Asnsd1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000003942 0.15 0.09 1.1e-16 0.08 0.07 0.06 0.08 1.7e-09 1.1e-08 2.8e-07 8.8e-09
2 Brain gene expression ENSRNOG00000003942 0.05 0.04 1.3e-04 0.03 0.04 0.02 0.04 2.2e-03 2.1e-04 4.6e-03 2.3e-04
3 Liver intron excision ratio chr9:48126949:48128543 0.03 0.03 1.2e-03 0 0 0.01 0 1.6e-01 1.1e-01 6.7e-02 2.9e-01
4 Liver intron excision ratio chr9:48126954:48128543 0.04 0.03 9.2e-04 0 0.01 0.01 0 1.3e-01 7.1e-02 5.4e-02 2.0e-01

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail2.27.015.42.63.91.7-1.7
BMI without tail0.20.41.40.21.2-0.10.1
Body weight0.00.20.30.40.30.5-0.5
Epididymis fat weight0.20.40.60.2-0.60.8-0.8
Glucose0.71.01.8-0.60.3-1.31.4
Heart weight0.10.10.3-0.2-0.6-0.20.2
Left kidney weight0.00.10.10.30.10.4-0.3
Right kidney weight0.51.41.61.20.91.3-1.3
Tail length1.85.410.9-2.5-3.3-1.51.5
Length with tail1.03.610.7-1.7-3.3-0.60.6
Length without tail0.91.92.91.40.21.7-1.7
Liver weight, left1.22.03.21.10.51.8-1.8
Liver weight, right0.20.40.70.4-0.00.8-0.8
Parametrial fat weight0.00.10.10.10.3-0.30.3
Retroperitoneal fat weight0.61.92.61.60.81.4-1.5
Intraocular pressure0.20.30.5-0.50.1-0.70.7
Extensor digitorum longus weight9.237.141.86.55.76.0-6.1
Soleus weight1.85.36.62.31.72.6-2.6
Tibialis anterior weight3.913.616.24.03.93.4-3.4
Tibia length0.82.16.7-0.7-2.60.8-0.8
Number of licking bursts1.82.13.4-1.3-0.4-1.81.8
Food consumed during 24 hour testing period0.30.40.70.3-0.30.8-0.8
Times rat made contact with spout1.82.03.2-1.2-0.5-1.81.8
Mean time between licks in bursts3.04.24.92.21.92.0-2.0
Mean num. licks in bursts0.40.40.60.70.30.7-0.8
Std. dev. time between licks in bursts3.64.37.42.32.71.5-1.5
Water consumed over 24 hours0.10.20.60.20.8-0.20.2
Indifference point 0 sec1.72.75.61.72.41.1-1.0
Indifference point AUC0.80.91.30.90.61.1-1.1
Indifference point function ln k0.40.61.0-0.30.4-1.01.0
Indifference point function log k0.40.61.0-0.30.4-1.01.0
Delay discounting total patch changes 0 sec1.82.95.81.82.41.2-1.1
Delay discounting total patch changes 12 sec0.60.80.90.80.91.0-0.9
Delay discounting total patch changes 18 sec0.91.22.11.11.50.9-0.9
Delay discounting total patch changes 24 sec1.01.21.31.11.11.1-1.1
Delay discounting total patch changes 6 sec1.82.74.91.72.21.2-1.2
Delay discounting time to switch 0 sec0.61.01.3-1.0-1.2-0.90.8
Delay discounting water rate 0 sec0.71.01.61.01.30.9-0.9
Delay discounting water rate 12 sec0.20.20.4-0.20.4-0.60.6
Delay discounting water rate 18 sec0.60.81.1-0.9-0.4-1.01.0
Delay discounting water rate 24 sec0.00.00.0-0.1-0.00.1-0.0
Delay discounting water rate 6 sec0.20.30.60.10.8-0.50.5
Locomotor activity0.10.20.30.50.30.4-0.4
