Slc4a1ap

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000004901 0.04 0.04 4.7e-04 0.03 0.03 0.03 0.03 4.8e-04 5.0e-04 5.6e-04 5.3e-04
2 Brain gene expression ENSRNOG00000004901 0.11 0.11 3.9e-06 0.05 0.05 0.05 0.05 3.3e-05 2.2e-05 2.2e-05 2.0e-05
3 PL mRNA stability ENSRNOG00000004901 0.03 0.03 7.8e-03 0.02 0.01 0 0.01 2.1e-02 8.3e-02 2.1e-01 5.9e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail0.41.41.5-1.1-1.21.2
BMI without tail0.20.30.7-0.8-0.40.4
Body weight1.66.88.0-2.8-2.62.4
Epididymis fat weight13.431.334.4-5.9-5.45.5
Glucose0.20.30.5-0.7-0.40.5
Heart weight10.314.815.4-3.9-3.73.9
Left kidney weight0.00.00.00.1-0.20.2
Right kidney weight1.03.03.8-1.2-1.91.9
Tail length0.10.20.5-0.7-0.20.2
Length with tail1.24.45.3-2.3-2.02.0
Length without tail0.71.51.7-1.2-1.31.2
Liver weight, left1.11.82.1-1.5-1.31.3
Liver weight, right9.315.516.1-3.9-4.03.9
Parametrial fat weight6.111.913.1-3.3-3.63.4
Retroperitoneal fat weight20.768.371.4-8.4-8.18.3
Intraocular pressure5.27.38.6-2.2-2.92.9
Extensor digitorum longus weight4.417.818.54.34.1-4.3
Soleus weight4.212.315.33.93.2-3.3
Tibialis anterior weight3.411.612.93.63.2-3.4
Tibia length2.46.88.1-2.8-2.52.5
Number of licking bursts0.10.10.30.6-0.1-0.2
Food consumed during 24 hour testing period0.20.20.30.50.3-0.6
Times rat made contact with spout2.12.43.31.81.3-1.6
Mean time between licks in bursts2.63.63.7-1.8-1.91.9
Mean num. licks in bursts0.10.20.20.30.4-0.4
Std. dev. time between licks in bursts0.10.10.2-0.4-0.50.1
Water consumed over 24 hours1.51.82.21.51.0-1.5
Indifference point 0 sec0.30.40.6-0.8-0.50.7
Indifference point AUC2.12.43.31.31.5-1.8
Indifference point function ln k0.00.00.0-0.2-0.00.1
Indifference point function log k0.00.00.0-0.2-0.00.1
Delay discounting total patch changes 0 sec0.20.30.4-0.6-0.40.6
Delay discounting total patch changes 12 sec0.71.01.1-1.1-0.91.0
Delay discounting total patch changes 18 sec0.00.00.1-0.30.1-0.1
Delay discounting total patch changes 24 sec0.81.01.6-1.3-0.90.8
Delay discounting total patch changes 6 sec0.00.00.1-0.2-0.20.1
Delay discounting time to switch 0 sec0.00.10.10.4-0.10.3
Delay discounting water rate 0 sec0.10.10.2-0.40.2-0.4
Delay discounting water rate 12 sec1.72.52.8-1.6-1.71.5
Delay discounting water rate 18 sec0.60.91.0-1.0-0.90.9
Delay discounting water rate 24 sec1.72.42.4-1.5-1.51.6
Delay discounting water rate 6 sec1.42.12.2-1.5-1.41.4
Locomotor activity0.20.30.5-0.1-0.70.5
Locomotor testing distance0.10.20.50.70.3-0.3
Locomotor testing rearing1.11.72.41.01.5-1.3
Light reinforcement 13.76.77.92.82.4-2.5
Light reinforcement 22.83.74.92.21.7-1.8
Reaction time number correct0.50.71.01.00.7-0.9
Reaction time mean minus median0.00.00.0-0.20.2-0.0
Reaction time mean minus median AUC0.10.10.1-0.3-0.10.3
Reaction time num false alarms0.10.20.40.7-0.20.1
Reaction time num false alarms AUC0.20.20.70.8-0.20.0
Reaction time trials correct on left0.50.71.01.00.7-0.9
Reaction time trials on left0.60.81.01.00.7-0.9
Reaction time mean1.41.92.1-1.3-1.41.5
