Vit

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000004706 0.06 0.04 2.8e-07 0.03 0.04 0.03 0.04 2.7e-04 4.1e-05 9.3e-05 5.8e-05
2 Adipose mRNA stability ENSRNOG00000004706 0.05 0.04 1.7e-05 0.02 0.03 0.03 0.03 1.4e-03 2.6e-04 1.7e-04 8.3e-04
3 PL gene expression ENSRNOG00000004706 0.06 0.05 1.8e-04 0.04 0.04 0.02 0.04 5.7e-04 7.6e-04 1.3e-02 9.7e-04

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail0.41.22.0-1.20.11.4
BMI without tail1.02.12.9-1.31.71.3
Body weight1.98.113.1-3.30.53.6
Epididymis fat weight0.81.83.7-1.30.01.9
Glucose1.11.72.61.60.3-1.6
Heart weight0.50.71.4-0.71.20.4
Left kidney weight0.00.00.10.20.1-0.3
Right kidney weight0.72.04.3-0.82.11.0
Tail length0.82.53.5-1.91.11.6
Length with tail1.76.29.4-3.10.13.1
Length without tail0.71.62.5-1.2-1.01.6
Liver weight, left0.50.91.3-1.10.11.2
Liver weight, right2.23.65.1-2.2-1.32.0
Parametrial fat weight0.51.12.70.71.6-0.0
Retroperitoneal fat weight1.96.410.5-2.90.83.2
Intraocular pressure1.52.16.2-0.12.5-0.1
Extensor digitorum longus weight0.10.30.4-0.60.50.6
Soleus weight0.61.62.51.50.4-1.6
Tibialis anterior weight0.00.10.20.30.4-0.3
Tibia length0.30.91.1-1.0-0.71.1
Number of licking bursts0.10.10.20.4-0.3-0.3
Food consumed during 24 hour testing period0.40.51.01.00.1-0.7
Times rat made contact with spout1.31.52.41.5-0.2-1.4
Mean time between licks in bursts0.00.10.2-0.00.40.2
Mean num. licks in bursts0.60.71.01.00.2-1.0
Std. dev. time between licks in bursts0.10.10.2-0.00.40.2
Water consumed over 24 hours1.51.72.81.7-0.1-1.5
Indifference point 0 sec0.00.10.1-0.40.10.2
Indifference point AUC0.40.41.30.0-1.1-0.2
Indifference point function ln k0.30.40.6-0.50.80.5
Indifference point function log k0.30.40.6-0.50.80.5
Delay discounting total patch changes 0 sec0.10.10.2-0.50.10.3
Delay discounting total patch changes 12 sec0.30.40.5-0.7-0.70.7
Delay discounting total patch changes 18 sec0.30.40.5-0.7-0.40.7
Delay discounting total patch changes 24 sec0.81.01.4-1.1-0.51.2
Delay discounting total patch changes 6 sec0.10.10.2-0.3-0.40.3
Delay discounting time to switch 0 sec1.62.53.61.91.4-1.4
Delay discounting water rate 0 sec0.10.20.3-0.50.40.5
Delay discounting water rate 12 sec1.11.62.9-1.70.51.3
Delay discounting water rate 18 sec0.10.20.3-0.30.50.4
Delay discounting water rate 24 sec1.62.23.5-1.7-0.41.9
Delay discounting water rate 6 sec0.20.30.5-0.70.20.6
Locomotor activity1.21.91.9-1.41.41.3
Locomotor testing distance1.22.12.7-1.71.21.4
Locomotor testing rearing0.10.10.2-0.40.10.3
Light reinforcement 10.61.11.70.91.3-1.0
Light reinforcement 25.16.78.42.91.9-2.9
Reaction time number correct0.71.03.0-0.11.7-0.1
Reaction time mean minus median0.30.40.7-0.6-0.80.3
Reaction time mean minus median AUC0.50.61.2-0.7-1.10.4
Reaction time num false alarms0.30.40.60.50.5-0.8
Reaction time num false alarms AUC0.71.01.40.90.9-1.2
Reaction time trials correct on left0.71.03.0-0.11.7-0.1
Reaction time trials on left0.81.13.4-0.11.8-0.1
Reaction time mean0.40.50.6-0.80.60.8
