Ntn4

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 BLA gene expression ENSRNOG00000005573 0.06 0.04 4.7e-03 0.02 0.03 0 0.01 4.4e-02 8.1e-03 1.6e-01 6.5e-02
2 LHb gene expression ENSRNOG00000005573 0.21 0.12 5.4e-03 0.04 0.06 0.03 0.05 3.7e-02 1.6e-02 6.8e-02 2.9e-02
3 Liver gene expression ENSRNOG00000005573 0.1 0.05 8.3e-11 0.05 0.06 0.05 0.05 2.9e-06 4.3e-07 4.7e-06 1.3e-06

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail3.210.511.63.0-3.3-3.4
BMI without tail7.415.417.73.4-4.1-4.2
Body weight16.168.384.27.3-8.2-9.2
Epididymis fat weight2.76.38.12.8-1.9-2.7
Glucose0.10.20.30.2-0.3-0.6
Heart weight0.50.81.70.5-1.3-0.6
Left kidney weight4.011.312.23.1-3.5-3.5
Right kidney weight3.08.710.22.5-3.1-3.2
Tail length11.334.143.55.1-5.7-6.6
Length with tail14.854.266.46.9-7.0-8.1
Length without tail7.315.918.53.9-3.7-4.3
Liver weight, left0.71.11.71.3-0.7-1.1
Liver weight, right2.84.76.12.1-1.8-2.5
Parametrial fat weight0.10.20.60.3-0.3-0.8
Retroperitoneal fat weight3.110.215.23.9-2.3-3.2
Intraocular pressure3.44.96.4-2.02.02.5
Extensor digitorum longus weight0.31.42.20.5-1.5-1.3
Soleus weight0.41.11.90.9-0.8-1.4
Tibialis anterior weight0.00.10.2-0.4-0.2-0.2
Tibia length8.925.034.65.9-3.9-5.0
Number of licking bursts0.00.00.1-0.30.20.2
Food consumed during 24 hour testing period0.00.10.10.1-0.3-0.2
Times rat made contact with spout0.20.30.70.4-0.80.0
Mean time between licks in bursts0.91.31.81.3-1.1-0.8
Mean num. licks in bursts0.10.10.20.0-0.10.5
Std. dev. time between licks in bursts0.10.10.20.4-0.10.1
Water consumed over 24 hours0.50.50.9-0.0-1.0-0.8
Indifference point 0 sec0.10.20.5-0.70.10.0
Indifference point AUC0.30.30.6-0.4-0.8-0.4
Indifference point function ln k0.00.10.10.40.20.0
Indifference point function log k0.00.10.10.40.20.0
Delay discounting total patch changes 0 sec0.10.20.5-0.70.1-0.1
Delay discounting total patch changes 12 sec0.81.01.70.0-1.3-1.2
Delay discounting total patch changes 18 sec0.30.51.1-1.1-0.20.4
Delay discounting total patch changes 24 sec0.50.71.3-0.1-1.2-0.8
Delay discounting total patch changes 6 sec0.20.30.8-0.9-0.00.4
Delay discounting time to switch 0 sec0.10.10.2-0.3-0.1-0.4
Delay discounting water rate 0 sec1.32.14.92.2-0.6-1.1
Delay discounting water rate 12 sec2.13.14.01.4-2.0-1.9
Delay discounting water rate 18 sec0.10.10.30.50.40.2
Delay discounting water rate 24 sec3.04.28.12.9-1.2-1.7
Delay discounting water rate 6 sec6.49.413.93.7-2.2-3.1
Locomotor activity5.99.310.03.0-3.0-3.2
Locomotor testing distance1.62.73.81.9-1.4-1.5
Locomotor testing rearing0.00.10.10.4-0.0-0.1
Light reinforcement 10.20.41.01.0-0.2-0.3
Light reinforcement 20.60.81.5-1.20.50.8
Reaction time number correct0.00.00.10.2-0.20.0
Reaction time mean minus median0.70.91.3-1.10.61.1
Reaction time mean minus median AUC1.01.21.9-1.00.91.4
Reaction time num false alarms0.91.33.3-1.80.50.6
Reaction time num false alarms AUC1.31.84.5-2.10.50.9
Reaction time trials correct on left0.00.00.10.2-0.20.0
Reaction time trials on left0.00.00.00.2-0.10.1
