Endov

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000003699 0.04 0.04 1.7e-03 0.02 0.01 0.02 0.01 2.0e-03 1.2e-02 6.5e-03 9.9e-03
2 Liver gene expression ENSRNOG00000003699 0.06 0.04 6.3e-06 0.04 0.05 0.06 0.05 9.3e-06 5.2e-06 8.2e-07 2.8e-06
3 PL gene expression ENSRNOG00000003699 0.04 0.03 2.5e-03 0.04 0.04 0.04 0.04 3.1e-04 5.9e-04 4.9e-04 2.5e-04
4 PL intron excision ratio chr10:104760201:104768396 0.03 0.02 9.9e-03 0.02 0.01 0 -0 1.2e-02 4.7e-02 1.6e-01 4.7e-01

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail0.62.14.80.9-0.5-2.21.6
BMI without tail4.59.419.21.3-1.7-4.43.7
Body weight3.012.724.4-2.0-3.5-3.24.9
Epididymis fat weight1.02.44.40.1-0.8-2.12.1
Glucose2.53.87.90.50.92.8-2.5
Heart weight0.40.50.90.6-0.9-0.60.7
Left kidney weight1.02.98.0-2.8-1.21.30.6
Right kidney weight0.61.64.3-2.1-0.91.10.5
Tail length4.413.225.0-1.2-4.0-3.25.0
Length with tail2.79.914.5-3.4-3.5-1.03.8
Length without tail1.83.99.8-3.1-0.82.2-0.2
Liver weight, left0.81.23.6-1.9-0.11.2-0.1
Liver weight, right2.54.28.4-1.7-2.9-0.22.3
Parametrial fat weight1.42.75.6-0.3-2.4-1.02.1
Retroperitoneal fat weight3.812.525.3-1.0-3.2-3.75.0
Intraocular pressure0.81.13.01.7-0.5-1.00.6
Extensor digitorum longus weight0.73.06.42.50.3-2.30.3
Soleus weight1.54.410.00.8-3.2-1.12.4
Tibialis anterior weight0.10.41.11.10.1-0.5-0.1
Tibia length8.323.440.3-6.3-4.9-1.05.3
Number of licking bursts0.10.10.3-0.2-0.3-0.40.5
Food consumed during 24 hour testing period0.70.81.6-0.30.0-1.31.3
Times rat made contact with spout1.61.84.90.5-2.2-0.21.4
Mean time between licks in bursts1.01.42.30.31.41.1-1.5
Mean num. licks in bursts0.50.61.11.0-1.0-0.10.5
Std. dev. time between licks in bursts1.21.54.21.0-0.1-2.00.9
Water consumed over 24 hours0.20.20.50.2-0.60.70.1
Indifference point 0 sec1.01.74.12.0-1.1-0.80.9
Indifference point AUC0.00.10.10.30.1-0.20.2
Indifference point function ln k0.81.21.91.41.10.2-1.2
Indifference point function log k0.81.21.91.41.10.2-1.2
Delay discounting total patch changes 0 sec1.32.25.82.4-0.8-1.10.9
Delay discounting total patch changes 12 sec1.21.74.32.1-1.4-0.10.5
Delay discounting total patch changes 18 sec0.91.23.41.80.2-1.10.2
Delay discounting total patch changes 24 sec1.31.72.70.3-1.4-1.41.6
Delay discounting total patch changes 6 sec1.42.14.51.6-2.1-0.21.2
Delay discounting time to switch 0 sec0.60.91.7-0.30.51.3-1.2
Delay discounting water rate 0 sec2.84.48.90.6-1.1-3.02.7
Delay discounting water rate 12 sec1.52.24.71.90.2-2.20.7
Delay discounting water rate 18 sec1.62.25.11.1-0.2-2.31.5
Delay discounting water rate 24 sec4.76.414.72.2-0.6-3.82.4
Delay discounting water rate 6 sec0.60.82.10.60.4-1.50.7
Locomotor activity0.40.61.70.21.30.5-0.7