Reaction time mean AUC1.21.61.9-1.1-1.31.4
Median of all reaction times1.62.22.5-1.2-1.61.6
Reaction time omissions0.10.10.10.30.3-0.4
Reaction time false alarm rate0.20.20.30.2-0.60.5
Reaction time premature initiation rate0.20.20.3-0.5-0.50.5
Reaction time premature initiations0.00.00.00.1-0.1-0.1
Std. dev. reaction times0.30.50.7-0.9-0.50.6
Reaction time trials completed0.60.81.01.00.7-0.9
Reaction time trials AUC0.71.01.31.10.9-1.0
Social response proportion0.30.30.7-0.8-0.30.2
Social responses0.10.10.3-0.5-0.1-0.1
Social time0.50.71.9-1.4-0.40.2
Conditioned locomotion3.23.84.12.01.9-1.9
Cocaine response after cond. corrected0.91.01.71.30.8-0.9
Cocaine response after cond. not corrected1.92.13.21.81.2-1.3
Cocaine response before conditioning1.11.41.61.01.3-1.2
Saline control response0.71.01.30.81.0-1.1
Condit. Reinf. active minus inactive responses4.25.25.32.32.3-2.3
Condit. Reinf. active-inactive response ratio1.01.11.21.11.0-1.0
Condit. Reinf. active responses3.65.05.62.22.4-2.2
Condit. Reinf. inactive responses2.02.52.81.51.7-1.5
Condit. Reinf. lever presses2.23.03.21.81.6-1.7
Condit. Reinf. lever reinforcers received3.14.45.02.02.2-2.0
Pavlov. Cond. lever latency1.92.52.9-1.6-1.51.7
Pavlov. Cond. magazine entry latency0.30.30.50.40.6-0.7
Pavlov. Cond. change in total contacts0.60.91.01.00.8-1.0
Pavlov. Cond. index score1.11.41.91.11.1-1.4
Pavlov. Cond. latency score1.01.31.81.01.0-1.3
Pavlov. Cond. lever contacts0.91.31.51.21.0-1.2
Pavlov. Cond. magazine entry number0.10.10.2-0.3-0.30.5
Pavlov. Cond. intertrial magazine entries3.24.24.5-2.0-2.12.1
Pavlov. Cond. lever-magazine prob. diff.0.81.01.40.90.9-1.2
Pavlov. Cond. response bias1.72.42.81.61.4-1.7
Conditioned reinforcement - actives1.41.42.10.31.4-1.4
Conditioned reinforcement - inactives2.52.83.21.41.8-1.8
Conditioned locomotion0.81.01.4-0.61.1-1.2
Intermittent access intake day 1-15 change0.20.20.4-0.20.4-0.6
Intermittent access intake escalation0.10.10.2-0.40.2-0.4
Intermittent access intake escalation 20.40.40.9-1.0-0.50.3
Intermitt. access day 1 inactive lever presses0.10.10.1-0.00.3-0.3
Intermitt. access day 15 inactive lever presses6.97.69.62.13.0-3.1
Intermitt. access escalation Index0.30.30.4-0.7-0.40.5
Intermittent access day 1 total infusions4.95.66.02.22.4-2.5
Intermittent access day 15 total infusions2.12.33.11.11.6-1.8
Intermittent access terminal intake (last 3 days)1.81.92.81.01.5-1.7
Intermittent access total infusions2.32.53.41.21.7-1.8
Intermittent access day 1 locomotion2.12.12.41.51.4-1.4
Intermittent access day 15 total locomotion0.80.81.40.60.9-1.2
Intermittent access total locomotion0.50.50.90.30.7-1.0
Intermittent access standard deviation0.20.20.4-0.00.6-0.6
Cocaine induced anxiety0.30.30.50.20.6-0.7
Post-drug Anxiety1.11.21.6-0.9-1.31.2
Baseline Anxiety1.51.62.3-0.7-1.51.5
Lifetime Intake3.23.64.61.42.1-2.1
Incentive Sensitization - Responses0.10.10.2-0.5-0.30.2
Incentive Sensitization - Breakpoint0.30.30.5-0.7-0.50.4