Reaction time mean0.20.30.6-0.20.80.5
Reaction time mean AUC0.10.20.3-0.20.50.3
Median of all reaction times0.10.10.20.30.5-0.1
Reaction time omissions2.93.94.4-2.01.82.1
Reaction time false alarm rate1.21.73.9-2.00.70.9
Reaction time premature initiation rate0.10.10.40.60.00.1
Reaction time premature initiations0.10.10.40.6-0.20.0
Std. dev. reaction times1.01.31.6-1.11.01.2
Reaction time trials completed0.00.00.00.2-0.10.1
Reaction time trials AUC0.00.10.10.4-0.2-0.1
Social response proportion7.27.99.92.8-2.4-3.1
Social responses3.74.87.72.8-1.5-2.1
Social time0.30.50.70.4-0.7-0.9
Conditioned locomotion0.20.20.70.20.0-0.8
Cocaine response after cond. corrected0.40.40.7-0.5-0.8-0.5
Cocaine response after cond. not corrected0.10.10.3-0.2-0.6-0.2
Cocaine response before conditioning0.60.81.50.30.81.2
Saline control response0.50.71.10.4-1.0-0.9
Condit. Reinf. active minus inactive responses0.10.10.2-0.2-0.40.3
Condit. Reinf. active-inactive response ratio0.20.20.6-0.0-0.80.1
Condit. Reinf. active responses0.00.00.00.2-0.00.2
Condit. Reinf. inactive responses0.40.51.1-0.11.10.6
Condit. Reinf. lever presses0.91.22.20.1-1.5-1.2
Condit. Reinf. lever reinforcers received0.00.10.10.40.00.2
Pavlov. Cond. lever latency0.10.10.3-0.20.50.1
Pavlov. Cond. magazine entry latency0.20.20.50.70.30.3
Pavlov. Cond. change in total contacts1.92.64.52.1-1.3-1.3
Pavlov. Cond. index score0.40.51.11.0-0.4-0.4
Pavlov. Cond. latency score0.20.30.80.9-0.2-0.3
Pavlov. Cond. lever contacts0.50.61.30.4-1.1-0.7
Pavlov. Cond. magazine entry number0.50.61.6-1.3-0.30.1
Pavlov. Cond. intertrial magazine entries0.20.30.6-0.1-0.8-0.6
Pavlov. Cond. lever-magazine prob. diff.0.40.51.11.0-0.4-0.4
Pavlov. Cond. response bias0.60.81.10.9-1.0-0.8
Conditioned reinforcement - actives0.00.00.00.2-0.20.1
Conditioned reinforcement - inactives0.10.10.3-0.5-0.30.2
Conditioned locomotion0.30.30.50.6-0.7-0.4
Intermittent access intake day 1-15 change0.00.00.00.00.10.1
Intermittent access intake escalation0.10.10.2-0.40.10.4
Intermittent access intake escalation 20.20.20.4-0.30.50.6
Intermitt. access day 1 inactive lever presses4.14.49.3-3.10.71.8
Intermitt. access day 15 inactive lever presses0.50.61.1-0.80.41.0
Intermitt. access escalation Index1.31.21.4-0.91.11.2
Intermittent access day 1 total infusions0.80.91.91.4-0.6-0.7
Intermittent access day 15 total infusions0.91.12.31.5-0.6-0.8
Intermittent access terminal intake (last 3 days)1.71.84.12.0-0.7-1.0
Intermittent access total infusions1.31.43.31.8-0.7-0.7
Intermittent access day 1 locomotion0.60.60.80.7-0.7-0.9
Intermittent access day 15 total locomotion0.20.30.40.7-0.5-0.2
Intermittent access total locomotion0.50.50.80.9-0.6-0.6
Intermittent access standard deviation0.40.41.21.10.0-0.4
Cocaine induced anxiety0.30.40.5-0.70.30.7
Post-drug Anxiety0.20.20.4-0.30.60.5
Baseline Anxiety0.10.10.40.10.60.1
Lifetime Intake1.51.74.32.1-0.4-0.7
Incentive Sensitization - Responses0.50.51.01.0-0.5-0.5
Incentive Sensitization - Breakpoint0.40.40.80.9-0.5-0.4
