Med1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000005606 0.05 0.04 2.0e-04 0.03 0.03 0.02 0.02 6.8e-04 6.3e-04 1.1e-03 1.1e-03
2 Liver gene expression ENSRNOG00000005606 0.03 0.03 9.9e-04 0.02 0 0 0.01 2.0e-03 2.1e-01 9.6e-02 7.3e-03
3 Liver intron excision ratio chr10:83174436:83175382 0.02 0.02 3.9e-03 0.02 0.02 0 0.02 2.7e-03 4.2e-03 1.9e-01 1.6e-03
4 OFC isoform ratio ENSRNOT00000114652 0.84 0.11 6.9e-03 -0 -0 0.03 -0.01 3.8e-01 3.9e-01 5.7e-02 5.1e-01

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail1.65.37.5-1.82.4-2.7-2.1
BMI without tail0.10.10.2-0.40.2-0.50.2
Body weight4.418.424.1-4.54.9-4.5-3.0
Epididymis fat weight0.10.20.6-0.80.4-0.2-0.1
Glucose0.40.51.71.3-0.60.2-0.1
Heart weight2.23.24.1-2.01.8-2.0-1.1
Left kidney weight1.23.67.8-2.81.8-1.8-0.3
Right kidney weight0.20.61.3-1.10.8-0.6-0.2
Tail length0.51.43.5-1.90.9-0.70.9
Length with tail2.79.817.2-4.13.5-3.0-1.0
Length without tail3.37.310.1-3.03.2-2.6-1.9
Liver weight, left0.10.10.3-0.4-0.10.10.6
Liver weight, right0.61.02.20.1-0.91.01.5
Parametrial fat weight1.73.35.00.9-1.72.22.2
Retroperitoneal fat weight0.00.10.3-0.50.1-0.30.2
Intraocular pressure2.33.24.0-1.31.9-2.0-1.9
Extensor digitorum longus weight8.132.440.0-5.56.1-6.3-4.8
Soleus weight0.41.32.61.6-0.0-0.3-1.6
Tibialis anterior weight1.24.35.2-1.82.3-2.3-1.9
Tibia length1.54.47.8-0.92.1-2.1-2.8
Number of licking bursts0.40.41.21.1-0.30.4-0.5
Food consumed during 24 hour testing period0.70.81.4-0.91.2-0.8-0.6
Times rat made contact with spout0.91.11.41.2-1.11.20.5
Mean time between licks in bursts1.11.51.9-1.31.4-1.3-1.0
Mean num. licks in bursts0.30.30.7-0.1-0.50.50.8
Std. dev. time between licks in bursts0.10.10.2-0.40.2-0.20.0
Water consumed over 24 hours0.20.20.70.10.4-0.1-0.9
Indifference point 0 sec1.62.63.81.2-1.71.61.9
Indifference point AUC0.10.10.20.0-0.1-0.4-0.2
Indifference point function ln k0.00.00.1-0.20.30.0-0.2
Indifference point function log k0.00.00.1-0.20.30.0-0.2
Delay discounting total patch changes 0 sec1.21.93.00.9-1.51.31.7
Delay discounting total patch changes 12 sec5.47.19.12.4-3.02.62.6
Delay discounting total patch changes 18 sec0.30.40.80.7-0.90.50.4
Delay discounting total patch changes 24 sec1.21.62.61.6-1.41.10.6
Delay discounting total patch changes 6 sec2.33.54.61.4-2.11.72.1
Delay discounting time to switch 0 sec0.10.20.40.2-0.40.40.6
Delay discounting water rate 0 sec0.10.10.4-0.2-0.30.20.6
Delay discounting water rate 12 sec0.20.30.5-0.70.70.0-0.4
Delay discounting water rate 18 sec0.40.61.00.8-0.61.00.5
Delay discounting water rate 24 sec0.70.91.40.5-1.01.21.0
Delay discounting water rate 6 sec1.42.02.61.0-1.51.61.5
Locomotor activity0.40.61.51.2-0.60.8-0.2
Locomotor testing distance1.62.74.82.2-1.71.70.3
Locomotor testing rearing4.87.59.82.5-3.12.92.3
Light reinforcement 12.64.76.41.6-2.52.32.2
Light reinforcement 20.91.22.01.1-1.40.90.9
Reaction time number correct0.40.61.1-0.61.1-0.9-0.4
Reaction time mean minus median0.30.40.9-0.30.6-0.5-1.0
Reaction time mean minus median AUC0.20.31.00.50.0-0.1-1.0
Reaction time num false alarms0.60.81.51.2-1.00.80.3
Reaction time num false alarms AUC0.40.61.31.1-0.90.70.2
Reaction time trials correct on left0.40.61.1-0.61.1-0.9-0.4