Locomotor testing distance0.30.51.70.01.30.0-0.4
Locomotor testing rearing0.50.81.21.10.6-1.10.5
Light reinforcement 12.03.64.91.7-1.6-2.22.1
Light reinforcement 21.92.54.1-0.2-1.9-1.62.0
Reaction time number correct2.94.19.82.20.8-3.11.0
Reaction time mean minus median0.50.71.2-1.0-0.61.1-0.4
Reaction time mean minus median AUC0.70.91.7-1.3-1.20.60.4
Reaction time num false alarms0.30.40.90.90.10.6-0.6
Reaction time num false alarms AUC0.50.70.91.00.50.8-0.9
Reaction time trials correct on left2.94.19.82.20.8-3.11.0
Reaction time trials on left2.94.210.22.20.8-3.21.0
Reaction time mean0.20.30.8-0.2-0.3-0.90.5
Reaction time mean AUC0.30.41.1-0.0-0.2-1.10.5
Median of all reaction times0.30.51.50.0-0.0-1.20.6
Reaction time omissions0.50.71.4-1.2-0.7-0.70.7
Reaction time false alarm rate1.21.85.2-0.20.12.3-1.4
Reaction time premature initiation rate1.31.73.61.90.70.8-1.5
Reaction time premature initiations2.02.98.52.91.1-1.1-0.8
Std. dev. reaction times0.10.20.5-0.20.40.3-0.7
Reaction time trials completed2.94.210.22.20.8-3.21.0
Reaction time trials AUC3.14.510.52.40.7-3.21.1
Social response proportion0.10.10.10.40.3-0.4-0.3
Social responses0.10.10.3-0.1-0.2-0.50.5
Social time0.10.20.40.50.3-0.6-0.1
Conditioned locomotion3.23.86.50.4-1.6-2.52.5
Cocaine response after cond. corrected0.10.10.4-0.20.60.2-0.3
Cocaine response after cond. not corrected0.70.81.2-0.51.10.8-1.0
Cocaine response before conditioning0.81.01.4-0.81.20.8-1.1
Saline control response2.02.74.6-0.7-2.0-1.22.1
Condit. Reinf. active minus inactive responses0.91.11.7-1.0-1.1-0.91.3
Condit. Reinf. active-inactive response ratio2.32.45.8-0.7-2.4-0.51.8
Condit. Reinf. active responses0.40.51.40.2-0.3-1.20.7
Condit. Reinf. inactive responses0.81.02.01.01.4-0.6-0.8
Condit. Reinf. lever presses1.21.63.41.6-0.0-1.80.7
Condit. Reinf. lever reinforcers received0.71.03.00.7-0.0-1.70.6
Pavlov. Cond. lever latency1.92.65.0-1.80.72.2-1.2
Pavlov. Cond. magazine entry latency1.82.13.81.62.0-0.9-1.0
Pavlov. Cond. change in total contacts1.31.83.92.00.9-1.6-0.2
Pavlov. Cond. index score1.31.73.01.70.8-1.70.1
Pavlov. Cond. latency score1.31.63.31.50.8-1.80.2
Pavlov. Cond. lever contacts2.02.85.91.7-0.8-2.41.4
Pavlov. Cond. magazine entry number1.72.13.3-1.8-1.71.30.8
Pavlov. Cond. intertrial magazine entries1.11.42.6-0.6-1.4-0.91.6
Pavlov. Cond. lever-magazine prob. diff.1.41.83.21.81.0-1.7-0.1
Pavlov. Cond. response bias1.31.83.91.8-0.0-2.00.5
Conditioned reinforcement - actives0.40.40.60.5-0.5-0.80.7
Conditioned reinforcement - inactives0.91.02.3-0.6-0.7-0.91.5
Conditioned locomotion0.70.91.50.7-1.2-0.51.1
Intermittent access intake day 1-15 change0.40.40.9-1.00.5-0.30.4