Locomotor testing distance0.40.70.9-0.9-0.6-0.90.9
Locomotor testing rearing0.81.32.1-1.1-0.1-1.41.4
Light reinforcement 14.58.29.63.13.12.6-2.6
Light reinforcement 20.91.21.51.21.21.0-1.0
Reaction time number correct1.01.42.21.21.51.0-1.0
Reaction time mean minus median1.51.93.4-1.5-1.9-1.01.0
Reaction time mean minus median AUC1.21.62.5-1.4-1.6-1.01.0
Reaction time num false alarms4.15.76.82.62.62.2-2.1
Reaction time num false alarms AUC5.47.58.93.02.82.6-2.6
Reaction time trials correct on left1.01.42.21.21.51.0-1.0
Reaction time trials on left0.91.32.01.11.41.0-1.0
Reaction time mean3.95.410.6-2.4-3.3-1.61.6
Reaction time mean AUC3.64.89.1-2.3-3.0-1.61.6
Median of all reaction times3.95.310.0-2.4-3.2-1.71.7
Reaction time omissions1.92.52.9-1.7-1.2-1.71.7
Reaction time false alarm rate2.33.34.22.01.81.7-1.7
Reaction time premature initiation rate0.00.00.1-0.3-0.2-0.0-0.0
Reaction time premature initiations0.10.20.30.20.50.5-0.5
Std. dev. reaction times3.75.19.4-2.4-3.1-1.61.6
Reaction time trials completed0.91.32.01.11.41.0-1.0
Reaction time trials AUC0.81.11.91.11.40.9-0.9
Social response proportion0.40.40.7-0.7-0.8-0.50.5
Social responses0.10.10.10.00.10.4-0.4
Social time1.41.82.1-1.4-1.2-1.41.4
Conditioned locomotion0.10.10.2-0.4-0.3-0.30.3
Cocaine response after cond. corrected1.21.42.01.10.51.4-1.4
Cocaine response after cond. not corrected1.51.62.81.0-0.11.7-1.7
Cocaine response before conditioning0.20.30.50.1-0.70.5-0.5
Saline control response0.30.40.8-0.5-0.0-0.90.9
Condit. Reinf. active minus inactive responses1.41.74.3-1.3-2.1-0.70.7
Condit. Reinf. active-inactive response ratio2.02.13.8-1.5-2.0-1.11.1
Condit. Reinf. active responses0.20.30.9-0.3-0.90.1-0.1
Condit. Reinf. inactive responses0.60.71.00.80.51.0-1.0
Condit. Reinf. lever presses0.00.00.1-0.1-0.20.2-0.2
Condit. Reinf. lever reinforcers received0.20.20.7-0.2-0.80.3-0.3
Pavlov. Cond. lever latency0.10.10.30.40.60.0-0.1
Pavlov. Cond. magazine entry latency0.20.20.4-0.5-0.7-0.00.0
Pavlov. Cond. change in total contacts0.70.91.7-1.1-1.3-0.60.6
Pavlov. Cond. index score0.20.30.9-0.6-0.9-0.00.0
Pavlov. Cond. latency score0.20.30.8-0.6-0.90.1-0.0
Pavlov. Cond. lever contacts0.20.30.7-0.6-0.9-0.20.3
Pavlov. Cond. magazine entry number0.60.71.31.01.10.4-0.5
Pavlov. Cond. intertrial magazine entries0.60.71.41.01.20.5-0.5
Pavlov. Cond. lever-magazine prob. diff.0.10.20.4-0.4-0.60.2-0.2
Pavlov. Cond. response bias0.20.31.0-0.5-1.00.1-0.1
Conditioned reinforcement - actives0.20.20.3-0.5-0.5-0.20.2
Conditioned reinforcement - inactives0.10.20.5-0.2-0.70.2-0.1
Conditioned locomotion3.94.75.42.32.12.1-2.1
Intermittent access intake day 1-15 change0.10.10.20.10.4-0.0-0.0