Progressive ratio test 1 active lever presses3.23.34.12.0-1.4-1.9
Progressive ratio test 1 breakpoint3.43.54.92.2-1.3-1.9
Progressive ratio test 1 inactive lever presses0.10.10.2-0.5-0.10.2
Progressive ratio test 2 active lever presses1.31.43.21.8-0.5-0.8
Progressive ratio test 2 breakpoint1.31.43.11.8-0.6-0.9
Progressive ratio test 2 inactive lever presses0.10.10.20.4-0.10.2
Total sessions with >9 infusions1.81.94.42.1-0.3-1.1
Short access day 1 total inactive lever presses0.60.71.0-1.00.60.9
Short access day 10 total inactive lever presses0.80.81.2-1.10.61.0
Short access day 1 total infusions1.92.05.02.2-0.2-1.0
Short access day 10 total infusions3.03.33.71.9-1.7-1.8
Short access total infusions3.23.67.22.7-1.0-1.6
Short access day 1 locomotion2.42.53.11.7-1.2-1.8
Short access day 10 total locomotion0.10.10.2-0.40.40.0
Short access total locomotion0.80.91.40.8-0.7-1.2
Compulsive drug intake0.30.30.50.10.70.6
One hour access (0.3 mA shock)1.21.44.22.10.20.1
One hour access (shock baseline)0.60.71.91.4-0.3-0.3
Number of responses in last shaping day0.20.20.50.70.2-0.0
Context. condit. distance diff. score0.40.51.11.1-0.2-0.5
Locomotion velocity, session 10.40.50.8-0.40.90.6
Locomotion distance, session 10.20.20.40.60.5-0.0
Locomotion velocity, session 20.20.20.3-0.0-0.6-0.5
Locomotion distance, session 21.11.52.51.6-0.7-1.3
Locomotion velocity, session 30.60.71.71.3-0.2-0.6
Locomotion distance, session 31.31.42.61.6-0.6-1.1
Stereotopy head waving bouts, day 31.01.21.4-1.21.01.1
Stereotopy head waving duration, day 30.30.40.6-0.80.40.6
Locomotion velocity, session 71.41.52.21.5-0.8-1.3
Locomotion distance, session 70.40.50.80.9-0.3-0.7
Stereotopy head waving bouts, day 70.20.30.5-0.5-0.7-0.3
Stereotopy head waving duration, day 70.20.30.6-0.8-0.40.0
Locomotion velocity, session 80.70.91.31.1-0.9-0.8
Locomotion distance, session 83.75.510.73.3-1.3-2.1
Degree of sensitization distance0.30.30.7-0.80.10.5
Degree of sensitization stereotypy0.30.40.9-1.0-0.40.2
Condit. Reinf. active minus inactive responses2.12.44.3-0.71.52.1
Condit. Reinf. active-inactive response ratio1.61.72.9-1.01.11.7
Condit. Reinf. active responses3.13.86.0-1.41.82.4
Condit. Reinf. inactive responses1.41.72.0-1.41.11.4
Incentive salience index mean0.70.91.80.20.91.3
Condit. Reinf. lever presses0.30.41.21.1-0.2-0.1
Time in familiar zone, hab. session 10.10.10.10.3-0.3-0.3
Time in novel zone, hab. session 11.01.01.4-1.20.71.0
Total zone transitions, hab. session 12.83.97.32.7-1.5-1.5
Total locomotion distance, hab. session 12.33.37.72.8-1.1-1.0
Locomotion velocity, hab. session 12.94.210.53.2-1.0-1.0
Time in familiar zone, hab. session 20.10.20.30.3-0.5-0.4
Time in novel zone, hab. session 20.70.70.9-0.90.60.9
Total zone transitions, hab. session 20.60.72.21.50.1-0.1
Total locomotion distance, hab. session 20.50.61.61.30.40.4
Locomotion velocity, hab. session 20.70.92.41.60.50.3
Novel to familiar place preference ratio0.20.20.4-0.3-0.70.1
Novelty place preference0.20.20.3-0.5-0.60.3
Time in novel zone, NPP test0.20.20.5-0.5-0.70.1