Intermittent access intake escalation0.30.30.6-0.80.3-0.50.5
Intermittent access intake escalation 20.40.40.6-0.8-0.6-0.40.8
Intermitt. access day 1 inactive lever presses1.51.62.7-1.2-1.1-1.01.6
Intermitt. access day 15 inactive lever presses1.51.73.30.1-0.9-1.81.7
Intermitt. access escalation Index1.51.32.2-0.3-1.5-1.11.4
Intermittent access day 1 total infusions0.20.20.40.5-0.4-0.40.6
Intermittent access day 15 total infusions0.40.41.0-0.4-0.4-0.61.0
Intermittent access terminal intake (last 3 days)0.60.61.3-0.5-0.7-0.71.1
Intermittent access total infusions0.30.40.90.0-0.5-0.60.9
Intermittent access day 1 locomotion0.70.71.10.7-1.0-0.70.9
Intermittent access day 15 total locomotion0.30.30.5-0.4-0.7-0.10.7
Intermittent access total locomotion0.60.61.10.2-1.1-0.61.0
Intermittent access standard deviation1.31.43.4-1.91.10.9-0.4
Cocaine induced anxiety4.24.99.0-1.6-3.0-1.32.5
Post-drug Anxiety0.60.71.1-0.7-1.0-0.90.7
Baseline Anxiety5.65.910.30.73.21.7-3.1
Lifetime Intake0.10.10.3-0.1-0.3-0.20.5
Incentive Sensitization - Responses0.00.00.2-0.40.10.0-0.0
Incentive Sensitization - Breakpoint0.10.10.2-0.50.20.1-0.1
Progressive ratio test 1 active lever presses0.70.71.70.1-0.8-0.81.3
Progressive ratio test 1 breakpoint0.80.91.90.2-0.8-0.91.4
Progressive ratio test 1 inactive lever presses2.72.95.4-0.7-1.5-1.82.3
Progressive ratio test 2 active lever presses0.30.30.6-0.2-0.7-0.30.7
Progressive ratio test 2 breakpoint0.30.30.7-0.2-0.3-0.60.8
Progressive ratio test 2 inactive lever presses0.20.30.5-0.7-0.1-0.40.7
Total sessions with >9 infusions0.40.50.8-0.60.90.6-0.6
Short access day 1 total inactive lever presses0.20.20.5-0.4-0.3-0.00.7
Short access day 10 total inactive lever presses2.32.54.1-1.0-1.5-1.62.0
Short access day 1 total infusions0.91.01.50.01.21.0-1.2
Short access day 10 total infusions0.50.51.2-0.3-0.7-0.51.1
Short access total infusions0.00.00.00.10.10.20.0
Short access day 1 locomotion0.40.41.1-0.50.21.1-0.4
Short access day 10 total locomotion0.30.30.9-0.30.11.0-0.6
Short access total locomotion0.70.71.8-0.60.21.3-0.8
Compulsive drug intake0.70.71.10.4-1.1-1.00.7
One hour access (0.3 mA shock)1.01.21.90.4-1.0-1.41.4
One hour access (shock baseline)0.10.20.5-0.1-0.4-0.20.7
Number of responses in last shaping day1.41.41.8-1.2-1.4-0.81.3
Context. condit. distance diff. score1.11.34.3-0.10.6-2.10.7
Locomotion velocity, session 13.23.56.3-1.11.32.5-2.1
Locomotion distance, session 11.62.12.91.61.70.5-1.7
Locomotion velocity, session 23.54.17.41.01.52.3-2.7
Locomotion distance, session 21.21.76.62.6-0.0-0.3-0.5
Locomotion velocity, session 31.61.93.1-0.51.21.8-1.7
Locomotion distance, session 32.42.65.30.61.81.3-2.3
Stereotopy head waving bouts, day 30.50.61.4-0.70.51.2-0.7