Reaction time mean AUC0.10.20.2-0.50.30.4
Median of all reaction times0.50.70.7-0.80.90.8
Reaction time omissions0.10.20.50.00.7-0.1
Reaction time false alarm rate0.40.50.90.8-0.1-1.0
Reaction time premature initiation rate1.01.31.81.01.0-1.4
Reaction time premature initiations1.41.93.01.01.7-1.4
Std. dev. reaction times0.20.30.8-0.20.90.1
Reaction time trials completed0.81.13.4-0.11.8-0.1
Reaction time trials AUC0.91.33.8-0.11.9-0.1
Social response proportion1.01.11.21.11.0-1.0
Social responses0.50.71.3-1.2-0.30.8
Social time0.40.50.8-0.90.20.9
Conditioned locomotion0.30.40.6-0.8-0.50.6
Cocaine response after cond. corrected0.20.20.4-0.20.60.2
Cocaine response after cond. not corrected0.91.01.41.20.9-1.0
Cocaine response before conditioning3.64.37.12.70.0-2.4
Saline control response1.21.62.61.6-0.0-1.5
Condit. Reinf. active minus inactive responses1.01.31.4-1.1-1.21.1
Condit. Reinf. active-inactive response ratio0.50.50.8-0.6-0.90.7
Condit. Reinf. active responses0.70.91.1-1.1-0.90.9
Condit. Reinf. inactive responses0.20.20.5-0.7-0.20.5
Condit. Reinf. lever presses0.00.00.00.1-0.2-0.2
Condit. Reinf. lever reinforcers received0.91.31.8-1.3-0.81.2
Pavlov. Cond. lever latency0.40.50.8-0.9-0.20.8
Pavlov. Cond. magazine entry latency1.21.42.11.40.9-1.2
Pavlov. Cond. change in total contacts0.00.10.2-0.2-0.40.0
Pavlov. Cond. index score0.81.01.71.30.2-1.2
Pavlov. Cond. latency score0.81.11.71.30.2-1.2
Pavlov. Cond. lever contacts0.30.40.60.80.2-0.6
Pavlov. Cond. magazine entry number1.21.42.2-1.5-0.51.4
Pavlov. Cond. intertrial magazine entries1.82.33.1-1.8-1.21.6
Pavlov. Cond. lever-magazine prob. diff.0.81.11.71.30.3-1.2
Pavlov. Cond. response bias0.50.61.11.00.2-0.9
Conditioned reinforcement - actives0.90.91.7-0.61.30.8
Conditioned reinforcement - inactives1.21.32.21.20.5-1.5
Conditioned locomotion2.63.14.7-1.52.21.6
Intermittent access intake day 1-15 change0.30.30.6-0.5-0.20.8
Intermittent access intake escalation0.40.30.6-0.5-0.40.8
Intermittent access intake escalation 20.40.40.60.8-0.4-0.6
Intermitt. access day 1 inactive lever presses0.70.80.91.00.8-0.9
Intermitt. access day 15 inactive lever presses2.22.53.61.9-0.6-1.9
Intermitt. access escalation Index1.21.12.0-1.1-0.01.4
Intermittent access day 1 total infusions2.83.28.30.92.9-0.7
Intermittent access day 15 total infusions1.31.53.7-0.41.90.7
Intermittent access terminal intake (last 3 days)1.01.13.0-0.21.70.5
Intermittent access total infusions1.61.85.3-0.12.30.4
Intermittent access day 1 locomotion3.43.510.40.13.2-0.0
Intermittent access day 15 total locomotion0.70.72.0-0.11.4-0.2
Intermittent access total locomotion1.41.64.7-0.02.2-0.1
Intermittent access standard deviation0.10.10.3-0.20.6-0.1
Cocaine induced anxiety0.80.91.11.00.7-1.1
Post-drug Anxiety2.83.14.62.10.5-2.1
Baseline Anxiety0.30.30.80.1-0.9-0.0
Lifetime Intake2.52.88.20.22.9-0.1
Incentive Sensitization - Responses0.20.20.50.70.5-0.2
Incentive Sensitization - Breakpoint0.10.10.30.50.4-0.1
Progressive ratio test 1 active lever presses3.23.39.2-0.53.00.7
