RGD1306782

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000005572 0.1 0.05 8.3e-11 0.04 0.06 0.06 0.05 4.9e-05 1.3e-07 4.5e-07 5.2e-06
2 Brain gene expression ENSRNOG00000005572 0.08 0.05 6.5e-05 0.03 0.06 0.04 0.06 9.7e-04 7.1e-06 1.6e-04 5.7e-06
3 NAcc gene expression ENSRNOG00000005572 0.04 0.03 5.4e-03 0.02 0.02 0.02 0.01 1.8e-02 1.7e-02 1.5e-02 4.0e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail1.13.76.7-0.9-1.9-2.6
BMI without tail0.10.20.30.60.3-0.2
Body weight1.35.76.8-2.0-2.6-2.5
Epididymis fat weight2.45.69.4-3.1-1.2-2.4
Glucose0.61.01.91.40.90.5
Heart weight1.52.24.9-0.2-1.3-2.2
Left kidney weight10.630.531.6-5.3-5.6-5.6
Right kidney weight11.933.936.8-5.3-6.0-6.1
Tail length0.30.81.10.41.11.0
Length with tail0.41.32.0-1.4-1.3-0.5
Length without tail1.73.85.7-1.9-2.4-1.4
Liver weight, left0.50.92.3-1.5-0.0-0.5
Liver weight, right1.52.66.1-2.5-0.1-1.2
Parametrial fat weight0.10.20.5-0.1-0.4-0.7
Retroperitoneal fat weight3.210.511.8-3.4-2.8-3.4
Intraocular pressure0.40.61.3-1.2-0.1-0.7
Extensor digitorum longus weight0.31.01.11.10.91.0
Soleus weight0.10.30.80.3-0.90.3
Tibialis anterior weight0.41.53.31.80.60.9
Tibia length1.13.04.6-1.6-2.1-1.3
Number of licking bursts0.20.20.50.1-0.10.7
Food consumed during 24 hour testing period1.82.13.3-0.9-1.8-1.5
Times rat made contact with spout1.31.52.7-0.8-1.6-1.1
Mean time between licks in bursts0.50.71.01.00.90.6
Mean num. licks in bursts1.41.62.4-1.2-1.1-1.5
Std. dev. time between licks in bursts0.91.12.31.50.21.0
Water consumed over 24 hours1.21.42.7-1.0-1.6-0.8
Indifference point 0 sec0.50.82.11.40.10.6
Indifference point AUC0.20.30.4-0.6-0.60.3
Indifference point function ln k0.40.51.0-0.5-0.5-1.0
Indifference point function log k0.40.51.0-0.5-0.5-1.0
Delay discounting total patch changes 0 sec0.61.02.31.50.30.7
Delay discounting total patch changes 12 sec0.10.10.30.2-0.5-0.0
Delay discounting total patch changes 18 sec0.20.20.50.7-0.5-0.0
Delay discounting total patch changes 24 sec0.10.20.30.40.30.5
Delay discounting total patch changes 6 sec0.30.50.80.7-0.90.5
Delay discounting time to switch 0 sec0.40.51.30.61.10.2
Delay discounting water rate 0 sec0.30.40.60.7-0.80.3
Delay discounting water rate 12 sec0.30.40.50.70.50.7
Delay discounting water rate 18 sec0.91.22.41.0-0.01.6
Delay discounting water rate 24 sec0.10.20.30.5-0.6-0.2
Delay discounting water rate 6 sec0.71.02.20.40.81.5
Locomotor activity1.11.72.3-1.5-1.2-1.2
Locomotor testing distance0.00.00.0-0.00.20.2
Locomotor testing rearing1.01.52.1-1.4-0.7-1.5
Light reinforcement 10.10.20.5-0.7-0.20.3
Light reinforcement 20.40.50.8-0.90.0-0.8
Reaction time number correct0.91.32.5-0.01.21.6
Reaction time mean minus median0.00.10.1-0.30.3-0.1
Reaction time mean minus median AUC0.30.30.6-0.60.2-0.8
Reaction time num false alarms0.40.50.9-0.30.90.8
Reaction time num false alarms AUC0.50.71.1-0.31.00.9
Reaction time trials correct on left0.91.32.5-0.01.21.6
Reaction time trials on left1.01.42.7-0.01.31.6
Reaction time mean0.30.40.60.80.70.3