Stereotopy head waving duration, day 30.30.40.6-0.70.80.6-0.5
Locomotion velocity, session 71.11.23.7-0.11.90.2-1.0
Locomotion distance, session 73.44.410.81.63.3-0.4-2.0
Stereotopy head waving bouts, day 70.40.40.9-1.0-0.5-0.60.5
Stereotopy head waving duration, day 70.91.12.7-1.6-1.0-0.20.9
Locomotion velocity, session 81.61.96.1-0.92.5-0.7-0.6
Locomotion distance, session 81.92.96.22.10.6-2.50.5
Degree of sensitization distance1.21.22.81.10.1-1.71.0
Degree of sensitization stereotypy0.60.71.0-0.5-0.7-1.00.9
Condit. Reinf. active minus inactive responses2.02.23.60.4-1.7-1.51.9
Condit. Reinf. active-inactive response ratio0.91.01.80.3-0.7-1.41.2
Condit. Reinf. active responses3.64.46.90.6-2.6-1.82.6
Condit. Reinf. inactive responses1.21.42.60.8-1.6-0.81.3
Incentive salience index mean1.92.33.70.2-1.9-1.31.9
Condit. Reinf. lever presses0.30.40.60.6-0.7-0.50.6
Time in familiar zone, hab. session 10.20.20.50.70.3-0.1-0.3
Time in novel zone, hab. session 10.50.51.7-1.30.6-0.10.1
Total zone transitions, hab. session 10.60.82.71.60.4-0.4-0.5
Total locomotion distance, hab. session 10.81.12.31.20.3-1.50.8
Locomotion velocity, hab. session 10.91.32.51.6-0.2-1.40.9
Time in familiar zone, hab. session 20.40.40.90.51.0-0.4-0.4
Time in novel zone, hab. session 20.10.10.3-0.50.00.5-0.3
Total zone transitions, hab. session 21.92.58.62.9-0.2-1.2-0.2
Total locomotion distance, hab. session 22.63.57.72.8-1.3-1.91.0
Locomotion velocity, hab. session 22.73.76.92.6-1.6-1.91.3
Novel to familiar place preference ratio4.04.29.21.9-3.0-1.31.5
Novelty place preference3.63.88.71.7-3.0-1.21.5
Time in novel zone, NPP test3.43.57.41.8-2.7-1.21.4
Total zone transitions, NPP test1.31.85.62.40.7-1.1-0.4
Total locomotion distance, NPP test2.73.810.73.3-0.3-2.00.6
Locomotion velocity, NPP test2.43.59.33.0-0.6-1.90.8
Pavlov. Cond. lever latency2.73.49.80.73.1-1.5-1.1
Pavlov. Cond. magazine entry latency2.63.46.9-1.7-2.60.31.9
Pavlov. Cond. change in total contacts1.01.02.81.0-1.70.50.4
Pavlov. Cond. index score3.94.912.9-1.2-3.60.22.3
Pavlov. Cond. latency score3.64.612.1-1.4-3.50.72.0
Pavlov. Cond. lever contacts2.22.68.50.1-2.90.81.2
Pavlov. Cond. magazine entry number2.43.06.31.72.5-0.7-1.5
Pavlov. Cond. intertrial magazine entries0.91.12.51.6-0.3-1.30.3
Pavlov. Cond. lever-magazine prob. diff.3.94.913.0-0.9-3.6-0.02.4
Pavlov. Cond. response bias2.63.28.6-1.0-2.90.61.7
Bone: apparent density0.30.51.41.2-0.3-0.80.2
Bone surface0.10.20.8-0.90.10.10.4
Bone volume0.10.10.20.2-0.1-0.50.4
Bone: connectivity density0.20.30.50.60.7-0.5-0.2
Bone: cortical apparent density2.33.04.71.61.71.3-2.2
Bone: cortical area4.46.611.9-1.8-3.0-1.43.4
Bone: cortical porosity1.31.42.9-1.1-1.71.10.6
