Fign

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000004679 0.1 0.05 5.5e-12 0.07 0.08 0.07 0.07 1.1e-08 4.9e-09 3.3e-08 3.0e-08
2 Brain gene expression ENSRNOG00000004679 0.03 0.02 5.0e-03 0.02 0.02 0 0.02 4.5e-03 7.7e-03 1.0e-01 1.2e-02
3 Liver gene expression ENSRNOG00000004679 0.05 0.04 6.0e-06 0.03 0.04 0.04 0.04 1.4e-04 1.2e-05 1.5e-05 1.9e-05

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail0.92.85.5-1.42.3-1.0
BMI without tail0.00.10.2-0.20.2-0.4
Body weight0.20.71.80.40.41.4
Epididymis fat weight11.326.527.2-5.25.0-5.2
Glucose0.30.50.70.9-0.40.7
Heart weight0.10.20.40.10.60.4
Left kidney weight2.05.79.12.5-1.33.0
Right kidney weight1.54.36.92.3-0.82.6
Tail length2.98.611.62.7-3.42.6
Length with tail1.45.27.12.2-1.92.7
Length without tail0.81.73.81.0-0.32.0
Liver weight, left0.10.10.20.5-0.10.4
Liver weight, right0.60.91.51.1-0.11.2
Parametrial fat weight3.77.39.0-2.42.6-3.0
Retroperitoneal fat weight3.912.816.4-3.24.0-3.4
Intraocular pressure0.81.11.51.0-1.01.2
Extensor digitorum longus weight0.41.82.31.5-0.91.5
Soleus weight0.20.50.80.9-0.30.8
Tibialis anterior weight0.20.81.1-1.11.0-0.6
Tibia length7.420.925.64.3-4.35.1
Number of licking bursts0.10.10.1-0.30.1-0.3
Food consumed during 24 hour testing period0.81.01.40.9-0.91.2
Times rat made contact with spout2.52.93.5-1.91.6-1.6
Mean time between licks in bursts1.31.82.61.6-1.11.3
Mean num. licks in bursts0.40.50.7-0.70.8-0.6
Std. dev. time between licks in bursts2.02.32.51.6-1.41.6
Water consumed over 24 hours0.40.51.10.5-0.21.0
Indifference point 0 sec0.40.61.0-0.81.0-0.4
Indifference point AUC2.93.46.91.6-2.60.8
Indifference point function ln k0.60.92.0-0.61.4-0.4
Indifference point function log k0.60.92.0-0.61.4-0.4
Delay discounting total patch changes 0 sec0.91.52.1-1.31.4-0.9
Delay discounting total patch changes 12 sec1.21.62.01.2-1.41.2
Delay discounting total patch changes 18 sec1.21.62.21.2-1.51.1
Delay discounting total patch changes 24 sec1.31.62.11.0-1.51.4
Delay discounting total patch changes 6 sec0.20.30.5-0.60.4-0.7
Delay discounting time to switch 0 sec1.01.53.1-1.01.8-0.4
Delay discounting water rate 0 sec2.23.54.01.7-2.01.9
Delay discounting water rate 12 sec1.62.42.91.7-1.31.6
Delay discounting water rate 18 sec3.04.04.41.9-2.12.0
Delay discounting water rate 24 sec0.91.31.91.0-1.40.9
Delay discounting water rate 6 sec1.92.72.81.7-1.61.7
Locomotor activity3.35.25.62.1-2.32.4
Locomotor testing distance5.69.310.33.2-2.73.2
Locomotor testing rearing7.411.613.83.7-3.03.5
Light reinforcement 10.10.10.30.3-0.50.1
Light reinforcement 20.20.30.4-0.1-0.7-0.6
Reaction time number correct0.20.20.30.50.50.4
Reaction time mean minus median0.81.01.8-1.10.2-1.3
Reaction time mean minus median AUC1.82.34.0-1.60.7-2.0
Reaction time num false alarms5.17.08.32.9-2.62.4
Reaction time num false alarms AUC5.37.48.52.9-2.62.6
Reaction time trials correct on left0.20.20.30.50.50.4
Reaction time trials on left0.20.20.30.60.50.5
Reaction time mean1.52.14.1-1.50.2-2.0
