Ywhae

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain mRNA stability ENSRNOG00000005290 0.31 0.15 3.4e-10 0.12 0.1 0.12 0.02 1.8e-11 1.4e-09 6.6e-11 1.1e-02
2 Liver isoform ratio ENSRNOT00000007100 0.14 0.13 5.8e-03 0.02 0.01 0.01 0.02 2.0e-03 5.9e-02 7.7e-03 5.0e-03
3 Liver isoform ratio ENSRNOT00000108372 0.16 0.12 5.9e-03 0.02 0.01 0.02 0.02 1.4e-03 5.0e-02 2.0e-03 2.5e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail0.30.92.1-1.4-0.50.5
BMI without tail0.20.40.5-0.7-0.60.6
Body weight1.46.18.8-0.8-3.03.0
Epididymis fat weight2.96.88.7-1.7-3.03.0
Glucose2.23.45.32.31.6-1.6
Heart weight0.00.00.10.3-0.20.2
Left kidney weight1.95.415.74.00.4-0.4
Right kidney weight1.44.011.93.5-0.00.0
Tail length2.57.410.51.1-3.23.2
Length with tail1.86.59.60.5-3.13.1
Length without tail1.22.74.0-0.3-2.02.0
Liver weight, left1.32.13.10.1-1.81.8
Liver weight, right1.01.62.4-0.3-1.51.5
Parametrial fat weight7.214.217.3-2.8-4.24.2
Retroperitoneal fat weight0.10.30.70.8-0.40.4
Intraocular pressure0.50.81.1-0.31.1-1.1
Extensor digitorum longus weight2.18.420.5-4.5-1.51.5
Soleus weight3.29.312.1-1.9-3.53.5
Tibialis anterior weight4.013.926.5-5.1-2.82.8
Tibia length0.51.51.81.4-1.21.2
Number of licking bursts0.40.51.51.20.2-0.2
Food consumed during 24 hour testing period0.20.30.5-0.7-0.40.4
Times rat made contact with spout0.60.71.91.40.4-0.4
Mean time between licks in bursts0.91.21.31.1-1.11.1
Mean num. licks in bursts0.00.10.2-0.40.0-0.0
Std. dev. time between licks in bursts0.00.00.0-0.2-0.10.1
Water consumed over 24 hours0.40.50.50.7-0.70.7
Indifference point 0 sec0.10.20.6-0.80.1-0.1
Indifference point AUC0.40.50.70.40.8-0.8
Indifference point function ln k0.50.81.3-1.1-0.70.7
Indifference point function log k0.50.81.3-1.1-0.70.7
Delay discounting total patch changes 0 sec0.20.30.7-0.80.2-0.2
Delay discounting total patch changes 12 sec0.50.60.70.90.8-0.8
Delay discounting total patch changes 18 sec0.71.02.61.60.4-0.4
Delay discounting total patch changes 24 sec1.01.21.51.21.0-1.0
Delay discounting total patch changes 6 sec0.50.71.1-0.11.1-1.1
Delay discounting time to switch 0 sec0.50.82.41.5-0.20.2
Delay discounting water rate 0 sec0.20.40.5-0.70.5-0.5
Delay discounting water rate 12 sec0.10.10.20.1-0.40.4
Delay discounting water rate 18 sec1.62.12.5-1.6-1.41.4
Delay discounting water rate 24 sec0.10.10.2-0.40.3-0.3
Delay discounting water rate 6 sec0.30.50.70.20.9-0.9
Locomotor activity0.10.10.20.4-0.30.3
Locomotor testing distance0.10.10.20.2-0.40.4
Locomotor testing rearing0.00.00.1-0.2-0.00.0
Light reinforcement 10.10.10.30.6-0.20.2
Light reinforcement 21.72.26.02.40.6-0.6
Reaction time number correct0.00.00.0-0.1-0.00.0
Reaction time mean minus median0.10.10.1-0.10.4-0.4
Reaction time mean minus median AUC0.30.41.1-1.0-0.20.2
Reaction time num false alarms0.70.91.3-0.41.1-1.1
Reaction time num false alarms AUC0.81.21.7-0.41.3-1.3
Reaction time trials correct on left0.00.00.0-0.1-0.00.0
Reaction time trials on left0.00.00.0-0.20.0-0.0