Bone: cortical porosity1.11.22.0-1.3-1.40.50.9
Bone: cortical thickness4.16.815.0-0.9-3.9-0.93.2
Bone: cortical thickness1.11.32.5-0.8-1.2-0.71.6
Bone: cortical tissue density2.63.45.41.61.91.4-2.3
Bone: elastic displacement1.82.04.41.0-2.1-0.71.5
Bone: elastic work4.86.214.1-0.4-3.8-0.83.2
Bone: endosteal estimation0.30.71.9-0.01.4-0.9-0.1
Bone: endosteal perimeter0.71.54.5-2.1-0.2-0.21.2
Bone: final force3.45.610.6-1.3-2.6-1.83.3
Bone: final moment3.96.412.4-1.1-2.9-1.93.5
Bone: marrow area0.30.72.0-0.11.4-0.9-0.1
Bone: maximum diameter1.83.37.4-2.7-1.1-0.42.1
Bone: maximum force3.35.810.8-1.1-2.8-1.83.3
Bone: maximum moment3.86.612.5-0.8-3.1-1.93.5
Bone: minimum diameter2.44.48.8-1.3-2.3-1.43.0
Bone: periosteal estimation1.22.44.6-1.3-1.1-1.42.1
Bone: periosteal perimeter2.84.78.6-2.9-2.10.22.4
Bone: post-yield work0.30.41.21.10.3-0.50.1
Bone: stiffness0.50.81.8-1.3-0.4-0.50.9
Bone: tissue strength2.72.63.51.6-1.9-1.51.5
Bone: trabecular number0.00.10.10.40.00.0-0.3
Bone: trabecular spacing1.51.96.40.10.5-2.51.0
Bone: trabecular thickness0.70.92.10.5-1.41.00.2
Bone: trabecular tissue density0.81.11.4-0.71.11.2-1.1
Breakpoint value in progressive ratio session0.50.60.70.8-0.8-0.80.8
Distance traveled before self-admin0.80.81.9-1.4-0.5-0.41.0
Distance traveled after self-admin1.21.32.41.30.1-1.51.0
Delta time in closed arm before/after self-admin0.40.40.7-0.8-0.80.50.3
Delta time in open arm before/after self-admin0.60.61.21.00.0-1.10.5
Diff in mean of infusions in LGA sessions0.00.00.10.0-0.30.2-0.1
Extinction: sum of active levers before priming1.01.02.00.71.40.6-1.1
Active lever presses in extinction session 60.10.10.10.2-0.3-0.20.4
Delta distance traveled before/after self-admin1.31.43.92.00.6-1.10.1
Delta ambulatory time before/after self-admin1.41.54.32.11.0-0.6-0.5
Time in closed arm before self-admin0.70.81.6-0.20.81.0-1.2
Time in closed arm after self-admin1.81.94.5-1.00.12.1-1.5
Time in open arm before self-admin0.20.20.5-0.7-0.30.30.1
Time in open arm after self-admin0.20.20.40.60.4-0.60.2
Sum of active levers in priming session hrs 5-60.30.30.60.5-0.1-0.80.6
Time to tail flick, vehicle, before self-admin0.10.10.20.4-0.5-0.30.3
Time to tail flick, vehicle, after self-admin1.71.82.9-0.11.21.7-1.7
Time to tail flick, test, before self-admin0.10.10.1-0.2-0.30.3-0.2
Time to tail flick, test, after self-admin0.30.31.1-1.00.10.3-0.1
Delta time to tail flick, vehicle, before/after SA0.10.10.40.60.40.0-0.2
Delta time to tail flick, test, before/after SA0.60.61.1-0.81.10.4-0.5
Ambulatory time before self-admin1.71.82.7-1.7-1.1-0.91.5
Ambulatory time after self-admin0.70.81.90.7-0.1-1.41.0
Total heroin consumption0.30.41.3-1.1-0.2-0.10.3