Reaction time trials on left0.40.61.1-0.61.0-0.9-0.4
Reaction time mean0.10.10.5-0.2-0.10.7-0.1
Reaction time mean AUC0.10.10.5-0.3-0.20.7-0.1
Median of all reaction times0.50.71.90.3-0.81.40.4
Reaction time omissions0.91.31.91.0-1.21.40.9
Reaction time false alarm rate0.81.11.71.3-1.31.00.3
Reaction time premature initiation rate0.20.30.90.6-0.20.9-0.1
Reaction time premature initiations0.10.20.4-0.00.60.2-0.4
Std. dev. reaction times0.10.10.4-0.00.20.1-0.6
Reaction time trials completed0.40.61.1-0.61.0-0.9-0.4
Reaction time trials AUC0.40.51.0-0.51.0-0.9-0.4
Social response proportion0.60.61.70.10.5-0.8-1.3
Social responses0.10.10.30.5-0.50.10.1
Social time0.10.10.40.30.2-0.1-0.6
Conditioned locomotion0.10.10.30.1-0.30.20.5
Cocaine response after cond. corrected1.31.54.42.1-1.10.7-0.2
Cocaine response after cond. not corrected2.12.36.62.6-1.20.8-0.6
Cocaine response before conditioning0.50.61.11.0-0.40.3-1.1
Saline control response0.60.92.20.90.3-0.5-1.5
Condit. Reinf. active minus inactive responses0.91.11.80.8-1.01.40.9
Condit. Reinf. active-inactive response ratio0.91.01.50.6-0.91.21.2
Condit. Reinf. active responses1.31.93.21.2-1.31.81.1
Condit. Reinf. inactive responses1.62.02.91.7-1.41.60.6
Condit. Reinf. lever presses0.00.00.10.1-0.10.40.1
Condit. Reinf. lever reinforcers received1.52.13.21.1-1.41.81.4
Pavlov. Cond. lever latency0.30.40.6-0.60.6-0.8-0.5
Pavlov. Cond. magazine entry latency0.10.10.10.20.1-0.3-0.4
Pavlov. Cond. change in total contacts0.70.91.10.7-1.01.01.1
Pavlov. Cond. index score0.20.30.50.7-0.60.50.2
Pavlov. Cond. latency score0.10.20.30.6-0.40.30.1
Pavlov. Cond. lever contacts0.71.01.51.2-1.01.10.5
Pavlov. Cond. magazine entry number0.10.10.3-0.60.3-0.10.1
Pavlov. Cond. intertrial magazine entries1.92.53.2-1.81.8-1.4-1.3
Pavlov. Cond. lever-magazine prob. diff.0.10.20.30.5-0.40.40.2
Pavlov. Cond. response bias1.11.61.91.3-1.41.30.9
Conditioned reinforcement - actives0.60.61.21.1-0.50.90.1
Conditioned reinforcement - inactives2.12.43.50.8-1.51.81.9
Conditioned locomotion0.50.51.61.2-0.60.60.1
Intermittent access intake day 1-15 change0.40.40.90.1-0.50.90.6
Intermittent access intake escalation0.50.50.90.0-0.50.90.9
Intermittent access intake escalation 20.10.10.1-0.30.00.20.2
Intermitt. access day 1 inactive lever presses2.83.05.40.6-1.81.72.3
Intermitt. access day 15 inactive lever presses4.24.65.81.6-2.42.22.3
Intermitt. access escalation Index2.92.64.4-0.71.9-1.4-2.1
Intermittent access day 1 total infusions0.20.30.50.4-0.30.50.7
Intermittent access day 15 total infusions0.70.81.40.3-0.71.01.2
Intermittent access terminal intake (last 3 days)0.80.91.50.4-0.81.11.2
Intermittent access total infusions0.30.30.80.1-0.30.60.9
Intermittent access day 1 locomotion0.30.30.40.6-0.60.40.6
Intermittent access day 15 total locomotion0.30.40.60.8-0.60.60.3
Intermittent access total locomotion0.60.70.80.7-0.90.90.8
Intermittent access standard deviation2.12.24.10.1-1.21.82.0
Cocaine induced anxiety1.72.03.0-1.31.7-1.4-1.1
Post-drug Anxiety0.20.20.40.00.6-0.4-0.6
Baseline Anxiety1.51.52.81.7-1.41.10.6
Lifetime Intake0.40.41.0-0.0-0.40.71.0
Incentive Sensitization - Responses1.31.32.11.0-1.21.50.9
Incentive Sensitization - Breakpoint1.31.32.01.1-1.11.40.8