Reaction time mean0.00.00.0-0.1-0.10.1
Reaction time mean AUC0.10.10.1-0.10.4-0.4
Median of all reaction times0.00.00.00.2-0.10.1
Reaction time omissions0.00.00.1-0.30.1-0.1
Reaction time false alarm rate0.50.81.1-0.51.0-1.0
Reaction time premature initiation rate0.30.41.1-1.0-0.30.3
Reaction time premature initiations0.30.41.1-1.1-0.30.3
Std. dev. reaction times0.20.30.3-0.50.5-0.5
Reaction time trials completed0.00.00.0-0.20.0-0.0
Reaction time trials AUC0.00.00.0-0.20.1-0.1
Social response proportion2.52.83.8-0.9-1.91.9
Social responses1.31.72.4-0.6-1.51.5
Social time2.43.13.5-1.5-1.91.9
Conditioned locomotion0.70.81.2-0.31.1-1.1
Cocaine response after cond. corrected0.60.70.8-0.6-0.90.9
Cocaine response after cond. not corrected1.01.11.4-0.7-1.21.2
Cocaine response before conditioning0.40.50.6-0.4-0.80.8
Saline control response0.10.10.1-0.3-0.40.4
Condit. Reinf. active minus inactive responses0.20.20.3-0.4-0.50.5
Condit. Reinf. active-inactive response ratio0.20.20.20.0-0.50.5
Condit. Reinf. active responses0.00.10.1-0.3-0.20.2
Condit. Reinf. inactive responses0.20.30.3-0.50.6-0.6
Condit. Reinf. lever presses1.01.31.70.81.3-1.3
Condit. Reinf. lever reinforcers received0.00.00.0-0.20.0-0.0
Pavlov. Cond. lever latency1.21.72.6-1.6-1.11.1
Pavlov. Cond. magazine entry latency1.11.33.92.00.0-0.0
Pavlov. Cond. change in total contacts1.01.32.61.60.8-0.8
Pavlov. Cond. index score1.72.34.42.11.1-1.1
Pavlov. Cond. latency score2.22.84.82.21.3-1.3
Pavlov. Cond. lever contacts0.81.12.71.60.6-0.6
Pavlov. Cond. magazine entry number1.01.33.3-1.8-0.50.5
Pavlov. Cond. intertrial magazine entries1.31.63.8-2.0-0.70.7
Pavlov. Cond. lever-magazine prob. diff.1.51.93.71.91.0-1.0
Pavlov. Cond. response bias1.01.43.61.90.5-0.5
Conditioned reinforcement - actives1.61.54.2-2.1-0.40.4
Conditioned reinforcement - inactives0.30.41.2-1.1-0.10.1
Conditioned locomotion0.81.01.20.71.1-1.1
Intermittent access intake day 1-15 change1.11.11.4-0.81.2-1.2
Intermittent access intake escalation1.21.21.80.01.3-1.3
Intermittent access intake escalation 21.11.11.50.61.2-1.2
Intermitt. access day 1 inactive lever presses1.92.02.21.31.5-1.5
Intermitt. access day 15 inactive lever presses0.60.70.80.60.9-0.9
Intermitt. access escalation Index4.84.36.4-0.0-2.52.5
Intermittent access day 1 total infusions0.10.10.1-0.4-0.30.3
Intermittent access day 15 total infusions0.50.60.7-0.80.7-0.7
Intermittent access terminal intake (last 3 days)0.60.71.6-1.2-0.50.5
Intermittent access total infusions0.20.20.4-0.60.4-0.4
Intermittent access day 1 locomotion0.60.61.21.10.6-0.6
Intermittent access day 15 total locomotion0.80.81.10.71.0-1.0
Intermittent access total locomotion0.20.20.30.40.5-0.5
Intermittent access standard deviation2.72.83.9-0.92.0-2.0
Cocaine induced anxiety0.30.30.5-0.10.7-0.7
Post-drug Anxiety0.00.00.0-0.1-0.10.1
Baseline Anxiety0.20.20.30.1-0.50.5
Lifetime Intake0.40.40.6-0.80.6-0.6
Incentive Sensitization - Responses0.20.20.2-0.40.4-0.4
Incentive Sensitization - Breakpoint0.10.10.1-0.40.3-0.3