Reaction time mean AUC2.53.35.7-1.90.7-2.4
Median of all reaction times1.41.93.7-1.40.2-1.9
Reaction time omissions0.50.71.2-0.80.6-1.1
Reaction time false alarm rate3.85.46.82.3-2.62.0
Reaction time premature initiation rate0.00.10.2-0.1-0.40.0
Reaction time premature initiations0.00.00.10.2-0.10.2
Std. dev. reaction times0.60.81.6-0.8-0.2-1.3
Reaction time trials completed0.20.20.30.60.50.5
Reaction time trials AUC0.30.40.60.80.20.7
Social response proportion1.61.72.4-1.41.0-1.5
Social responses3.54.55.02.1-2.22.1
Social time0.20.20.6-0.0-0.8-0.1
Conditioned locomotion0.00.00.1-0.1-0.2-0.0
Cocaine response after cond. corrected4.75.27.1-2.12.7-2.0
Cocaine response after cond. not corrected1.01.12.0-1.01.4-0.7
Cocaine response before conditioning5.76.97.82.3-2.82.8
Saline control response0.50.70.9-0.90.9-0.7
Condit. Reinf. active minus inactive responses6.07.47.92.6-2.72.8
Condit. Reinf. active-inactive response ratio3.73.94.61.9-2.11.8
Condit. Reinf. active responses4.86.68.52.5-2.32.9
Condit. Reinf. inactive responses0.20.30.80.40.00.9
Condit. Reinf. lever presses5.57.68.62.6-2.72.9
Condit. Reinf. lever reinforcers received4.05.76.52.4-2.22.6
Pavlov. Cond. lever latency4.66.27.9-2.32.4-2.8
Pavlov. Cond. magazine entry latency0.10.10.2-0.50.00.4
Pavlov. Cond. change in total contacts2.83.84.91.7-2.21.9
Pavlov. Cond. index score1.11.42.40.8-1.11.6
Pavlov. Cond. latency score0.81.01.70.6-1.01.3
Pavlov. Cond. lever contacts3.54.96.51.9-2.12.5
Pavlov. Cond. magazine entry number0.10.10.20.30.3-0.5
Pavlov. Cond. intertrial magazine entries0.91.22.11.4-0.80.9
Pavlov. Cond. lever-magazine prob. diff.0.91.21.90.7-1.01.4
Pavlov. Cond. response bias2.33.14.71.4-1.62.2
Conditioned reinforcement - actives0.80.81.00.7-1.01.0
Conditioned reinforcement - inactives0.30.30.40.6-0.50.6
Conditioned locomotion0.10.10.40.0-0.20.6
Intermittent access intake day 1-15 change5.35.36.82.6-1.92.3
Intermittent access intake escalation4.64.55.92.4-1.82.2
Intermittent access intake escalation 21.91.82.81.7-1.11.2
Intermitt. access day 1 inactive lever presses0.30.30.9-0.10.90.0
Intermitt. access day 15 inactive lever presses0.40.40.50.7-0.50.7
Intermitt. access escalation Index0.20.20.3-0.40.5-0.4
Intermittent access day 1 total infusions0.10.10.2-0.40.20.0
Intermittent access day 15 total infusions1.82.12.71.3-1.31.6
Intermittent access terminal intake (last 3 days)1.82.02.31.3-1.41.5
Intermittent access total infusions0.70.81.20.7-0.91.1
Intermittent access day 1 locomotion0.50.50.8-0.80.9-0.3
Intermittent access day 15 total locomotion2.02.12.81.6-1.01.7
Intermittent access total locomotion0.20.20.50.40.10.7
Intermittent access standard deviation3.74.04.82.2-1.62.1
Cocaine induced anxiety3.74.25.1-2.31.8-2.0
Post-drug Anxiety0.60.60.9-1.00.8-0.6
Baseline Anxiety1.41.52.21.5-0.51.4
Lifetime Intake0.80.91.40.6-0.91.2
Incentive Sensitization - Responses2.32.33.21.4-1.81.4
Incentive Sensitization - Breakpoint2.42.43.21.5-1.81.4
Progressive ratio test 1 active lever presses0.40.41.10.1-0.51.0