Progressive ratio test 1 active lever presses0.50.51.21.1-0.60.60.0
Progressive ratio test 1 breakpoint0.40.41.11.1-0.50.6-0.0
Progressive ratio test 1 inactive lever presses1.31.42.00.6-1.21.41.3
Progressive ratio test 2 active lever presses1.11.11.81.0-1.01.40.9
Progressive ratio test 2 breakpoint0.70.81.31.0-0.81.20.5
Progressive ratio test 2 inactive lever presses0.81.02.10.1-0.81.01.5
Total sessions with >9 infusions0.50.60.70.7-0.90.80.6
Short access day 1 total inactive lever presses3.23.55.81.0-2.01.82.4
Short access day 10 total inactive lever presses0.40.51.0-0.90.20.01.0
Short access day 1 total infusions1.01.02.00.1-1.11.01.4
Short access day 10 total infusions0.30.40.50.5-0.60.70.7
Short access total infusions0.50.51.1-0.1-0.50.81.1
Short access day 1 locomotion3.84.05.21.3-2.32.12.2
Short access day 10 total locomotion1.41.52.01.4-1.31.11.1
Short access total locomotion0.60.61.10.4-0.90.71.0
Compulsive drug intake0.40.40.6-0.50.8-0.5-0.7
One hour access (0.3 mA shock)0.00.00.10.00.30.1-0.2
One hour access (shock baseline)0.30.40.50.4-0.50.70.7
Number of responses in last shaping day1.21.22.7-0.3-1.10.91.7
Context. condit. distance diff. score1.31.62.0-0.91.4-1.3-1.4
Locomotion velocity, session 10.30.30.6-0.80.4-0.60.2
Locomotion distance, session 11.62.13.8-1.91.4-1.70.1
Locomotion velocity, session 20.30.41.0-1.00.2-0.40.7
Locomotion distance, session 20.40.61.4-0.90.1-0.31.2
Locomotion velocity, session 30.30.30.7-0.7-0.20.10.8
Locomotion distance, session 30.30.30.6-0.80.3-0.60.3
Stereotopy head waving bouts, day 32.12.53.31.8-1.71.80.8
Stereotopy head waving duration, day 30.20.30.50.7-0.20.4-0.6
Locomotion velocity, session 70.70.81.4-0.70.9-1.2-0.7
Locomotion distance, session 70.30.30.7-0.20.5-0.8-0.6
Stereotopy head waving bouts, day 70.40.51.11.1-0.50.7-0.0
Stereotopy head waving duration, day 70.20.20.20.5-0.40.50.3
Locomotion velocity, session 86.67.99.6-2.83.1-3.1-2.2
Locomotion distance, session 81.01.41.9-1.41.4-1.3-0.4
Degree of sensitization distance1.01.01.8-0.41.1-1.0-1.3
Degree of sensitization stereotypy0.80.92.11.4-0.70.9-0.0
Condit. Reinf. active minus inactive responses0.80.91.40.4-1.11.01.2
Condit. Reinf. active-inactive response ratio0.70.81.10.4-0.91.11.0
Condit. Reinf. active responses0.70.91.30.7-1.11.10.8
Condit. Reinf. inactive responses0.30.41.01.0-0.50.3-0.6
Incentive salience index mean1.92.33.21.0-1.81.61.5
Condit. Reinf. lever presses1.21.62.41.2-1.51.21.0
Time in familiar zone, hab. session 10.70.61.21.1-0.90.70.1
Time in novel zone, hab. session 10.30.20.30.4-0.50.60.5
Total zone transitions, hab. session 11.41.93.2-1.81.5-1.4-0.7
Total locomotion distance, hab. session 10.00.00.1-0.30.00.20.1
Locomotion velocity, hab. session 10.30.51.1-1.00.8-0.4-0.2
Time in familiar zone, hab. session 20.80.81.00.8-1.00.90.9
Time in novel zone, hab. session 20.00.00.1-0.1-0.20.30.2
Total zone transitions, hab. session 20.60.81.2-0.70.9-1.1-0.6
Total locomotion distance, hab. session 20.10.10.2-0.20.4-0.3-0.4
Locomotion velocity, hab. session 20.20.30.4-0.40.6-0.6-0.6
Novel to familiar place preference ratio1.21.31.9-1.41.2-1.2-0.6
Novelty place preference1.11.11.4-1.21.1-1.2-0.8