Progressive ratio test 1 active lever presses1.71.72.40.61.6-1.5
Progressive ratio test 1 breakpoint1.51.52.20.61.5-1.4
Progressive ratio test 1 inactive lever presses3.84.15.81.12.4-2.3
Progressive ratio test 2 active lever presses0.20.20.3-0.20.4-0.5
Progressive ratio test 2 breakpoint0.20.20.4-0.20.5-0.6
Progressive ratio test 2 inactive lever presses2.02.33.30.81.7-1.8
Total sessions with >9 infusions2.83.04.51.02.1-1.9
Short access day 1 total inactive lever presses4.14.55.21.92.3-2.2
Short access day 10 total inactive lever presses0.70.80.90.90.9-0.9
Short access day 1 total infusions5.15.47.51.52.7-2.5
Short access day 10 total infusions4.04.45.01.82.2-2.2
Short access total infusions3.23.54.61.32.1-2.1
Short access day 1 locomotion6.97.39.32.13.1-2.9
Short access day 10 total locomotion0.70.81.00.80.8-1.0
Short access total locomotion0.60.60.90.40.9-0.9
Compulsive drug intake0.70.71.3-0.0-0.81.1
One hour access (0.3 mA shock)1.82.12.61.21.5-1.6
One hour access (shock baseline)2.22.64.01.01.7-2.0
Number of responses in last shaping day0.70.71.10.21.0-1.0
Context. condit. distance diff. score0.00.00.0-0.1-0.10.1
Locomotion velocity, session 10.00.00.1-0.3-0.10.1
Locomotion distance, session 11.72.12.61.61.2-1.6
Locomotion velocity, session 20.20.30.4-0.4-0.60.5
Locomotion distance, session 20.00.00.0-0.1-0.1-0.1
Locomotion velocity, session 30.60.71.10.71.0-0.8
Locomotion distance, session 30.80.80.90.90.9-0.9
Stereotopy head waving bouts, day 31.92.32.81.31.7-1.5
Stereotopy head waving duration, day 30.20.20.30.30.6-0.5
Locomotion velocity, session 70.91.01.40.81.0-1.2
Locomotion distance, session 70.00.10.2-0.10.0-0.4
Stereotopy head waving bouts, day 70.00.00.0-0.0-0.10.2
Stereotopy head waving duration, day 70.40.50.70.60.8-0.7
Locomotion velocity, session 80.30.30.60.00.6-0.8
Locomotion distance, session 80.20.30.60.50.4-0.7
Degree of sensitization distance0.90.91.1-1.0-1.00.7
Degree of sensitization stereotypy0.10.20.2-0.2-0.40.5
Condit. Reinf. active minus inactive responses0.60.60.8-0.6-0.80.9
Condit. Reinf. active-inactive response ratio0.60.71.1-0.6-0.71.0
Condit. Reinf. active responses0.20.20.50.70.2-0.4
Condit. Reinf. inactive responses1.61.92.41.51.0-1.5
Incentive salience index mean0.00.00.10.30.1-0.0
Condit. Reinf. lever presses0.50.71.21.10.7-0.7
Time in familiar zone, hab. session 10.70.71.0-1.0-0.80.7
Time in novel zone, hab. session 10.60.60.7-0.7-0.70.8
Total zone transitions, hab. session 10.10.10.30.40.1-0.5
Total locomotion distance, hab. session 10.20.20.50.30.3-0.7
Locomotion velocity, hab. session 11.01.41.91.20.9-1.4
Time in familiar zone, hab. session 20.00.00.0-0.00.1-0.1
Time in novel zone, hab. session 20.50.50.6-0.6-0.70.8
Total zone transitions, hab. session 20.10.20.20.50.2-0.5
Total locomotion distance, hab. session 20.20.30.50.50.3-0.7
Locomotion velocity, hab. session 20.40.60.80.80.6-0.9
Novel to familiar place preference ratio1.01.11.4-0.8-1.11.2
Novelty place preference1.71.82.1-1.1-1.41.5
Time in novel zone, NPP test1.92.02.5-1.2-1.41.6