Progressive ratio test 1 active lever presses0.00.00.1-0.3-0.10.1
Progressive ratio test 1 breakpoint0.30.30.4-0.7-0.40.4
Progressive ratio test 1 inactive lever presses0.80.91.30.31.1-1.1
Progressive ratio test 2 active lever presses0.20.30.4-0.70.4-0.4
Progressive ratio test 2 breakpoint0.30.30.5-0.70.5-0.5
Progressive ratio test 2 inactive lever presses0.60.71.0-0.31.0-1.0
Total sessions with >9 infusions0.10.10.2-0.40.3-0.3
Short access day 1 total inactive lever presses0.20.20.4-0.6-0.20.2
Short access day 10 total inactive lever presses0.00.00.00.00.0-0.0
Short access day 1 total infusions1.61.72.4-0.51.6-1.6
Short access day 10 total infusions0.30.41.0-1.00.3-0.3
Short access total infusions0.70.80.8-0.80.9-0.9
Short access day 1 locomotion1.01.01.50.21.2-1.2
Short access day 10 total locomotion0.90.91.30.51.1-1.1
Short access total locomotion1.11.21.70.11.3-1.3
Compulsive drug intake0.10.10.20.1-0.50.5
One hour access (0.3 mA shock)0.60.71.9-1.40.4-0.4
One hour access (shock baseline)0.30.40.9-0.90.4-0.4
Number of responses in last shaping day1.81.82.40.71.6-1.6
Context. condit. distance diff. score1.51.82.1-1.1-1.51.5
Locomotion velocity, session 13.33.64.1-1.6-2.02.0
Locomotion distance, session 10.10.10.1-0.4-0.30.3
Locomotion velocity, session 20.50.60.8-0.6-0.90.9
Locomotion distance, session 20.50.71.1-1.0-0.70.7
Locomotion velocity, session 33.94.58.52.91.6-1.6
Locomotion distance, session 30.60.60.90.21.0-1.0
Stereotopy head waving bouts, day 30.20.30.30.6-0.50.5
Stereotopy head waving duration, day 30.50.61.51.20.4-0.4
Locomotion velocity, session 70.50.61.8-1.30.1-0.1
Locomotion distance, session 71.01.33.7-1.9-0.40.4
Stereotopy head waving bouts, day 70.40.40.60.1-0.80.8
Stereotopy head waving duration, day 70.40.50.7-0.0-0.80.8
Locomotion velocity, session 80.10.10.2-0.4-0.30.3
Locomotion distance, session 81.72.53.4-0.8-1.91.9
Degree of sensitization distance2.02.02.1-1.4-1.51.5
Degree of sensitization stereotypy1.01.11.6-0.3-1.31.3
Condit. Reinf. active minus inactive responses0.10.10.30.60.1-0.1
Condit. Reinf. active-inactive response ratio1.01.13.21.80.2-0.2
Condit. Reinf. active responses0.30.41.1-1.0-0.10.1
Condit. Reinf. inactive responses2.63.19.1-3.0-0.20.2
Incentive salience index mean0.00.00.10.3-0.10.1
Condit. Reinf. lever presses0.60.81.0-0.5-1.01.0
Time in familiar zone, hab. session 11.11.02.5-1.60.6-0.6
Time in novel zone, hab. session 11.11.02.41.5-0.60.6
Total zone transitions, hab. session 10.10.10.3-0.5-0.10.1
Total locomotion distance, hab. session 10.10.20.20.1-0.50.5
Locomotion velocity, hab. session 10.00.00.1-0.1-0.30.3
Time in familiar zone, hab. session 20.60.61.4-1.2-0.50.5
Time in novel zone, hab. session 21.71.84.12.00.8-0.8
Total zone transitions, hab. session 20.30.40.6-0.2-0.80.8
Total locomotion distance, hab. session 20.20.20.30.3-0.50.5
Locomotion velocity, hab. session 20.10.20.20.3-0.40.4
Novel to familiar place preference ratio0.80.91.1-0.61.1-1.1
Novelty place preference0.30.40.4-0.60.6-0.6
