0.2-0.20.30.0
Bone: maximum moment0.00.10.20.20.2-0.1-0.4
Bone: minimum diameter0.30.61.2-0.6-0.91.10.5
Bone: periosteal estimation0.10.20.40.50.4-0.1-0.6
Bone: periosteal perimeter1.01.72.2-1.2-1.31.51.1
Bone: post-yield work0.00.00.10.10.2-0.1-0.1
Bone: stiffness0.40.60.8-0.8-0.70.90.7
Bone: tissue strength0.00.00.00.20.00.0-0.1
Bone: trabecular number0.40.61.0-1.0-0.70.70.7
Bone: trabecular spacing0.30.40.5-0.6-0.70.60.7
Bone: trabecular thickness0.20.20.3-0.6-0.50.50.4
Bone: trabecular tissue density1.01.41.61.31.2-1.0-1.2
Breakpoint value in progressive ratio session1.31.51.71.11.3-1.3-1.2
Distance traveled before self-admin0.50.50.8-0.7-0.80.90.6
Distance traveled after self-admin0.40.50.6-0.7-0.70.80.5
Delta time in closed arm before/after self-admin0.00.00.1-0.1-0.10.20.3
Delta time in open arm before/after self-admin0.50.50.80.60.8-0.5-0.9
Diff in mean of infusions in LGA sessions0.50.60.90.50.8-0.6-1.0
Extinction: sum of active levers before priming0.60.60.8-0.7-0.70.90.9
Active lever presses in extinction session 60.70.70.9-0.7-0.90.71.0
Delta distance traveled before/after self-admin0.20.20.30.50.4-0.5-0.3
Delta ambulatory time before/after self-admin0.10.10.20.40.4-0.3-0.3
Time in closed arm before self-admin0.50.60.8-0.9-0.80.70.7
Time in closed arm after self-admin0.30.30.4-0.4-0.50.60.7
Time in open arm before self-admin0.60.60.91.00.8-0.9-0.5
Time in open arm after self-admin1.41.61.61.21.3-1.2-1.3
Sum of active levers in priming session hrs 5-60.30.30.50.60.6-0.4-0.7
Time to tail flick, vehicle, before self-admin5.25.36.0-2.4-2.32.32.0
Time to tail flick, vehicle, after self-admin5.05.46.2-2.5-2.32.32.2
Time to tail flick, test, before self-admin0.70.71.0-0.9-0.71.00.7
Time to tail flick, test, after self-admin2.02.02.5-1.4-1.41.61.3
Delta time to tail flick, vehicle, before/after SA0.00.00.0-0.00.1-0.1-0.0
Delta time to tail flick, test, before/after SA0.20.10.2-0.2-0.50.30.5
Ambulatory time before self-admin0.20.20.4-0.4-0.50.60.3
Ambulatory time after self-admin0.40.40.6-0.6-0.60.80.5
Total heroin consumption0.80.91.01.01.0-0.9-0.9
Area under the delay curve0.40.40.50.70.7-0.5-0.7
Delay disc. indifference point, 0s delay0.10.10.10.20.2-0.1-0.4
Delay disc. indifference point, 16s delay2.32.32.71.51.5-1.4-1.6
Delay disc. indifference point, 2s delay0.50.60.70.70.8-0.8-0.7
Delay disc. indifference point, 24s delay0.30.30.50.70.5-0.5-0.4
Delay disc. indifference point, 4s delay0.40.50.60.60.8-0.6-0.7
Delay disc. indifference point, 8s delay0.10.10.2-0.3-0.30.40.4
Delay discount exponential model param0.50.50.6-0.7-0.80.60.7
Delay discount hyperbolic model param0.40.40.5-0.6-0.70.60.6
Fecal boli incidents, locomotor time 110.010.811.83.43.4-3.2-3.2
Change in fecal boli incidents, locomotor task8.17.78.2-2.9-2.72.72.8
Time >=10cm from walls, locomotor time 10.10.10.20.40.3-0.4-0.1
Bouts of movement, locomotor time 11.51.72.11.21.3-1.1-1.4
Total resting periods, locomotor time 11.31.41.71.21.3-1.0-1.3
Rest time, locomotor task time 10.70.81.00.91.0-0.7-0.9
Distance moved, locomotor task time 12.22.43.1-1.8-1.61.51.4
Vertical activity count, locomotor time 10.10.20.2-0.4-0.50.30.3
Time >=10cm from walls, locomotor time 26.16.56.9-2.5-2.62.52.6
Bouts of movement, locomotor time 20.00.00.10.40.1-0.1-0.2
Total resting periods, locomotor time 20.00.00.10.30.0-0.0-0.0
Rest time, locomotor task time 21.92.22.71.61.5-1.5-1.2
Distance moved, locomotor task time 23.54.15.4-2.3-2.02.11.5
Vertical activity count, locomotor time 22.32.52.9-1.7-1.71.71.3
Weight adjusted by age2.22.52.71.51.6-1.6-1.6
Seeking ratio, delayed vs. immediate footshock0.10.20.3-0.5-0.60.30.1
Locomotion in novel chamber0.60.70.8-0.9-0.80.90.7
Locomotion in novel chamber post-restriction1.31.51.61.31.2-1.2-1.2
Progressive ratio0.50.60.9-0.9-0.70.80.6
Food seeking constrained by brief footshock1.31.62.1-1.4-1.31.21.1
Seeking ratio, punishment vs. effort0.20.20.30.50.4-0.5-0.4
Run reversals in cocaine runway, females0.10.10.2-0.1-0.10.50.3
Run reversals in cocaine runway, males3.83.73.92.01.8-2.0-1.9
Latency to leave start box in cocaine runway0.10.10.20.40.2-0.2-0.1
Latency to leave start box in cocaine runway, F0.00.00.10.1-0.20.10.3
Latency to leave start box in cocaine runway, M0.40.40.50.60.6-0.5-0.7
Cd content in liver2.02.13.1-1.8-1.41.21.5
Co content in liver1.71.92.11.31.4-1.4-1.5
Cu content in liver0.80.91.21.10.9-0.7-1.1
Fe content in liver0.91.11.41.01.1-1.2-0.9
K content in liver1.91.92.51.31.3-1.3-1.6
Mg content in liver2.32.33.11.41.5-1.4-1.8
Mn content in liver1.82.12.31.41.5-1.5-1.4
Na content in liver0.20.20.50.70.4-0.3-0.5
Rb content in liver1.31.62.01.01.2-1.4-1.3
Se content in liver4.65.55.82.32.4-2.3-2.4
Sr content in liver0.40.40.70.80.5-0.3-0.6
Zn content in liver0.10.20.20.40.4-0.4-0.4