Reaction time mean AUC0.20.30.40.60.60.2
Median of all reaction times0.40.61.01.00.70.4
Reaction time omissions0.30.40.60.10.80.8
Reaction time false alarm rate0.00.10.2-0.10.4-0.0
Reaction time premature initiation rate0.40.61.11.1-0.70.4
Reaction time premature initiations0.30.50.70.8-0.30.8
Std. dev. reaction times0.10.10.3-0.40.1-0.5
Reaction time trials completed1.01.42.7-0.01.31.6
Reaction time trials AUC0.81.12.2-0.11.11.5
Social response proportion0.40.51.21.1-0.2-0.4
Social responses0.10.10.3-0.2-0.10.6
Social time1.31.72.41.61.21.2
Conditioned locomotion0.40.51.3-1.1-0.0-0.5
Cocaine response after cond. corrected0.00.00.1-0.4-0.00.1
Cocaine response after cond. not corrected0.10.10.1-0.20.30.3
Cocaine response before conditioning0.30.30.50.50.70.4
Saline control response0.40.50.8-0.50.90.6
Condit. Reinf. active minus inactive responses0.50.61.6-0.0-1.3-0.5
Condit. Reinf. active-inactive response ratio0.91.02.20.2-1.5-0.8
Condit. Reinf. active responses1.01.42.4-1.0-1.5-0.9
Condit. Reinf. inactive responses1.11.42.5-1.6-1.0-0.9
Condit. Reinf. lever presses0.20.30.60.7-0.30.5
Condit. Reinf. lever reinforcers received0.60.81.7-0.5-1.3-0.7
Pavlov. Cond. lever latency1.11.42.9-1.7-0.1-1.2
Pavlov. Cond. magazine entry latency2.93.37.62.70.41.5
Pavlov. Cond. change in total contacts1.41.93.71.9-1.40.3
Pavlov. Cond. index score2.02.65.82.40.11.4
Pavlov. Cond. latency score2.33.06.82.60.11.4
Pavlov. Cond. lever contacts1.11.53.21.80.11.1
Pavlov. Cond. magazine entry number1.41.74.3-2.10.0-0.9
Pavlov. Cond. intertrial magazine entries2.63.35.4-1.4-1.6-2.3
Pavlov. Cond. lever-magazine prob. diff.2.12.75.92.40.31.5
Pavlov. Cond. response bias1.11.63.81.9-0.20.9
Conditioned reinforcement - actives0.90.91.8-1.4-0.6-0.7
Conditioned reinforcement - inactives0.20.20.40.6-0.2-0.3
Conditioned locomotion2.63.13.8-1.4-2.0-1.9
Intermittent access intake day 1-15 change0.20.20.20.50.40.5
Intermittent access intake escalation0.30.30.40.60.60.5
Intermittent access intake escalation 20.20.20.30.40.60.5
Intermitt. access day 1 inactive lever presses0.80.91.30.6-1.2-1.0
Intermitt. access day 15 inactive lever presses1.41.62.40.2-1.5-1.6
Intermitt. access escalation Index0.30.30.50.5-0.7-0.2
Intermittent access day 1 total infusions1.01.22.0-0.8-1.0-1.4
Intermittent access day 15 total infusions0.10.10.20.2-0.3-0.5
Intermittent access terminal intake (last 3 days)0.10.10.2-0.4-0.1-0.4
Intermittent access total infusions0.40.40.8-0.3-0.6-0.9
Intermittent access day 1 locomotion0.50.51.1-0.1-0.5-1.0
Intermittent access day 15 total locomotion0.20.20.3-0.3-0.3-0.6
Intermittent access total locomotion0.50.61.2-0.3-0.8-1.1
Intermittent access standard deviation0.60.61.60.1-0.5-1.3
Cocaine induced anxiety0.70.81.40.1-1.0-1.2
Post-drug Anxiety0.40.41.10.2-1.0-0.5
Baseline Anxiety1.01.02.00.41.01.4
Lifetime Intake1.21.42.4-0.4-1.2-1.5
Incentive Sensitization - Responses0.10.10.30.5-0.1-0.0
Incentive Sensitization - Breakpoint0.10.10.20.4-0.3-0.3