Total zone transitions, NPP test1.41.92.21.41.3-1.5
Total locomotion distance, NPP test1.82.52.81.51.5-1.7
Locomotion velocity, NPP test3.14.44.92.11.9-2.2
Pavlov. Cond. lever latency1.51.92.0-1.4-1.41.4
Pavlov. Cond. magazine entry latency0.00.00.00.10.2-0.0
Pavlov. Cond. change in total contacts0.00.00.00.20.2-0.1
Pavlov. Cond. index score0.60.80.80.90.9-0.8
Pavlov. Cond. latency score0.50.70.70.90.8-0.8
Pavlov. Cond. lever contacts0.91.11.31.11.0-1.0
Pavlov. Cond. magazine entry number0.40.50.5-0.7-0.70.7
Pavlov. Cond. intertrial magazine entries1.21.51.71.31.1-1.2
Pavlov. Cond. lever-magazine prob. diff.1.41.82.01.41.3-1.3
Pavlov. Cond. response bias1.41.71.71.31.3-1.2
Bone: apparent density5.28.69.53.02.7-3.1
Bone surface2.54.35.22.11.8-2.3
Bone volume2.64.55.52.11.9-2.3
Bone: connectivity density4.97.88.62.92.6-2.8
Bone: cortical apparent density0.30.40.60.80.4-0.7
Bone: cortical area0.20.40.60.60.4-0.8
Bone: cortical porosity1.61.82.31.01.5-1.4
Bone: cortical porosity1.31.41.71.01.3-1.3
Bone: cortical thickness0.10.10.3-0.1-0.50.2
Bone: cortical thickness1.41.71.91.31.2-1.4
Bone: cortical tissue density0.20.30.40.70.3-0.6
Bone: elastic displacement0.81.01.11.01.0-0.9
Bone: elastic work1.11.41.71.31.1-1.1
Bone: endosteal estimation0.40.81.10.80.9-1.0
Bone: endosteal perimeter0.10.30.30.50.4-0.6
Bone: final force0.10.20.30.30.3-0.6
Bone: final moment0.10.20.40.40.3-0.7
Bone: marrow area0.40.91.10.90.9-1.1
Bone: maximum diameter0.81.41.61.31.0-1.3
Bone: maximum force0.00.00.10.00.1-0.3
Bone: maximum moment0.00.10.20.10.2-0.4
Bone: minimum diameter0.10.20.2-0.5-0.50.2
Bone: periosteal estimation0.51.11.41.00.9-1.2
Bone: periosteal perimeter0.20.30.40.60.3-0.6
Bone: post-yield work0.50.70.90.70.9-1.0
Bone: stiffness0.00.00.1-0.2-0.2-0.1
Bone: tissue strength0.90.91.1-0.7-1.11.0
Bone: trabecular number4.16.46.82.62.4-2.6
Bone: trabecular spacing3.44.45.3-1.9-2.12.3
Bone: trabecular thickness0.91.01.60.80.9-1.3
Bone: trabecular tissue density0.20.20.40.30.5-0.6
Breakpoint value in progressive ratio session1.82.02.11.31.4-1.4
Distance traveled before self-admin0.00.00.00.20.1-0.1
Distance traveled after self-admin0.80.81.1-0.7-1.01.0
Delta time in closed arm before/after self-admin0.00.00.0-0.1-0.10.2
Delta time in open arm before/after self-admin0.30.30.40.50.6-0.6
Diff in mean of infusions in LGA sessions0.30.40.50.30.7-0.7
Extinction: sum of active levers before priming0.50.50.90.90.5-0.6
Active lever presses in extinction session 60.80.81.30.21.0-1.1
Delta distance traveled before/after self-admin1.61.71.7-1.3-1.31.3
Delta ambulatory time before/after self-admin0.30.30.3-0.6-0.60.5
Time in closed arm before self-admin0.30.40.7-0.9-0.50.4
Time in closed arm after self-admin1.01.11.6-1.3-0.90.9
Time in open arm before self-admin0.20.20.30.5-0.30.4
Time in open arm after self-admin1.51.62.81.71.0-1.0
Sum of active levers in priming session hrs 5-60.70.71.51.20.6-0.6
Time to tail flick, vehicle, before self-admin2.22.22.7-1.6-1.31.5