Progressive ratio test 1 breakpoint0.70.71.60.4-0.71.3
Progressive ratio test 1 inactive lever presses0.20.20.50.10.10.7
Progressive ratio test 2 active lever presses1.81.92.81.1-1.71.3
Progressive ratio test 2 breakpoint2.22.43.01.4-1.71.6
Progressive ratio test 2 inactive lever presses1.21.42.30.9-1.51.1
Total sessions with >9 infusions0.30.41.0-0.1-0.41.0
Short access day 1 total inactive lever presses0.10.10.2-0.1-0.30.4
Short access day 10 total inactive lever presses0.10.10.30.50.20.2
Short access day 1 total infusions0.70.71.10.2-1.01.0
Short access day 10 total infusions1.11.32.70.8-0.61.7
Short access total infusions0.40.51.00.2-0.61.0
Short access day 1 locomotion0.40.41.00.3-0.31.0
Short access day 10 total locomotion1.11.21.5-1.21.2-0.8
Short access total locomotion0.30.30.5-0.70.70.1
Compulsive drug intake3.23.14.0-1.62.0-1.6
One hour access (0.3 mA shock)1.21.51.81.0-1.31.2
One hour access (shock baseline)2.12.43.41.2-1.81.5
Number of responses in last shaping day0.40.41.1-0.2-1.00.4
Context. condit. distance diff. score0.10.20.20.3-0.50.5
Locomotion velocity, session 10.20.20.40.4-0.60.1
Locomotion distance, session 10.10.20.50.1-0.70.0
Locomotion velocity, session 20.70.81.6-0.90.3-1.2
Locomotion distance, session 20.91.21.80.9-1.31.1
Locomotion velocity, session 30.40.50.8-0.60.5-0.9
Locomotion distance, session 30.00.00.00.1-0.2-0.1
Stereotopy head waving bouts, day 30.50.61.40.5-0.51.2
Stereotopy head waving duration, day 30.60.81.20.6-0.91.1
Locomotion velocity, session 70.10.20.30.6-0.30.2
Locomotion distance, session 70.20.30.50.7-0.40.6
Stereotopy head waving bouts, day 70.20.20.50.0-0.70.4
Stereotopy head waving duration, day 70.30.30.60.3-0.80.6
Locomotion velocity, session 80.20.20.40.3-0.60.2
Locomotion distance, session 80.10.10.30.1-0.50.4
Degree of sensitization distance0.00.00.1-0.10.30.3
Degree of sensitization stereotypy0.50.61.1-1.00.4-0.7
Condit. Reinf. active minus inactive responses2.32.63.31.5-1.51.8
Condit. Reinf. active-inactive response ratio0.40.40.60.6-0.30.8
Condit. Reinf. active responses4.45.35.62.4-2.32.3
Condit. Reinf. inactive responses3.84.55.72.4-2.01.9
Incentive salience index mean2.73.33.71.7-1.81.9
Condit. Reinf. lever presses0.50.60.70.8-0.70.9
Time in familiar zone, hab. session 11.11.11.90.9-1.40.7
Time in novel zone, hab. session 12.02.03.1-1.21.8-1.2
Total zone transitions, hab. session 12.23.13.71.5-1.91.8
Total locomotion distance, hab. session 13.34.75.52.2-2.32.0
Locomotion velocity, hab. session 12.73.94.42.0-2.11.8
Time in familiar zone, hab. session 21.11.11.4-1.20.8-1.1
Time in novel zone, hab. session 20.50.50.70.7-0.40.9
Total zone transitions, hab. session 21.31.72.20.9-1.51.5
Total locomotion distance, hab. session 20.30.40.60.4-0.80.6
Locomotion velocity, hab. session 20.30.50.70.5-0.90.6
Novel to familiar place preference ratio0.91.01.6-1.11.3-0.4
Novelty place preference1.21.32.0-1.31.4-0.5
Time in novel zone, NPP test1.21.32.0-1.21.4-0.5