Progressive ratio test 1 breakpoint3.94.011.5-0.53.40.5
Progressive ratio test 1 inactive lever presses2.72.98.20.62.9-0.5
Progressive ratio test 2 active lever presses1.01.13.10.31.80.1
Progressive ratio test 2 breakpoint0.70.82.30.31.50.2
Progressive ratio test 2 inactive lever presses1.41.62.61.11.6-1.0
Total sessions with >9 infusions4.95.315.9-0.24.00.2
Short access day 1 total inactive lever presses0.50.50.90.80.1-1.0
Short access day 10 total inactive lever presses2.32.64.61.6-0.7-2.2
Short access day 1 total infusions1.61.75.2-0.12.30.1
Short access day 10 total infusions2.62.98.30.42.9-0.4
Short access total infusions3.84.212.00.53.5-0.6
Short access day 1 locomotion2.22.46.4-0.62.50.6
Short access day 10 total locomotion1.31.44.10.02.0-0.5
Short access total locomotion5.15.215.2-0.63.90.3
Compulsive drug intake0.10.10.20.3-0.2-0.4
One hour access (0.3 mA shock)2.93.49.90.33.20.0
One hour access (shock baseline)2.12.46.1-0.62.50.9
Number of responses in last shaping day1.41.41.6-1.31.11.2
Context. condit. distance diff. score0.40.50.9-0.80.30.9
Locomotion velocity, session 10.40.40.80.7-0.1-0.9
Locomotion distance, session 10.20.30.50.60.0-0.7
Locomotion velocity, session 20.20.30.5-0.70.20.5
Locomotion distance, session 20.00.00.1-0.30.20.1
Locomotion velocity, session 30.10.20.2-0.5-0.30.5
Locomotion distance, session 30.00.00.10.0-0.30.0
Stereotopy head waving bouts, day 30.20.20.40.5-0.1-0.6
Stereotopy head waving duration, day 30.30.30.60.60.3-0.8
Locomotion velocity, session 70.60.61.00.90.0-1.0
Locomotion distance, session 70.20.20.30.5-0.2-0.6
Stereotopy head waving bouts, day 70.70.81.31.10.2-1.1
Stereotopy head waving duration, day 70.60.71.01.00.5-0.9
Locomotion velocity, session 80.20.20.3-0.6-0.30.5
Locomotion distance, session 80.50.81.2-1.00.21.1
Degree of sensitization distance0.00.00.10.00.4-0.1
Degree of sensitization stereotypy0.20.20.30.50.3-0.4
Condit. Reinf. active minus inactive responses0.10.10.1-0.3-0.30.2
Condit. Reinf. active-inactive response ratio0.10.10.3-0.2-0.5-0.1
Condit. Reinf. active responses0.10.10.10.30.0-0.4
Condit. Reinf. inactive responses0.10.10.20.10.4-0.1
Incentive salience index mean0.00.00.10.1-0.2-0.2
Condit. Reinf. lever presses0.40.50.80.90.1-0.9
Time in familiar zone, hab. session 10.00.00.00.0-0.2-0.1
Time in novel zone, hab. session 10.10.10.1-0.3-0.10.2
Total zone transitions, hab. session 10.00.00.0-0.1-0.0-0.2
Total locomotion distance, hab. session 10.00.00.0-0.10.0-0.1
Locomotion velocity, hab. session 10.00.00.10.0-0.1-0.2
Time in familiar zone, hab. session 20.20.20.50.5-0.1-0.7
Time in novel zone, hab. session 20.80.81.3-1.0-0.01.1
Total zone transitions, hab. session 20.20.20.50.40.1-0.7
Total locomotion distance, hab. session 20.60.71.40.90.0-1.2
Locomotion velocity, hab. session 20.50.71.20.9-0.0-1.1
Novel to familiar place preference ratio0.20.20.5-0.10.70.1
Novelty place preference0.20.20.5-0.00.70.1
Time in novel zone, NPP test0.20.20.6-0.10.80.1