Intermittent access intake escalation0.10.10.1-0.3-0.0-0.30.3
Intermittent access intake escalation 20.20.20.3-0.5-0.3-0.50.4
Intermitt. access day 1 inactive lever presses0.10.20.30.30.50.4-0.4
Intermitt. access day 15 inactive lever presses0.10.20.3-0.3-0.6-0.30.3
Intermitt. access escalation Index0.20.20.3-0.10.5-0.50.5
Intermittent access day 1 total infusions1.21.41.5-1.2-1.1-1.21.2
Intermittent access day 15 total infusions1.01.11.4-1.1-0.6-1.21.2
Intermittent access terminal intake (last 3 days)0.40.40.6-0.8-0.2-0.80.8
Intermittent access total infusions0.80.91.1-1.0-0.8-1.01.1
Intermittent access day 1 locomotion0.20.20.2-0.5-0.2-0.50.5
Intermittent access day 15 total locomotion0.00.00.0-0.00.00.0-0.0
Intermittent access total locomotion0.10.10.2-0.20.2-0.40.4
Intermittent access standard deviation0.10.10.20.40.30.4-0.4
Cocaine induced anxiety3.84.35.62.32.41.8-1.8
Post-drug Anxiety0.70.81.70.91.30.6-0.6
Baseline Anxiety3.53.74.8-2.2-2.1-1.61.6
Lifetime Intake0.20.20.3-0.4-0.4-0.50.5
Incentive Sensitization - Responses0.40.40.6-0.7-0.8-0.40.5
Incentive Sensitization - Breakpoint0.30.30.4-0.6-0.6-0.40.4
Progressive ratio test 1 active lever presses0.00.00.0-0.10.00.2-0.1
Progressive ratio test 1 breakpoint0.10.10.10.20.20.4-0.3
Progressive ratio test 1 inactive lever presses0.20.30.40.60.30.5-0.5
Progressive ratio test 2 active lever presses0.30.30.5-0.6-0.7-0.40.4
Progressive ratio test 2 breakpoint0.30.30.4-0.7-0.5-0.60.6
Progressive ratio test 2 inactive lever presses0.20.20.2-0.4-0.5-0.40.4
Total sessions with >9 infusions2.62.93.41.81.31.8-1.8
Short access day 1 total inactive lever presses0.50.60.80.90.70.7-0.7
Short access day 10 total inactive lever presses0.10.10.2-0.1-0.5-0.10.1
Short access day 1 total infusions0.80.91.30.90.41.2-1.1
Short access day 10 total infusions1.11.21.7-1.0-0.6-1.31.3
Short access total infusions0.10.10.20.40.30.3-0.3
Short access day 1 locomotion1.41.51.91.30.81.4-1.4
Short access day 10 total locomotion0.00.10.1-0.1-0.20.3-0.3
Short access total locomotion2.62.63.21.81.11.8-1.7
Compulsive drug intake0.00.00.1-0.00.1-0.30.2
One hour access (0.3 mA shock)1.11.31.6-1.2-1.0-1.21.1
One hour access (shock baseline)0.91.11.2-1.1-1.0-1.01.0
Number of responses in last shaping day0.20.20.30.60.50.3-0.3
Context. condit. distance diff. score0.91.11.9-0.50.5-1.41.4
Locomotion velocity, session 10.10.10.1-0.4-0.0-0.40.4
Locomotion distance, session 10.30.40.40.60.70.5-0.5
Locomotion velocity, session 21.31.62.31.31.51.1-1.1
Locomotion distance, session 21.11.61.71.31.21.3-1.2
Locomotion velocity, session 30.00.10.20.20.40.00.0
Locomotion distance, session 30.10.20.2-0.10.4-0.50.5
Stereotopy head waving bouts, day 30.40.50.60.70.80.6-0.6