Progressive ratio test 1 active lever presses0.80.81.5-0.4-0.9-1.2
Progressive ratio test 1 breakpoint0.50.51.0-0.5-0.6-1.0
Progressive ratio test 1 inactive lever presses1.01.12.30.9-0.4-1.5
Progressive ratio test 2 active lever presses0.20.20.3-0.0-0.4-0.6
Progressive ratio test 2 breakpoint0.30.40.6-0.0-0.7-0.8
Progressive ratio test 2 inactive lever presses0.40.51.31.20.2-0.4
Total sessions with >9 infusions2.83.14.5-1.0-2.1-1.9
Short access day 1 total inactive lever presses1.51.72.8-0.5-1.7-1.4
Short access day 10 total inactive lever presses0.40.40.5-0.5-0.7-0.7
Short access day 1 total infusions2.12.23.8-0.6-1.6-1.9
Short access day 10 total infusions0.91.01.7-0.4-1.1-1.3
Short access total infusions3.23.56.0-0.6-2.0-2.4
Short access day 1 locomotion0.30.30.80.3-0.4-0.9
Short access day 10 total locomotion0.50.60.80.90.8-0.6
Short access total locomotion1.51.63.5-0.2-1.1-1.9
Compulsive drug intake1.01.02.50.50.61.6
One hour access (0.3 mA shock)0.30.30.70.40.90.2
One hour access (shock baseline)0.20.20.40.00.5-0.6
Number of responses in last shaping day1.01.13.11.80.20.2
Context. condit. distance diff. score3.94.77.6-2.8-1.1-2.3
Locomotion velocity, session 10.70.71.5-1.2-0.70.5
Locomotion distance, session 11.11.43.70.20.81.9
Locomotion velocity, session 20.20.30.5-0.7-0.5-0.1
Locomotion distance, session 21.11.62.71.60.31.4
Locomotion velocity, session 30.50.51.5-1.20.20.1
Locomotion distance, session 30.90.91.5-0.41.11.2
Stereotopy head waving bouts, day 30.60.71.1-0.8-1.0-0.7
Stereotopy head waving duration, day 31.82.22.6-1.6-1.5-1.3
Locomotion velocity, session 70.30.30.8-0.90.1-0.2
Locomotion distance, session 70.10.10.10.10.3-0.3
Stereotopy head waving bouts, day 71.82.14.9-2.2-0.9-0.6
Stereotopy head waving duration, day 70.91.13.0-1.7-0.3-0.5
Locomotion velocity, session 82.22.73.9-1.6-2.0-1.3
Locomotion distance, session 80.40.61.3-1.1-0.2-0.8
Degree of sensitization distance1.71.84.20.0-1.0-2.0
Degree of sensitization stereotypy1.41.64.2-2.0-0.6-0.4
Condit. Reinf. active minus inactive responses0.10.10.20.5-0.10.1
Condit. Reinf. active-inactive response ratio0.20.20.3-0.6-0.4-0.4
Condit. Reinf. active responses1.21.42.31.51.10.9
Condit. Reinf. inactive responses3.03.54.52.12.01.4
Incentive salience index mean0.20.30.80.90.10.2
Condit. Reinf. lever presses0.50.71.31.10.70.6
Time in familiar zone, hab. session 10.50.51.0-1.0-0.7-0.2
Time in novel zone, hab. session 10.00.00.10.10.0-0.3
Total zone transitions, hab. session 11.82.65.60.61.32.4
Total locomotion distance, hab. session 11.62.44.7-0.21.52.2
Locomotion velocity, hab. session 11.62.44.60.21.62.2
Time in familiar zone, hab. session 20.60.61.2-0.71.10.3
Time in novel zone, hab. session 20.50.51.40.4-1.2-0.3
Total zone transitions, hab. session 20.30.40.80.4-0.40.9
Total locomotion distance, hab. session 20.40.50.80.70.20.9
Locomotion velocity, hab. session 20.70.91.61.00.51.3
Novel to familiar place preference ratio1.61.72.6-1.6-1.3-0.8
Novelty place preference2.42.54.1-2.0-1.5-1.0
Time in novel zone, NPP test3.03.15.0-2.2-1.7-1.2