Total zone transitions, NPP test0.40.61.20.3-1.10.7
Total locomotion distance, NPP test1.21.72.81.0-1.71.1
Locomotion velocity, NPP test1.31.82.81.1-1.71.2
Pavlov. Cond. lever latency0.20.30.6-0.10.5-0.7
Pavlov. Cond. magazine entry latency0.00.10.1-0.10.30.2
Pavlov. Cond. change in total contacts0.60.70.80.6-0.90.9
Pavlov. Cond. index score0.40.50.80.5-0.60.9
Pavlov. Cond. latency score0.40.50.90.4-0.61.0
Pavlov. Cond. lever contacts0.50.51.00.4-0.71.0
Pavlov. Cond. magazine entry number0.10.10.2-0.40.4-0.3
Pavlov. Cond. intertrial magazine entries2.93.53.92.0-1.71.9
Pavlov. Cond. lever-magazine prob. diff.0.40.50.90.5-0.50.9
Pavlov. Cond. response bias0.10.10.20.2-0.20.4
Bone: apparent density0.10.20.40.1-0.60.3
Bone surface1.22.03.01.2-1.71.3
Bone volume0.40.71.00.6-1.00.9
Bone: connectivity density0.20.30.80.1-0.90.2
Bone: cortical apparent density0.00.00.10.2-0.30.1
Bone: cortical area3.55.37.22.2-2.02.7
Bone: cortical porosity1.41.52.11.1-1.01.4
Bone: cortical porosity3.03.24.01.8-1.62.0
Bone: cortical thickness0.81.42.50.9-0.91.6
Bone: cortical thickness2.32.74.21.4-1.42.1
Bone: cortical tissue density0.00.00.00.0-0.2-0.1
Bone: elastic displacement1.92.12.7-1.41.7-1.3
Bone: elastic work0.50.61.1-0.71.0-0.6
Bone: endosteal estimation1.83.84.32.0-2.11.7
Bone: endosteal perimeter3.77.59.03.0-2.72.5
Bone: final force3.35.55.72.4-2.42.3
Bone: final moment2.84.75.12.3-2.12.1
Bone: marrow area1.83.94.42.0-2.11.8
Bone: maximum diameter2.95.46.52.2-2.22.6
Bone: maximum force3.66.26.92.6-2.32.5
Bone: maximum moment3.35.76.62.6-2.12.4
Bone: minimum diameter1.73.23.71.9-1.61.9
Bone: periosteal estimation3.36.87.52.6-2.42.7
Bone: periosteal perimeter5.49.09.93.1-2.73.1
Bone: post-yield work1.62.12.81.7-1.21.4
Bone: stiffness5.58.79.23.0-2.83.0
Bone: tissue strength0.70.70.91.0-0.80.7
Bone: trabecular number0.10.10.3-0.5-0.2-0.4
Bone: trabecular spacing0.10.20.5-0.20.70.0
Bone: trabecular thickness0.81.01.11.0-1.10.8
Bone: trabecular tissue density2.43.33.31.8-1.81.8
Breakpoint value in progressive ratio session1.51.62.0-1.41.0-1.4
Distance traveled before self-admin5.25.58.22.2-1.92.9
Distance traveled after self-admin4.04.55.72.4-1.72.2
Delta time in closed arm before/after self-admin0.40.40.6-0.70.8-0.4
Delta time in open arm before/after self-admin0.30.30.60.8-0.30.5
Diff in mean of infusions in LGA sessions12.614.116.7-4.13.4-3.8
Extinction: sum of active levers before priming0.60.60.90.9-0.40.9
Active lever presses in extinction session 60.20.20.5-0.20.70.4
Delta distance traveled before/after self-admin0.40.40.8-0.20.5-0.9
Delta ambulatory time before/after self-admin0.20.30.50.7-0.50.2
Time in closed arm before self-admin0.10.10.2-0.20.3-0.5
Time in closed arm after self-admin0.10.10.10.4-0.20.4
Time in open arm before self-admin0.60.61.2-1.1-0.3-0.7
Time in open arm after self-admin0.00.00.1-0.40.1-0.1
Sum of active levers in priming session hrs 5-62.52.43.6-1.41.9-1.4
Time to tail flick, vehicle, before self-admin2.32.32.8-1.51.7-1.4