Stereotopy head waving duration, day 30.00.00.0-0.00.10.0-0.0
Locomotion velocity, session 71.82.02.71.30.81.6-1.7
Locomotion distance, session 71.41.82.31.30.91.5-1.5
Stereotopy head waving bouts, day 70.40.40.5-0.6-0.6-0.70.7
Stereotopy head waving duration, day 70.60.71.0-0.9-1.0-0.80.8
Locomotion velocity, session 80.10.10.20.00.4-0.40.4
Locomotion distance, session 80.30.51.50.61.2-0.10.1
Degree of sensitization distance1.41.42.40.90.21.5-1.5
Degree of sensitization stereotypy0.60.70.8-0.8-0.7-0.90.9
Condit. Reinf. active minus inactive responses3.64.06.6-2.2-2.6-1.51.5
Condit. Reinf. active-inactive response ratio2.12.33.7-1.7-1.9-1.21.2
Condit. Reinf. active responses1.92.35.0-1.7-2.2-0.90.8
Condit. Reinf. inactive responses0.20.20.40.2-0.10.6-0.6
Incentive salience index mean3.33.95.6-2.1-2.4-1.71.6
Condit. Reinf. lever presses1.52.02.3-1.4-1.3-1.51.5
Time in familiar zone, hab. session 10.30.20.4-0.30.3-0.60.6
Time in novel zone, hab. session 13.23.24.6-1.9-2.1-1.51.5
Total zone transitions, hab. session 10.50.71.20.70.11.1-1.1
Total locomotion distance, hab. session 11.01.52.60.8-0.31.6-1.6
Locomotion velocity, hab. session 11.92.84.41.40.52.1-2.1
Time in familiar zone, hab. session 20.10.20.3-0.2-0.2-0.50.5
Time in novel zone, hab. session 20.30.30.5-0.7-0.3-0.60.6
Total zone transitions, hab. session 20.00.00.1-0.10.0-0.30.2
Total locomotion distance, hab. session 20.10.10.2-0.0-0.40.4-0.4
Locomotion velocity, hab. session 20.20.30.50.3-0.20.7-0.7
Novel to familiar place preference ratio1.11.21.8-1.1-1.4-0.90.9
Novelty place preference1.31.41.5-1.2-1.2-1.11.1
Time in novel zone, NPP test1.71.81.9-1.4-1.4-1.31.3
Total zone transitions, NPP test0.20.30.50.50.70.4-0.4
Total locomotion distance, NPP test0.20.30.50.2-0.10.7-0.7
Locomotion velocity, NPP test0.40.61.00.60.31.0-1.0
Pavlov. Cond. lever latency2.43.13.71.81.91.7-1.6
Pavlov. Cond. magazine entry latency2.02.64.2-1.7-2.0-1.31.3
Pavlov. Cond. change in total contacts2.12.22.7-1.6-1.6-1.41.4
Pavlov. Cond. index score3.24.14.4-2.1-2.1-2.01.9
Pavlov. Cond. latency score3.03.84.3-2.0-2.1-1.91.8
Pavlov. Cond. lever contacts2.32.73.1-1.7-1.4-1.81.7
Pavlov. Cond. magazine entry number4.25.37.12.42.72.0-2.0
Pavlov. Cond. intertrial magazine entries0.00.00.10.20.20.2-0.2
Pavlov. Cond. lever-magazine prob. diff.2.53.13.3-1.8-1.8-1.71.7
Pavlov. Cond. response bias3.13.84.0-2.0-1.9-1.91.9
Bone: apparent density2.33.95.1-2.2-2.3-1.71.7
Bone surface0.20.30.6-0.2-0.80.5-0.5
Bone volume0.81.33.2-1.3-1.8-0.50.5
Bone: connectivity density0.20.30.4-0.6-0.6-0.40.4
Bone: cortical apparent density5.06.610.32.83.22.0-2.0
Bone: cortical area0.81.32.01.00.51.4-1.4
Bone: cortical porosity1.01.11.7-1.1-1.3-0.90.9