Time in novel zone, NPP test0.20.20.5-0.70.3-0.3
Total zone transitions, NPP test0.10.10.10.3-0.30.3
Total locomotion distance, NPP test0.10.20.60.70.1-0.1
Locomotion velocity, NPP test0.40.50.70.90.6-0.6
Pavlov. Cond. lever latency0.10.20.2-0.50.4-0.4
Pavlov. Cond. magazine entry latency0.70.91.0-1.0-0.90.9
Pavlov. Cond. change in total contacts0.20.20.60.80.3-0.3
Pavlov. Cond. index score0.50.60.8-0.3-0.90.9
Pavlov. Cond. latency score0.60.71.1-0.1-1.11.1
Pavlov. Cond. lever contacts0.20.20.20.4-0.50.5
Pavlov. Cond. magazine entry number0.30.30.40.60.6-0.6
Pavlov. Cond. intertrial magazine entries0.10.10.20.10.4-0.4
Pavlov. Cond. lever-magazine prob. diff.0.40.50.6-0.4-0.80.8
Pavlov. Cond. response bias0.30.40.5-0.5-0.70.7
Bone: apparent density3.05.06.6-2.6-2.12.1
Bone surface1.22.13.5-1.9-1.21.2
Bone volume1.62.74.2-2.1-1.41.4
Bone: connectivity density3.35.28.5-2.9-1.91.9
Bone: cortical apparent density0.20.30.40.00.6-0.6
Bone: cortical area1.11.71.71.31.3-1.3
Bone: cortical porosity0.10.20.2-0.4-0.40.4
Bone: cortical porosity0.00.00.0-0.1-0.10.1
Bone: cortical thickness2.74.48.22.91.6-1.6
Bone: cortical thickness0.30.30.91.00.1-0.1
Bone: cortical tissue density0.10.10.2-0.10.5-0.5
Bone: elastic displacement0.50.60.80.40.9-0.9
Bone: elastic work3.34.35.82.41.9-1.9
Bone: endosteal estimation0.00.10.1-0.20.4-0.4
Bone: endosteal perimeter0.30.71.9-1.40.3-0.3
Bone: final force0.60.92.21.50.5-0.5
Bone: final moment0.50.91.81.40.7-0.7
Bone: marrow area0.00.10.1-0.20.3-0.3
Bone: maximum diameter0.50.91.0-0.91.0-1.0
Bone: maximum force0.61.12.61.60.6-0.6
Bone: maximum moment0.61.12.11.50.8-0.8
Bone: minimum diameter0.40.72.01.40.1-0.1
Bone: periosteal estimation0.30.70.70.70.9-0.9
Bone: periosteal perimeter0.30.50.8-0.20.9-0.9
Bone: post-yield work0.20.30.5-0.1-0.70.7
Bone: stiffness0.60.91.3-0.4-1.21.2
Bone: tissue strength2.02.03.31.81.2-1.2
Bone: trabecular number2.94.45.7-2.4-1.91.9
Bone: trabecular spacing0.91.21.50.61.2-1.2
Bone: trabecular thickness0.30.30.4-0.5-0.60.6
Bone: trabecular tissue density1.11.52.81.70.9-0.9
Breakpoint value in progressive ratio session1.21.32.0-0.2-1.41.4
Distance traveled before self-admin2.02.23.21.81.3-1.3
Distance traveled after self-admin0.00.00.10.30.0-0.0
Delta time in closed arm before/after self-admin0.30.30.30.40.6-0.6
Delta time in open arm before/after self-admin0.50.50.7-0.3-0.90.9
Diff in mean of infusions in LGA sessions0.91.11.4-0.6-1.21.2
Extinction: sum of active levers before priming1.41.52.3-1.5-1.01.0
Active lever presses in extinction session 60.50.50.9-0.9-0.60.6
Delta distance traveled before/after self-admin1.92.02.0-1.4-1.41.4
Delta ambulatory time before/after self-admin1.61.71.8-1.3-1.31.3
Time in closed arm before self-admin2.22.53.2-1.0-1.81.8
Time in closed arm after self-admin0.00.00.10.3-0.10.1
Time in open arm before self-admin4.04.34.51.92.1-2.1
Time in open arm after self-admin1.31.41.80.81.3-1.3
Sum of active levers in priming session hrs 5-61.71.72.0-1.0-1.41.4
Time to tail flick, vehicle, before self-admin4.54.65.4-2.3-2.02.0