Total zone transitions, NPP test0.91.32.21.5-0.8-1.1
Total locomotion distance, NPP test0.60.82.31.5-0.1-0.3
Locomotion velocity, NPP test0.40.61.61.30.40.1
Pavlov. Cond. lever latency0.40.60.80.5-0.8-0.9
Pavlov. Cond. magazine entry latency0.40.51.10.10.61.0
Pavlov. Cond. change in total contacts0.80.81.3-0.41.01.1
Pavlov. Cond. index score0.30.30.70.00.60.8
Pavlov. Cond. latency score0.30.40.8-0.00.70.9
Pavlov. Cond. lever contacts0.00.00.10.30.10.2
Pavlov. Cond. magazine entry number0.30.40.6-0.3-0.8-0.7
Pavlov. Cond. intertrial magazine entries0.00.10.1-0.00.40.0
Pavlov. Cond. lever-magazine prob. diff.0.10.20.30.20.30.6
Pavlov. Cond. response bias0.20.30.40.30.60.6
Bone: apparent density0.10.20.6-0.1-0.8-0.3
Bone surface0.20.30.50.3-0.7-0.5
Bone volume0.61.11.90.6-1.4-1.0
Bone: connectivity density0.40.71.6-1.30.10.7
Bone: cortical apparent density1.01.32.11.4-0.4-1.3
Bone: cortical area1.62.43.11.4-1.5-1.8
Bone: cortical porosity1.01.12.3-0.3-1.5-0.9
Bone: cortical porosity1.21.32.30.2-1.5-1.2
Bone: cortical thickness1.32.13.30.9-1.5-1.8
Bone: cortical thickness0.30.30.9-0.9-0.2-0.3
Bone: cortical tissue density1.01.32.11.5-0.4-1.2
Bone: elastic displacement2.22.53.4-1.81.31.5
Bone: elastic work1.11.42.1-1.50.91.1
Bone: endosteal estimation0.00.10.10.00.30.3
Bone: endosteal perimeter0.71.52.71.7-0.6-1.2
Bone: final force0.60.91.30.4-1.1-1.1
Bone: final moment0.50.91.20.4-1.1-1.1
Bone: marrow area0.00.10.10.10.30.3
Bone: maximum diameter1.22.23.01.7-1.1-1.5
Bone: maximum force0.20.30.80.1-0.9-0.5
Bone: maximum moment0.20.30.70.1-0.8-0.4
Bone: minimum diameter3.15.87.62.8-2.1-2.3
Bone: periosteal estimation0.40.91.41.2-0.6-0.9
Bone: periosteal perimeter0.91.51.91.4-1.0-1.3
Bone: post-yield work0.10.20.3-0.6-0.20.4
Bone: stiffness2.74.35.71.4-2.3-2.4
Bone: tissue strength0.40.40.6-0.1-0.8-0.7
Bone: trabecular number0.50.81.4-1.20.50.9
Bone: trabecular spacing0.20.30.60.10.50.8
Bone: trabecular thickness1.41.72.40.8-1.5-1.5
Bone: trabecular tissue density0.20.30.60.80.3-0.5
Breakpoint value in progressive ratio session0.50.50.9-0.80.21.0
Distance traveled before self-admin0.40.40.80.60.90.2
Distance traveled after self-admin1.01.12.21.5-0.1-1.0
Delta time in closed arm before/after self-admin0.10.10.10.2-0.3-0.4
Delta time in open arm before/after self-admin0.60.60.9-0.9-0.9-0.1
Diff in mean of infusions in LGA sessions1.11.21.6-1.31.10.9
Extinction: sum of active levers before priming0.50.50.9-0.50.60.9
Active lever presses in extinction session 60.60.60.90.7-0.9-0.7
Delta distance traveled before/after self-admin0.70.81.30.7-0.8-1.1
Delta ambulatory time before/after self-admin0.20.20.30.0-0.5-0.6
Time in closed arm before self-admin0.20.20.50.7-0.10.1
Time in closed arm after self-admin0.50.50.60.7-0.8-0.6
Time in open arm before self-admin0.60.61.2-0.21.10.8
Time in open arm after self-admin0.40.40.9-1.0-0.20.5
Sum of active levers in priming session hrs 5-60.30.30.60.4-0.8-0.2
Time to tail flick, vehicle, before self-admin0.50.50.70.9-0.8-0.4