Time in novel zone, NPP test0.40.50.6-0.70.7-0.7-0.6
Total zone transitions, NPP test0.20.30.5-0.30.6-0.7-0.3
Total locomotion distance, NPP test0.00.00.10.3-0.10.20.1
Locomotion velocity, NPP test0.10.20.3-0.40.5-0.4-0.2
Pavlov. Cond. lever latency2.93.74.8-2.12.2-2.0-1.2
Pavlov. Cond. magazine entry latency9.111.714.23.7-3.73.82.3
Pavlov. Cond. change in total contacts8.08.511.02.7-3.33.32.3
Pavlov. Cond. index score7.79.812.03.5-3.53.42.0
Pavlov. Cond. latency score5.97.59.93.1-3.02.91.6
Pavlov. Cond. lever contacts2.42.94.12.0-1.91.80.8
Pavlov. Cond. magazine entry number11.414.217.3-4.04.1-4.2-2.5
Pavlov. Cond. intertrial magazine entries1.51.82.3-1.51.4-1.5-0.8
Pavlov. Cond. lever-magazine prob. diff.8.510.713.13.6-3.63.52.1
Pavlov. Cond. response bias8.510.413.03.4-3.63.52.2
Bone: apparent density1.83.14.01.9-1.82.01.2
Bone surface0.00.10.20.1-0.20.20.5
Bone volume0.20.30.40.6-0.50.60.5
Bone: connectivity density2.64.05.21.9-2.12.31.6
Bone: cortical apparent density5.67.38.92.4-3.03.02.4
Bone: cortical area0.10.10.40.7-0.30.2-0.2
Bone: cortical porosity0.40.51.21.1-0.50.3-0.5
Bone: cortical porosity0.70.81.71.3-0.40.2-1.1
Bone: cortical thickness0.81.32.51.6-1.21.20.3
Bone: cortical thickness3.94.56.82.2-2.32.61.0
Bone: cortical tissue density5.67.39.02.4-3.03.02.4
Bone: elastic displacement0.00.00.10.10.10.1-0.3
Bone: elastic work0.10.10.20.1-0.20.40.4
Bone: endosteal estimation1.63.54.6-1.82.1-2.2-1.3
Bone: endosteal perimeter1.02.03.2-1.81.5-1.6-0.5
Bone: final force0.71.23.11.8-0.90.8-0.1
Bone: final moment0.60.92.71.6-0.80.6-0.3
Bone: marrow area1.53.34.3-1.72.0-2.1-1.3
Bone: maximum diameter0.00.00.10.2-0.30.20.1
Bone: maximum force0.10.20.30.60.1-0.2-0.6
Bone: maximum moment0.10.20.50.40.2-0.4-0.7
Bone: minimum diameter0.30.61.0-0.70.8-1.0-0.5
Bone: periosteal estimation0.20.40.5-0.30.7-0.7-0.6
Bone: periosteal perimeter0.40.71.0-0.70.9-1.0-0.8
Bone: post-yield work1.41.92.4-1.11.4-1.6-1.3
Bone: stiffness0.10.10.30.5-0.0-0.2-0.4
Bone: tissue strength1.01.01.4-0.51.0-1.1-1.2
Bone: trabecular number4.36.78.42.8-2.72.91.7
Bone: trabecular spacing1.01.31.8-0.71.2-1.3-1.2
Bone: trabecular thickness0.10.20.30.1-0.40.60.3
Bone: trabecular tissue density0.00.10.1-0.40.2-0.2-0.0
Breakpoint value in progressive ratio session0.80.91.9-1.20.20.41.4
Distance traveled before self-admin0.00.00.1-0.30.00.00.1
Distance traveled after self-admin1.01.11.9-1.41.2-1.1-0.4
Delta time in closed arm before/after self-admin3.63.53.9-1.81.9-2.0-1.8
Delta time in open arm before/after self-admin0.00.00.10.3-0.00.20.0
Diff in mean of infusions in LGA sessions0.20.20.5-0.70.60.1-0.3
Extinction: sum of active levers before priming1.81.92.7-0.81.5-1.4-1.6
Active lever presses in extinction session 61.71.62.80.9-1.31.11.7
Delta distance traveled before/after self-admin1.31.41.7-1.21.3-1.3-0.8
Delta ambulatory time before/after self-admin1.11.21.7-0.61.2-1.3-1.1
Time in closed arm before self-admin1.01.11.70.8-1.31.01.0
Time in closed arm after self-admin0.60.61.2-1.10.7-0.7-0.5
Time in open arm before self-admin1.71.82.9-1.71.5-1.3-0.6
Time in open arm after self-admin0.30.30.4-0.70.7-0.5-0.2
Sum of active levers in priming session hrs 5-60.50.50.60.7-0.80.60.8