Time to tail flick, vehicle, after self-admin4.85.26.6-1.92.3-2.6
Time to tail flick, test, before self-admin1.61.62.2-1.11.1-1.5
Time to tail flick, test, after self-admin0.10.10.2-0.30.4-0.4
Delta time to tail flick, vehicle, before/after SA0.10.10.20.2-0.2-0.5
Delta time to tail flick, test, before/after SA0.20.20.40.1-0.60.3
Ambulatory time before self-admin7.37.710.42.6-2.43.2
Ambulatory time after self-admin3.84.25.22.3-1.82.1
Total heroin consumption1.61.93.0-1.31.7-1.0
Area under the delay curve0.20.20.3-0.60.2-0.4
Delay disc. indifference point, 0s delay0.30.30.70.8-0.10.6
Delay disc. indifference point, 16s delay0.20.20.5-0.70.4-0.3
Delay disc. indifference point, 2s delay0.10.10.30.6-0.1-0.1
Delay disc. indifference point, 24s delay0.20.20.4-0.3-0.6-0.2
Delay disc. indifference point, 4s delay0.50.50.8-0.70.6-0.9
Delay disc. indifference point, 8s delay0.40.40.8-0.90.4-0.5
Delay discount exponential model param0.30.30.50.7-0.30.6
Delay discount hyperbolic model param0.20.20.30.5-0.20.5
Fecal boli incidents, locomotor time 10.50.61.0-0.70.4-1.0
Change in fecal boli incidents, locomotor task1.61.52.01.0-1.21.4
Time >=10cm from walls, locomotor time 10.20.20.40.3-0.40.6
Bouts of movement, locomotor time 18.29.111.4-3.42.6-3.0
Total resting periods, locomotor time 18.08.911.2-3.32.5-3.0
Rest time, locomotor task time 13.84.14.8-2.11.7-2.2
Distance moved, locomotor task time 14.04.45.82.4-1.42.3
Vertical activity count, locomotor time 10.50.50.91.0-0.30.7
Time >=10cm from walls, locomotor time 21.81.92.41.5-0.91.5
Bouts of movement, locomotor time 28.49.09.6-3.03.1-2.9
Total resting periods, locomotor time 210.511.211.8-3.43.3-3.3
Rest time, locomotor task time 22.63.03.5-1.91.5-1.8
Distance moved, locomotor task time 23.03.44.62.1-1.12.1
Vertical activity count, locomotor time 20.10.10.30.60.3-0.0
Weight adjusted by age0.60.71.6-0.60.4-1.3
Seeking ratio, delayed vs. immediate footshock0.30.30.60.5-0.40.8
Locomotion in novel chamber0.40.50.9-1.00.7-0.4
Locomotion in novel chamber post-restriction0.00.10.2-0.40.10.1
Progressive ratio0.10.20.2-0.30.40.5
Food seeking constrained by brief footshock0.50.60.8-0.90.6-0.9
Seeking ratio, punishment vs. effort0.10.10.3-0.00.1-0.5
Run reversals in cocaine runway, females0.20.20.5-0.00.7-0.1
Run reversals in cocaine runway, males0.80.81.2-0.90.5-1.1
Latency to leave start box in cocaine runway0.00.00.0-0.2-0.2-0.2
Latency to leave start box in cocaine runway, F0.50.60.80.5-0.90.8
Latency to leave start box in cocaine runway, M1.61.62.1-1.31.0-1.4
Cd content in liver1.01.11.4-0.91.1-1.2
Co content in liver0.80.91.50.8-0.81.2
Cu content in liver0.40.50.90.6-1.00.4
Fe content in liver2.42.93.4-1.71.6-1.8
K content in liver2.92.93.31.8-1.81.5
Mg content in liver2.62.73.21.8-1.61.5
Mn content in liver7.18.29.22.9-3.02.6
Na content in liver5.35.76.02.3-2.32.5
Rb content in liver1.41.82.11.2-1.41.4
Se content in liver0.70.80.9-0.90.9-0.9
Sr content in liver1.11.01.40.9-0.81.2
Zn content in liver0.20.20.5-0.70.2-0.2