Area under the delay curve2.02.12.8-1.71.51.0-1.6
Delay disc. indifference point, 0s delay0.70.83.2-1.80.3-0.0-0.0
Delay disc. indifference point, 16s delay1.41.43.50.51.9-0.1-1.4
Delay disc. indifference point, 2s delay0.91.02.9-1.70.30.7-0.6
Delay disc. indifference point, 24s delay3.53.47.20.11.52.0-2.7
Delay disc. indifference point, 4s delay1.21.33.8-2.00.70.7-0.5
Delay disc. indifference point, 8s delay2.93.07.4-2.71.01.3-1.4
Delay discount exponential model param2.62.83.51.8-1.6-1.31.9
Delay discount hyperbolic model param2.52.63.31.8-1.6-1.31.7
Fecal boli incidents, locomotor time 10.50.61.61.30.30.3-0.7
Change in fecal boli incidents, locomotor task3.02.94.90.41.71.9-2.2
Time >=10cm from walls, locomotor time 10.60.61.5-0.01.2-0.9-0.0
Bouts of movement, locomotor time 11.31.42.80.61.11.1-1.7
Total resting periods, locomotor time 11.71.93.60.81.11.5-1.9
Rest time, locomotor task time 10.30.41.20.1-0.41.1-0.4
Distance moved, locomotor task time 10.40.50.8-0.2-0.6-0.90.9
Vertical activity count, locomotor time 11.11.23.30.3-0.5-1.81.1
Time >=10cm from walls, locomotor time 20.40.40.90.3-0.90.70.1
Bouts of movement, locomotor time 21.21.32.70.11.50.6-1.7
Total resting periods, locomotor time 20.80.91.80.11.20.4-1.3
Rest time, locomotor task time 20.10.10.2-0.30.00.5-0.5
Distance moved, locomotor task time 20.30.40.7-0.4-0.90.10.7
Vertical activity count, locomotor time 20.30.30.70.0-0.1-0.80.8
Weight adjusted by age2.32.64.4-0.5-2.1-1.22.1
Seeking ratio, delayed vs. immediate footshock0.91.12.0-0.6-1.4-0.51.3
Locomotion in novel chamber0.10.10.20.40.1-0.40.2
Locomotion in novel chamber post-restriction0.50.50.90.4-1.0-0.50.9
Progressive ratio0.40.41.31.1-0.20.1-0.6
Food seeking constrained by brief footshock0.00.00.0-0.10.10.1-0.2
Seeking ratio, punishment vs. effort0.40.41.0-1.00.6-0.40.5
Run reversals in cocaine runway, females1.01.02.60.91.6-0.3-0.7
Run reversals in cocaine runway, males0.70.72.0-0.2-1.40.20.8
Latency to leave start box in cocaine runway0.50.61.11.00.80.3-0.8
Latency to leave start box in cocaine runway, F0.30.41.01.00.6-0.2-0.3
Latency to leave start box in cocaine runway, M0.40.41.41.20.10.2-0.4
Cd content in liver1.61.73.91.22.0-0.2-1.3
Co content in liver0.40.41.11.00.5-0.6-0.1
Cu content in liver0.20.30.7-0.2-0.80.50.3
Fe content in liver0.70.81.90.41.40.4-1.0
K content in liver1.51.53.10.1-1.2-1.21.7
Mg content in liver1.01.02.51.6-0.2-1.10.5
Mn content in liver0.50.62.1-1.5-0.10.10.5
Na content in liver0.20.20.5-0.7-0.30.40.2
Rb content in liver1.41.73.01.3-0.9-1.71.2
Se content in liver0.20.30.8-0.20.2-0.90.5
Sr content in liver0.60.51.7-0.0-0.61.3-0.3
Zn content in liver0.60.71.7-0.7-0.71.3-0.0