Time to tail flick, vehicle, before self-admin0.10.10.30.6-0.20.2-0.0
Time to tail flick, vehicle, after self-admin0.10.10.30.5-0.30.10.0
Time to tail flick, test, before self-admin1.91.82.6-0.81.6-1.2-1.6
Time to tail flick, test, after self-admin0.40.40.60.6-0.80.40.7
Delta time to tail flick, vehicle, before/after SA0.20.20.60.8-0.40.4-0.1
Delta time to tail flick, test, before/after SA3.73.34.91.6-2.21.61.8
Ambulatory time before self-admin0.10.10.4-0.60.10.00.2
Ambulatory time after self-admin1.92.03.1-1.81.6-1.5-0.6
Total heroin consumption1.92.34.10.9-1.32.01.6
Area under the delay curve0.30.30.80.9-0.50.3-0.1
Delay disc. indifference point, 0s delay1.21.31.71.2-1.01.31.1
Delay disc. indifference point, 16s delay0.30.30.80.6-0.90.30.1
Delay disc. indifference point, 2s delay1.31.53.71.9-1.11.00.2
Delay disc. indifference point, 24s delay0.20.20.60.20.2-0.4-0.7
Delay disc. indifference point, 4s delay0.70.71.01.0-0.80.80.8
Delay disc. indifference point, 8s delay0.20.20.50.7-0.10.0-0.4
Delay discount exponential model param0.10.10.4-0.70.3-0.10.2
Delay discount hyperbolic model param0.20.30.7-0.90.5-0.30.0
Fecal boli incidents, locomotor time 10.20.20.5-0.30.1-0.7-0.6
Change in fecal boli incidents, locomotor task0.20.10.30.40.3-0.2-0.6
Time >=10cm from walls, locomotor time 10.30.30.60.7-0.70.20.3
Bouts of movement, locomotor time 11.11.31.8-0.91.2-1.0-1.3
Total resting periods, locomotor time 11.92.13.3-0.91.5-1.4-1.8
Rest time, locomotor task time 10.10.10.5-0.10.20.0-0.7
Distance moved, locomotor task time 10.30.40.50.7-0.70.40.7
Vertical activity count, locomotor time 10.00.00.10.20.0-0.30.1
Time >=10cm from walls, locomotor time 21.21.22.61.6-1.00.90.5
Bouts of movement, locomotor time 20.10.10.1-0.2-0.30.20.3
Total resting periods, locomotor time 20.10.10.3-0.5-0.10.10.2
Rest time, locomotor task time 20.91.01.4-1.20.9-0.9-0.9
Distance moved, locomotor task time 20.20.20.40.4-0.4-0.10.7
Vertical activity count, locomotor time 20.10.10.20.10.4-0.50.0
Weight adjusted by age0.50.51.3-0.20.7-0.6-1.2
Seeking ratio, delayed vs. immediate footshock0.40.50.9-0.2-0.80.61.0
Locomotion in novel chamber6.07.410.52.8-3.22.62.1
Locomotion in novel chamber post-restriction1.21.51.71.3-1.21.30.9
Progressive ratio0.30.40.80.2-0.70.20.9
Food seeking constrained by brief footshock0.20.30.40.5-0.40.50.7
Seeking ratio, punishment vs. effort0.20.30.70.40.5-0.0-0.8
Run reversals in cocaine runway, females2.42.43.7-1.71.9-1.3-1.1
Run reversals in cocaine runway, males0.50.50.80.9-0.80.80.4
Latency to leave start box in cocaine runway1.21.32.7-1.61.1-1.20.1
Latency to leave start box in cocaine runway, F1.11.22.0-1.41.2-1.2-0.2
Latency to leave start box in cocaine runway, M1.21.13.4-0.7-0.70.41.8
Cd content in liver0.10.10.20.3-0.40.20.5
Co content in liver0.60.72.0-1.40.6-0.60.1
Cu content in liver0.81.02.5-1.20.00.01.6
Fe content in liver0.70.91.2-1.11.0-1.1-0.4
K content in liver1.21.22.40.6-1.01.11.6
Mg content in liver0.80.81.70.3-0.80.91.3
Mn content in liver2.12.54.90.5-1.51.62.2
Na content in liver0.20.20.60.8-0.20.50.1
Rb content in liver1.62.02.71.1-1.51.41.7
Se content in liver5.26.38.51.5-2.72.82.9
Sr content in liver0.50.41.2-0.6-0.30.31.1
Zn content in liver3.33.65.11.2-2.02.21.9