Total zone transitions, NPP test1.21.74.20.50.82.1
Total locomotion distance, NPP test0.60.92.00.60.51.4
Locomotion velocity, NPP test1.21.73.10.91.11.8
Pavlov. Cond. lever latency0.81.01.5-1.2-0.8-0.9
Pavlov. Cond. magazine entry latency0.40.51.31.10.00.4
Pavlov. Cond. change in total contacts0.60.71.81.3-0.30.4
Pavlov. Cond. index score0.30.30.91.0-0.20.0
Pavlov. Cond. latency score0.30.31.01.0-0.10.1
Pavlov. Cond. lever contacts1.01.22.11.50.90.7
Pavlov. Cond. magazine entry number0.20.20.6-0.70.1-0.2
Pavlov. Cond. intertrial magazine entries0.60.71.31.10.21.0
Pavlov. Cond. lever-magazine prob. diff.0.30.30.91.0-0.00.2
Pavlov. Cond. response bias0.40.51.41.20.20.3
Bone: apparent density0.30.40.80.90.40.6
Bone surface0.20.30.9-0.2-0.30.9
Bone volume0.00.10.2-0.1-0.00.5
Bone: connectivity density0.10.10.30.5-0.00.4
Bone: cortical apparent density0.20.30.50.50.20.7
Bone: cortical area1.31.92.3-1.2-1.5-1.4
Bone: cortical porosity0.10.10.2-0.20.1-0.4
Bone: cortical porosity0.40.40.6-0.6-0.5-0.8
Bone: cortical thickness0.61.01.40.2-1.2-1.2
Bone: cortical thickness1.01.21.9-0.1-1.4-1.2
Bone: cortical tissue density0.20.20.40.50.20.6
Bone: elastic displacement0.20.30.5-0.7-0.30.4
Bone: elastic work1.31.72.4-1.0-1.6-1.3
Bone: endosteal estimation0.61.23.2-1.8-0.60.0
Bone: endosteal perimeter1.12.35.9-2.4-0.7-0.7
Bone: final force1.93.15.4-0.9-2.3-1.8
Bone: final moment2.13.46.1-0.9-2.5-1.8
Bone: marrow area0.61.33.4-1.8-0.7-0.0
Bone: maximum diameter3.15.76.2-2.4-2.5-2.2
Bone: maximum force2.84.97.5-1.4-2.7-2.3
Bone: maximum moment3.15.48.4-1.5-2.9-2.4
Bone: minimum diameter0.30.61.4-1.2-0.3-0.5
Bone: periosteal estimation0.91.93.5-1.9-1.3-0.8
Bone: periosteal perimeter2.33.86.6-2.6-1.5-1.7
Bone: post-yield work0.60.81.8-0.2-1.3-0.8
Bone: stiffness1.52.33.3-0.7-1.8-1.8
Bone: tissue strength0.20.20.5-0.3-0.7-0.2
Bone: trabecular number0.10.10.2-0.40.40.1
Bone: trabecular spacing1.52.02.9-0.9-1.7-1.4
Bone: trabecular thickness0.60.71.30.81.10.4
Bone: trabecular tissue density1.62.34.62.20.61.3
Breakpoint value in progressive ratio session0.20.30.80.90.0-0.1
Distance traveled before self-admin0.50.50.80.90.3-0.8
Distance traveled after self-admin0.70.81.90.4-1.4-0.5
Delta time in closed arm before/after self-admin2.01.92.4-1.2-1.4-1.5
Delta time in open arm before/after self-admin0.90.81.80.41.30.8
Diff in mean of infusions in LGA sessions0.20.20.40.2-0.60.3
Extinction: sum of active levers before priming0.00.00.00.1-0.1-0.1
Active lever presses in extinction session 60.10.10.10.1-0.4-0.3
Delta distance traveled before/after self-admin1.51.63.0-1.3-1.70.0
Delta ambulatory time before/after self-admin1.92.04.4-1.3-2.10.0
Time in closed arm before self-admin5.96.810.23.22.02.5
Time in closed arm after self-admin0.30.30.5-0.2-0.5-0.7
Time in open arm before self-admin0.40.41.1-1.00.20.1
Time in open arm after self-admin1.01.22.50.01.61.0
Sum of active levers in priming session hrs 5-60.10.10.20.50.20.2
Time to tail flick, vehicle, before self-admin0.20.20.4-0.6-0.30.5