Time to tail flick, vehicle, after self-admin0.20.20.6-0.80.0-0.0
Time to tail flick, test, before self-admin0.30.30.6-0.8-0.40.4
Time to tail flick, test, after self-admin0.50.50.7-0.5-0.80.8
Delta time to tail flick, vehicle, before/after SA1.51.52.10.61.4-1.4
Delta time to tail flick, test, before/after SA0.10.10.2-0.50.1-0.1
Ambulatory time before self-admin2.02.14.52.10.9-0.9
Ambulatory time after self-admin0.70.81.10.5-1.01.0
Total heroin consumption2.83.43.7-1.7-1.91.9
Area under the delay curve1.51.63.41.80.8-0.8
Delay disc. indifference point, 0s delay0.10.10.20.50.0-0.0
Delay disc. indifference point, 16s delay0.70.81.81.30.5-0.5
Delay disc. indifference point, 2s delay1.01.12.91.70.5-0.5
Delay disc. indifference point, 24s delay0.30.30.70.90.3-0.3
Delay disc. indifference point, 4s delay0.70.82.31.50.0-0.0
Delay disc. indifference point, 8s delay0.60.61.51.20.4-0.4
Delay discount exponential model param1.31.43.2-1.8-0.70.7
Delay discount hyperbolic model param1.31.43.1-1.8-0.70.7
Fecal boli incidents, locomotor time 10.00.00.0-0.1-0.20.2
Change in fecal boli incidents, locomotor task0.10.10.30.5-0.10.1
Time >=10cm from walls, locomotor time 10.70.70.8-0.90.8-0.8
Bouts of movement, locomotor time 10.20.20.6-0.8-0.00.0
Total resting periods, locomotor time 10.40.41.2-1.10.0-0.0
Rest time, locomotor task time 10.30.30.5-0.70.4-0.4
Distance moved, locomotor task time 10.10.10.1-0.40.1-0.1
Vertical activity count, locomotor time 10.20.20.6-0.8-0.00.0
Time >=10cm from walls, locomotor time 21.81.92.60.71.6-1.6
Bouts of movement, locomotor time 20.10.10.20.5-0.20.2
Total resting periods, locomotor time 20.10.10.10.2-0.30.3
Rest time, locomotor task time 20.50.50.9-1.0-0.60.6
Distance moved, locomotor task time 20.70.81.00.61.0-1.0
Vertical activity count, locomotor time 20.50.50.80.90.6-0.6
Weight adjusted by age0.50.51.3-1.2-0.30.3
Seeking ratio, delayed vs. immediate footshock2.42.83.11.51.8-1.8
Locomotion in novel chamber3.84.87.10.42.7-2.7
Locomotion in novel chamber post-restriction0.20.20.3-0.60.4-0.4
Progressive ratio0.60.70.9-0.60.9-0.9
Food seeking constrained by brief footshock0.10.10.20.40.2-0.2
Seeking ratio, punishment vs. effort0.60.71.61.3-0.50.5
Run reversals in cocaine runway, females0.70.70.90.50.9-0.9
Run reversals in cocaine runway, males0.30.30.7-0.80.3-0.3
Latency to leave start box in cocaine runway0.10.10.30.50.1-0.1
Latency to leave start box in cocaine runway, F0.20.20.40.7-0.30.3
Latency to leave start box in cocaine runway, M0.00.00.0-0.0-0.00.0
Cd content in liver1.11.21.6-0.7-1.31.3
Co content in liver0.30.40.60.80.5-0.5
Cu content in liver0.30.40.91.00.3-0.3
Fe content in liver0.60.81.10.2-1.01.0
K content in liver0.90.92.11.4-0.60.6
Mg content in liver0.30.30.40.30.6-0.6
Mn content in liver0.00.00.0-0.2-0.10.1
Na content in liver1.92.05.02.20.7-0.7
Rb content in liver0.60.82.3-1.50.0-0.0
Se content in liver0.40.51.21.10.5-0.5
Sr content in liver0.60.51.1-1.0-0.50.5
Zn content in liver0.40.51.2-1.10.3-0.3