Total zone transitions, NPP test0.40.61.10.90.2-1.0
Total locomotion distance, NPP test0.40.60.90.90.5-0.9
Locomotion velocity, NPP test0.71.01.51.20.5-1.2
Pavlov. Cond. lever latency0.50.61.0-1.0-0.10.9
Pavlov. Cond. magazine entry latency0.10.10.20.3-0.4-0.2
Pavlov. Cond. change in total contacts0.40.50.80.90.2-0.7
Pavlov. Cond. index score0.10.10.20.4-0.2-0.2
Pavlov. Cond. latency score0.10.10.20.4-0.1-0.3
Pavlov. Cond. lever contacts0.50.61.01.00.0-0.9
Pavlov. Cond. magazine entry number0.40.50.6-0.80.70.6
Pavlov. Cond. intertrial magazine entries2.73.34.7-2.20.62.2
Pavlov. Cond. lever-magazine prob. diff.0.10.10.30.5-0.1-0.3
Pavlov. Cond. response bias0.70.81.41.2-0.2-1.0
Bone: apparent density1.72.83.81.91.0-1.9
Bone surface1.32.32.91.61.2-1.7
Bone volume1.42.43.01.71.2-1.7
Bone: connectivity density1.72.63.41.81.1-1.8
Bone: cortical apparent density0.40.50.90.90.3-0.8
Bone: cortical area0.20.30.50.6-0.1-0.7
Bone: cortical porosity1.11.11.6-1.1-0.81.3
Bone: cortical porosity1.82.02.6-1.5-1.01.6
Bone: cortical thickness0.00.00.00.1-0.2-0.0
Bone: cortical thickness0.10.10.20.40.2-0.3
Bone: cortical tissue density0.40.50.80.90.4-0.7
Bone: elastic displacement0.10.10.10.30.2-0.2
Bone: elastic work0.50.71.01.00.3-1.0
Bone: endosteal estimation0.00.10.2-0.40.10.1
Bone: endosteal perimeter0.30.71.40.80.3-1.2
Bone: final force0.30.50.8-0.7-0.90.4
Bone: final moment0.20.30.5-0.6-0.70.3
Bone: marrow area0.00.00.1-0.40.10.1
Bone: maximum diameter1.11.93.21.60.3-1.8
Bone: maximum force0.30.51.0-0.6-1.00.4
Bone: maximum moment0.20.30.6-0.4-0.80.2
Bone: minimum diameter0.10.20.4-0.6-0.20.4
Bone: periosteal estimation0.00.10.20.20.0-0.4
Bone: periosteal perimeter0.40.61.30.8-0.2-1.1
Bone: post-yield work0.60.91.31.20.1-1.1
Bone: stiffness0.71.11.4-1.1-1.20.8
Bone: tissue strength0.10.10.10.30.4-0.3
Bone: trabecular number1.72.73.92.00.6-2.0
Bone: trabecular spacing1.41.82.2-1.5-1.01.5
Bone: trabecular thickness0.30.40.80.50.9-0.4
Bone: trabecular tissue density0.10.20.2-0.3-0.40.5
Breakpoint value in progressive ratio session1.31.52.31.40.4-1.5
Distance traveled before self-admin0.40.40.7-0.5-0.90.5
Distance traveled after self-admin1.11.33.7-0.4-1.90.0
Delta time in closed arm before/after self-admin0.40.41.0-0.01.00.2
Delta time in open arm before/after self-admin2.22.15.8-0.1-2.4-0.6
Diff in mean of infusions in LGA sessions0.30.30.6-0.1-0.80.5
Extinction: sum of active levers before priming0.40.40.6-0.80.10.7
Active lever presses in extinction session 61.51.52.21.01.5-1.1
Delta distance traveled before/after self-admin0.70.71.90.3-1.4-0.5
Delta ambulatory time before/after self-admin0.50.51.00.4-1.0-0.6
Time in closed arm before self-admin2.12.45.7-1.0-2.40.8
Time in closed arm after self-admin1.51.64.4-0.3-2.10.4
Time in open arm before self-admin5.35.613.3-1.13.61.6
Time in open arm after self-admin0.70.81.1-1.10.80.8
Sum of active levers in priming session hrs 5-60.70.71.00.60.9-1.0
Time to tail flick, vehicle, before self-admin2.52.53.9-1.9-0.22.0