Time to tail flick, vehicle, after self-admin1.81.93.1-0.01.61.8
Time to tail flick, test, before self-admin0.50.51.2-1.10.40.2
Time to tail flick, test, after self-admin1.11.11.50.81.21.2
Delta time to tail flick, vehicle, before/after SA0.40.40.60.80.70.2
Delta time to tail flick, test, before/after SA2.52.22.91.71.11.6
Ambulatory time before self-admin0.40.40.50.70.4-0.7
Ambulatory time after self-admin0.40.40.70.6-0.80.5
Total heroin consumption0.30.30.9-0.1-1.0-0.3
Area under the delay curve0.00.00.0-0.00.20.1
Delay disc. indifference point, 0s delay0.40.51.3-0.1-0.1-1.2
Delay disc. indifference point, 16s delay0.80.81.40.70.71.2
Delay disc. indifference point, 2s delay0.20.20.5-0.5-0.2-0.7
Delay disc. indifference point, 24s delay0.80.71.4-1.2-0.80.4
Delay disc. indifference point, 4s delay0.20.20.30.3-0.6-0.5
Delay disc. indifference point, 8s delay0.30.30.60.40.80.5
Delay discount exponential model param0.00.00.00.1-0.2-0.2
Delay discount hyperbolic model param0.00.00.00.1-0.10.1
Fecal boli incidents, locomotor time 10.20.20.50.40.00.7
Change in fecal boli incidents, locomotor task1.51.42.9-1.7-1.1-0.4
Time >=10cm from walls, locomotor time 10.10.10.3-0.2-0.5-0.2
Bouts of movement, locomotor time 10.40.40.6-0.8-0.5-0.6
Total resting periods, locomotor time 10.20.20.3-0.3-0.5-0.6
Rest time, locomotor task time 10.70.71.40.1-0.8-1.2
Distance moved, locomotor task time 10.20.30.6-0.80.3-0.3
Vertical activity count, locomotor time 10.10.10.10.20.40.2
Time >=10cm from walls, locomotor time 20.10.10.10.2-0.30.3
Bouts of movement, locomotor time 20.60.71.60.1-0.6-1.3
Total resting periods, locomotor time 20.60.71.40.2-0.8-1.2
Rest time, locomotor task time 20.00.00.10.1-0.30.1
Distance moved, locomotor task time 20.40.50.8-0.80.1-0.9
Vertical activity count, locomotor time 20.10.20.3-0.5-0.1-0.5
Weight adjusted by age0.40.50.8-0.9-0.50.6
Seeking ratio, delayed vs. immediate footshock2.42.74.52.11.21.5
Locomotion in novel chamber1.51.93.70.11.91.4
Locomotion in novel chamber post-restriction1.11.32.40.71.51.1
Progressive ratio0.30.30.70.90.30.3
Food seeking constrained by brief footshock1.82.22.9-1.3-1.4-1.7
Seeking ratio, punishment vs. effort1.11.41.6-1.1-1.1-1.3
Run reversals in cocaine runway, females0.70.71.4-0.20.91.2
Run reversals in cocaine runway, males1.31.33.1-1.8-0.7-0.5
Latency to leave start box in cocaine runway0.10.10.1-0.20.0-0.4
Latency to leave start box in cocaine runway, F0.30.40.40.50.70.7
Latency to leave start box in cocaine runway, M1.41.42.8-0.8-0.9-1.7
Cd content in liver0.60.61.2-1.1-0.4-0.7
Co content in liver0.40.50.9-0.2-1.0-0.7
Cu content in liver3.54.24.62.11.92.1
Fe content in liver0.10.10.20.20.30.4
K content in liver0.50.51.11.0-0.10.5
Mg content in liver1.01.02.71.70.10.6
Mn content in liver0.30.31.0-1.0-0.1-0.2
Na content in liver2.62.73.21.81.61.6
Rb content in liver0.10.10.20.1-0.4-0.1
Se content in liver0.80.91.40.41.11.2
Sr content in liver0.70.71.30.61.10.7
Zn content in liver1.01.12.00.80.91.4