Bone: cortical porosity0.90.92.0-1.0-1.4-0.70.6
Bone: cortical thickness1.01.72.61.41.61.1-1.1
Bone: cortical thickness0.10.10.20.30.10.4-0.4
Bone: cortical tissue density5.06.510.22.83.22.0-2.0
Bone: elastic displacement1.92.23.2-1.4-0.7-1.81.8
Bone: elastic work0.70.91.9-1.1-1.4-0.50.5
Bone: endosteal estimation0.71.54.4-0.7-2.10.7-0.7
Bone: endosteal perimeter0.30.61.9-0.5-1.40.4-0.4
Bone: final force1.01.62.80.8-0.21.7-1.7
Bone: final moment0.91.42.50.80.01.6-1.6
Bone: marrow area0.61.44.0-0.6-2.00.7-0.7
Bone: maximum diameter0.20.30.60.40.20.8-0.8
Bone: maximum force1.01.83.20.5-0.81.8-1.8
Bone: maximum moment0.91.52.80.6-0.51.7-1.7
Bone: minimum diameter0.71.22.20.7-0.21.5-1.5
Bone: periosteal estimation0.51.01.6-0.1-1.31.1-1.1
Bone: periosteal perimeter0.20.30.7-0.3-0.80.4-0.4
Bone: post-yield work0.30.50.70.1-0.80.7-0.8
Bone: stiffness1.32.13.80.8-0.51.9-2.0
Bone: tissue strength0.10.10.10.20.10.3-0.3
Bone: trabecular number0.81.32.0-1.2-1.4-0.90.9
Bone: trabecular spacing1.01.21.41.20.91.2-1.2
Bone: trabecular thickness5.36.48.1-2.8-2.6-2.42.4
Bone: trabecular tissue density0.00.00.10.0-0.30.2-0.2
Breakpoint value in progressive ratio session0.40.40.8-0.6-0.9-0.50.5
Distance traveled before self-admin0.91.03.5-0.7-1.90.1-0.1
Distance traveled after self-admin0.20.20.50.1-0.70.3-0.3
Delta time in closed arm before/after self-admin1.31.31.31.11.11.2-1.2
Delta time in open arm before/after self-admin2.42.33.6-1.5-1.9-1.21.2
Diff in mean of infusions in LGA sessions1.41.62.1-1.1-1.5-1.21.2
Extinction: sum of active levers before priming0.70.71.5-0.8-1.2-0.50.5
Active lever presses in extinction session 60.50.50.6-0.7-0.8-0.70.7
Delta distance traveled before/after self-admin0.40.40.90.71.00.3-0.3
Delta ambulatory time before/after self-admin0.50.51.10.81.00.5-0.5
Time in closed arm before self-admin2.22.53.8-1.7-1.9-1.41.3
Time in closed arm after self-admin0.00.00.1-0.0-0.30.2-0.2
Time in open arm before self-admin1.01.12.31.01.50.7-0.7
Time in open arm after self-admin1.51.72.8-1.3-1.7-1.01.0
Sum of active levers in priming session hrs 5-61.21.12.3-1.0-1.5-0.80.8
Time to tail flick, vehicle, before self-admin0.20.20.3-0.10.5-0.50.4
Time to tail flick, vehicle, after self-admin0.60.60.8-0.7-0.7-0.90.9
Time to tail flick, test, before self-admin2.02.02.61.61.41.3-1.3
Time to tail flick, test, after self-admin2.42.53.11.71.81.3-1.4
Delta time to tail flick, vehicle, before/after SA0.20.20.7-0.3-0.9-0.20.2
Delta time to tail flick, test, before/after SA0.10.10.1-0.30.1-0.30.3
Ambulatory time before self-admin0.90.93.0-0.8-1.7-0.10.1
Ambulatory time after self-admin0.20.30.40.50.00.6-0.6
Total heroin consumption0.70.91.0-0.8-0.9-1.01.0