Time to tail flick, vehicle, after self-admin0.50.51.2-1.10.30.4
Time to tail flick, test, before self-admin0.50.50.90.80.1-0.9
Time to tail flick, test, after self-admin0.10.10.20.50.40.2
Delta time to tail flick, vehicle, before/after SA0.70.71.6-1.30.50.4
Delta time to tail flick, test, before/after SA0.30.30.7-0.3-0.10.9
Ambulatory time before self-admin0.20.20.30.50.5-0.1
Ambulatory time after self-admin1.71.83.71.9-0.2-1.3
Total heroin consumption0.00.10.10.10.20.4
Area under the delay curve0.10.10.20.4-0.5-0.1
Delay disc. indifference point, 0s delay0.20.30.7-0.3-0.80.0
Delay disc. indifference point, 16s delay0.60.60.90.9-0.6-0.7
Delay disc. indifference point, 2s delay0.30.30.80.9-0.3-0.1
Delay disc. indifference point, 24s delay1.61.63.71.9-0.6-0.8
Delay disc. indifference point, 4s delay0.10.10.2-0.3-0.4-0.3
Delay disc. indifference point, 8s delay0.30.30.7-0.2-0.8-0.2
Delay discount exponential model param0.20.20.3-0.50.60.3
Delay discount hyperbolic model param0.30.30.4-0.50.60.4
Fecal boli incidents, locomotor time 11.71.82.90.5-1.5-1.7
Change in fecal boli incidents, locomotor task2.72.53.9-0.61.82.0
Time >=10cm from walls, locomotor time 10.50.50.9-0.90.40.8
Bouts of movement, locomotor time 10.10.10.1-0.4-0.2-0.1
Total resting periods, locomotor time 10.10.10.2-0.50.10.2
Rest time, locomotor task time 10.50.51.1-1.00.30.6
Distance moved, locomotor task time 10.10.10.20.5-0.10.1
Vertical activity count, locomotor time 12.02.14.02.0-0.7-1.3
Time >=10cm from walls, locomotor time 21.01.12.0-1.10.31.4
Bouts of movement, locomotor time 20.30.40.50.6-0.5-0.7
Total resting periods, locomotor time 20.20.30.30.6-0.4-0.5
Rest time, locomotor task time 20.40.50.8-0.50.60.9
Distance moved, locomotor task time 20.10.20.30.0-0.5-0.4
Vertical activity count, locomotor time 25.96.48.31.7-2.9-2.9
Weight adjusted by age0.80.92.01.4-0.5-0.6
Seeking ratio, delayed vs. immediate footshock0.50.50.9-0.2-1.0-0.8
Locomotion in novel chamber0.70.92.41.6-0.0-0.4
Locomotion in novel chamber post-restriction0.00.00.1-0.0-0.0-0.2
Progressive ratio3.44.05.7-1.02.32.4
Food seeking constrained by brief footshock0.60.71.10.7-0.7-1.1
Seeking ratio, punishment vs. effort2.53.14.81.0-1.9-2.2
Run reversals in cocaine runway, females1.71.73.51.90.2-1.2
Run reversals in cocaine runway, males0.30.30.4-0.60.40.7
Latency to leave start box in cocaine runway0.50.60.91.0-0.6-0.7
Latency to leave start box in cocaine runway, F0.30.30.8-0.10.90.5
Latency to leave start box in cocaine runway, M4.54.35.71.7-2.4-2.1
Cd content in liver2.32.53.41.3-1.8-1.6
Co content in liver1.92.23.11.6-1.0-1.8
Cu content in liver2.42.95.70.8-1.5-2.4
Fe content in liver0.50.60.90.9-0.6-0.8
K content in liver0.50.51.1-0.4-0.4-1.1
Mg content in liver0.10.10.2-0.40.0-0.3
Mn content in liver0.20.20.50.2-0.1-0.7
Na content in liver0.30.30.3-0.6-0.6-0.5
Rb content in liver0.50.61.7-1.3-0.2-0.1
Se content in liver0.30.30.80.90.3-0.4
Sr content in liver0.20.20.40.0-0.7-0.3
Zn content in liver1.01.11.41.2-0.8-1.2