Time to tail flick, vehicle, after self-admin2.32.45.3-1.3-2.30.6
Time to tail flick, test, before self-admin0.80.81.4-0.31.21.0
Time to tail flick, test, after self-admin1.61.63.6-1.1-1.90.5
Delta time to tail flick, vehicle, before/after SA2.22.12.71.1-1.6-1.6
Delta time to tail flick, test, before/after SA0.90.82.2-0.2-1.5-0.5
Ambulatory time before self-admin0.40.40.8-0.5-0.90.5
Ambulatory time after self-admin1.41.54.1-0.6-2.00.2
Total heroin consumption0.30.30.70.40.8-0.4
Area under the delay curve0.00.00.1-0.2-0.3-0.0
Delay disc. indifference point, 0s delay0.50.60.9-0.9-0.40.9
Delay disc. indifference point, 16s delay0.00.00.1-0.3-0.10.0
Delay disc. indifference point, 2s delay0.20.20.3-0.5-0.10.5
Delay disc. indifference point, 24s delay1.61.52.51.40.0-1.6
Delay disc. indifference point, 4s delay0.10.10.2-0.50.00.3
Delay disc. indifference point, 8s delay0.10.10.2-0.0-0.4-0.0
Delay discount exponential model param0.00.00.00.10.10.1
Delay discount hyperbolic model param0.00.00.00.20.1-0.0
Fecal boli incidents, locomotor time 11.41.62.0-1.2-1.41.1
Change in fecal boli incidents, locomotor task0.50.40.9-0.9-0.00.7
Time >=10cm from walls, locomotor time 12.12.13.1-1.7-1.01.5
Bouts of movement, locomotor time 111.012.235.21.05.9-0.7
Total resting periods, locomotor time 18.08.925.40.95.0-0.8
Rest time, locomotor task time 10.10.10.2-0.50.30.4
Distance moved, locomotor task time 11.61.82.91.7-0.0-1.6
Vertical activity count, locomotor time 10.50.60.80.8-0.5-0.9
Time >=10cm from walls, locomotor time 20.10.10.2-0.4-0.2-0.1
Bouts of movement, locomotor time 22.83.07.11.22.7-0.7
Total resting periods, locomotor time 23.33.58.81.23.0-0.7
Rest time, locomotor task time 20.50.61.10.7-0.5-1.0
Distance moved, locomotor task time 20.70.81.11.10.9-0.6
Vertical activity count, locomotor time 20.20.30.50.70.1-0.5
Weight adjusted by age0.20.30.4-0.60.30.6
Seeking ratio, delayed vs. immediate footshock1.01.23.5-0.21.90.0
Locomotion in novel chamber1.11.42.3-1.5-0.51.3
Locomotion in novel chamber post-restriction0.70.81.1-0.9-0.71.0
Progressive ratio1.31.61.9-1.41.11.2
Food seeking constrained by brief footshock0.70.81.21.10.9-0.6
Seeking ratio, punishment vs. effort2.02.44.42.1-0.7-1.5
Run reversals in cocaine runway, females1.31.32.21.5-0.4-1.2
Run reversals in cocaine runway, males0.40.30.9-0.40.20.9
Latency to leave start box in cocaine runway0.80.90.91.01.0-0.9
Latency to leave start box in cocaine runway, F1.11.23.60.11.90.0
Latency to leave start box in cocaine runway, M0.40.40.90.5-0.9-0.4
Cd content in liver1.71.82.8-1.7-0.91.4
Co content in liver0.91.01.7-1.2-0.21.3
Cu content in liver2.73.35.4-2.10.12.3
Fe content in liver0.20.30.5-0.5-0.10.7
K content in liver0.20.20.4-0.1-0.70.2
Mg content in liver0.20.20.5-0.0-0.7-0.0
Mn content in liver0.00.00.1-0.10.00.3
Na content in liver0.30.30.60.80.3-0.5
Rb content in liver0.81.01.61.3-0.3-1.2
Se content in liver1.41.72.61.6-0.2-1.6
Sr content in liver1.61.42.21.40.1-1.5
Zn content in liver1.41.61.9-1.2-1.41.2