Area under the delay curve0.10.10.1-0.4-0.2-0.30.3
Delay disc. indifference point, 0s delay0.00.00.0-0.1-0.1-0.10.1
Delay disc. indifference point, 16s delay0.80.81.1-1.0-1.0-0.80.7
Delay disc. indifference point, 2s delay0.00.00.0-0.0-0.00.0-0.1
Delay disc. indifference point, 24s delay0.50.50.8-0.6-0.2-0.90.9
Delay disc. indifference point, 4s delay0.20.20.40.40.60.3-0.4
Delay disc. indifference point, 8s delay0.20.20.5-0.5-0.7-0.30.2
Delay discount exponential model param0.10.10.20.40.20.4-0.4
Delay discount hyperbolic model param0.00.00.00.2-0.00.2-0.1
Fecal boli incidents, locomotor time 10.00.00.00.00.1-0.10.2
Change in fecal boli incidents, locomotor task0.30.30.5-0.3-0.0-0.70.7
Time >=10cm from walls, locomotor time 11.01.01.41.00.51.2-1.1
Bouts of movement, locomotor time 11.11.21.71.31.30.9-0.9
Total resting periods, locomotor time 11.82.02.51.61.61.2-1.2
Rest time, locomotor task time 10.20.30.40.00.6-0.60.6
Distance moved, locomotor task time 10.20.20.3-0.6-0.5-0.30.2
Vertical activity count, locomotor time 10.10.10.30.1-0.00.5-0.5
Time >=10cm from walls, locomotor time 21.41.52.0-1.3-1.4-1.11.1
Bouts of movement, locomotor time 23.13.34.62.02.21.5-1.6
Total resting periods, locomotor time 22.93.14.61.92.21.4-1.4
Rest time, locomotor task time 20.30.30.90.31.0-0.40.4
Distance moved, locomotor task time 20.30.30.8-0.6-0.9-0.0-0.0
Vertical activity count, locomotor time 20.00.00.10.10.00.2-0.3
Weight adjusted by age1.71.93.11.20.21.8-1.7
Seeking ratio, delayed vs. immediate footshock0.91.02.3-1.0-1.5-0.60.6
Locomotion in novel chamber4.35.36.42.21.82.5-2.5
Locomotion in novel chamber post-restriction3.94.65.42.21.72.3-2.3
Progressive ratio0.20.20.40.30.30.6-0.6
Food seeking constrained by brief footshock0.60.71.20.70.31.1-1.1
Seeking ratio, punishment vs. effort0.20.20.30.50.10.5-0.5
Run reversals in cocaine runway, females2.42.43.11.60.91.8-1.7
Run reversals in cocaine runway, males1.61.51.71.21.11.3-1.3
Latency to leave start box in cocaine runway4.65.08.22.32.91.8-1.8
Latency to leave start box in cocaine runway, F1.92.14.41.52.10.9-0.9
Latency to leave start box in cocaine runway, M3.83.73.92.01.81.9-1.9
Cd content in liver0.30.30.40.1-0.50.6-0.7
Co content in liver2.02.33.0-1.5-1.0-1.71.7
Cu content in liver2.12.63.6-1.7-1.9-1.41.4
Fe content in liver2.93.54.8-2.0-2.2-1.61.6
K content in liver3.23.24.12.01.61.8-1.8
Mg content in liver1.31.31.81.31.21.0-1.0
Mn content in liver0.10.20.40.40.7-0.20.2
Na content in liver0.10.10.20.40.40.2-0.2
Rb content in liver2.73.44.02.01.51.9-1.9
Se content in liver0.20.20.30.50.40.5-0.5
Sr content in liver0.00.00.1-0.10.2-0.20.2
Zn content in liver0.30.30.60.60.80.4-0.5