Time to tail flick, vehicle, after self-admin3.63.85.4-2.3-1.71.8
Time to tail flick, test, before self-admin0.60.60.60.70.8-0.8
Time to tail flick, test, after self-admin0.10.10.1-0.3-0.20.2
Delta time to tail flick, vehicle, before/after SA0.00.00.1-0.20.1-0.1
Delta time to tail flick, test, before/after SA0.30.30.30.50.5-0.5
Ambulatory time before self-admin0.10.10.20.50.1-0.3
Ambulatory time after self-admin0.60.70.9-0.6-0.90.9
Total heroin consumption3.03.64.12.01.8-1.8
Area under the delay curve0.20.20.70.8-0.1-0.2
Delay disc. indifference point, 0s delay2.93.24.5-1.3-2.11.8
Delay disc. indifference point, 16s delay0.50.51.31.10.1-0.3
Delay disc. indifference point, 2s delay0.30.30.5-0.5-0.70.5
Delay disc. indifference point, 24s delay2.32.35.12.30.8-1.0
Delay disc. indifference point, 4s delay0.00.00.00.0-0.2-0.1
Delay disc. indifference point, 8s delay0.30.30.80.90.0-0.3
Delay discount exponential model param0.40.51.2-1.1-0.20.4
Delay discount hyperbolic model param0.40.40.9-1.0-0.20.5
Fecal boli incidents, locomotor time 10.30.30.40.60.5-0.4
Change in fecal boli incidents, locomotor task4.24.04.2-1.9-2.02.1
Time >=10cm from walls, locomotor time 10.10.10.10.1-0.30.3
Bouts of movement, locomotor time 12.62.93.41.81.4-1.9
Total resting periods, locomotor time 12.93.23.81.81.6-1.9
Rest time, locomotor task time 10.10.10.20.10.5-0.4
Distance moved, locomotor task time 11.31.51.9-1.0-1.31.4
Vertical activity count, locomotor time 10.70.71.0-0.5-1.01.0
Time >=10cm from walls, locomotor time 20.20.30.5-0.00.5-0.7
Bouts of movement, locomotor time 20.10.10.3-0.2-0.50.1
Total resting periods, locomotor time 20.00.00.0-0.0-0.2-0.2
Rest time, locomotor task time 21.41.61.71.31.2-1.2
Distance moved, locomotor task time 20.91.11.5-1.2-0.90.9
Vertical activity count, locomotor time 20.50.51.0-1.0-0.50.4
Weight adjusted by age0.10.10.1-0.30.4-0.2
Seeking ratio, delayed vs. immediate footshock0.10.10.4-0.6-0.0-0.0
Locomotion in novel chamber0.81.01.0-1.0-1.01.0
Locomotion in novel chamber post-restriction1.82.12.5-1.3-1.41.6
Progressive ratio0.20.20.3-0.40.4-0.5
Food seeking constrained by brief footshock4.04.86.41.52.5-2.4
Seeking ratio, punishment vs. effort0.50.61.11.00.6-0.5
Run reversals in cocaine runway, females0.10.10.30.0-0.40.5
Run reversals in cocaine runway, males0.30.30.60.80.4-0.2
Latency to leave start box in cocaine runway0.50.60.60.70.8-0.8
Latency to leave start box in cocaine runway, F0.60.60.70.90.7-0.7
Latency to leave start box in cocaine runway, M0.70.71.00.41.0-0.9
Cd content in liver0.00.00.00.0-0.1-0.1
Co content in liver5.46.36.72.62.4-2.5
Cu content in liver0.10.10.10.20.3-0.3
Fe content in liver0.10.10.1-0.30.30.1
K content in liver0.10.10.2-0.2-0.40.1
Mg content in liver0.20.20.3-0.4-0.50.3
Mn content in liver0.70.81.10.71.0-0.8
Na content in liver0.40.50.60.50.7-0.8
Rb content in liver0.00.00.0-0.1-0.0-0.0
Se content in liver0.30.30.7-0.9-0.40.4
Sr content in liver0.20.20.3-0.1-0.60.4
Zn content in liver1.21.31.5-1.2-1.21.0