Rbfox3

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression ENSRNOG00000003386 0.08 0.05 2.1e-04 0.06 0.03 0.05 0.05 2.1e-06 4.0e-04 2.4e-05 1.7e-05
2 Brain intron excision ratio chr10:104053372:104129711 0.03 0.02 2.9e-03 0.03 0.02 0.01 0.02 2.1e-03 4.8e-03 4.7e-02 5.6e-03
3 PL mRNA stability ENSRNOG00000003386 0.05 0.03 4.2e-03 0.01 0.01 0 0.01 5.2e-02 7.5e-02 2.9e-01 7.8e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail2.06.510.32.90.93.2
BMI without tail0.40.92.5-0.31.6-0.2
Body weight2.510.414.83.8-1.43.9
Epididymis fat weight0.51.32.51.10.21.6
Glucose0.40.71.01.00.40.9
Heart weight1.72.43.51.90.51.9
Left kidney weight2.98.29.12.9-2.63.0
Right kidney weight2.05.76.52.6-2.12.5
Tail length0.41.11.6-1.2-0.7-1.3
Length with tail1.34.97.62.0-2.81.8
Length without tail5.712.415.13.7-2.93.9
Liver weight, left1.52.53.31.4-1.81.5
Liver weight, right2.33.84.21.9-1.92.1
Parametrial fat weight0.20.50.90.7-0.20.9
Retroperitoneal fat weight0.10.40.50.7-0.70.6
Intraocular pressure2.43.44.5-2.11.4-1.9
Extensor digitorum longus weight0.72.77.4-0.62.7-0.6
Soleus weight0.20.70.90.80.70.9
Tibialis anterior weight0.20.61.70.41.30.3
Tibia length12.134.144.25.4-6.75.4
Number of licking bursts0.10.10.30.4-0.10.5
Food consumed during 24 hour testing period0.91.01.7-1.1-0.4-1.3
Times rat made contact with spout0.70.81.1-1.10.4-1.1
Mean time between licks in bursts0.10.10.20.20.20.5
Mean num. licks in bursts1.01.21.6-1.10.8-1.3
Std. dev. time between licks in bursts1.72.03.2-1.80.8-1.5
Water consumed over 24 hours0.30.30.5-0.60.1-0.7
Indifference point 0 sec1.72.73.5-1.41.9-1.7
Indifference point AUC0.91.01.7-1.30.4-1.1
Indifference point function ln k1.21.72.21.51.21.2
Indifference point function log k1.21.72.21.51.21.2
Delay discounting total patch changes 0 sec2.13.44.9-1.52.2-1.8
Delay discounting total patch changes 12 sec2.43.34.0-1.72.0-1.7
Delay discounting total patch changes 18 sec5.97.811.0-3.01.8-3.3
Delay discounting total patch changes 24 sec1.11.42.0-1.40.5-1.4
Delay discounting total patch changes 6 sec1.01.62.0-1.11.4-1.2
Delay discounting time to switch 0 sec0.10.10.20.1-0.50.2
Delay discounting water rate 0 sec0.30.40.5-0.70.6-0.6
Delay discounting water rate 12 sec1.11.74.10.82.00.4
Delay discounting water rate 18 sec0.71.02.4-0.41.5-0.6
Delay discounting water rate 24 sec3.04.26.3-1.72.5-1.8
Delay discounting water rate 6 sec0.81.21.71.10.91.3
Locomotor activity0.10.10.30.20.50.3
Locomotor testing distance0.20.30.4-0.60.4-0.5
Locomotor testing rearing1.42.22.6-1.61.3-1.5
Light reinforcement 11.01.82.8-1.01.7-1.2
Light reinforcement 20.10.10.20.5-0.10.4
Reaction time number correct5.68.08.2-2.92.8-2.8
Reaction time mean minus median1.21.52.11.5-0.91.2
Reaction time mean minus median AUC1.01.31.61.1-1.31.0
Reaction time num false alarms0.20.20.5-0.20.7-0.4
Reaction time num false alarms AUC0.30.40.6-0.50.8-0.7
Reaction time trials correct on left5.68.08.2-2.92.8-2.8
Reaction time trials on left5.57.98.1-2.92.8-2.8
Reaction time mean0.10.10.10.3-0.20.3
Reaction time mean AUC0.10.10.10.3-0.00.3
Median of all reaction times0.00.00.00.10.00.1
Reaction time omissions0.50.70.80.9-0.80.9
Reaction time false alarm rate0.50.70.91.0-0.70.8
Reaction time premature initiation rate0.91.23.60.01.9-0.1
Reaction time premature initiations3.75.310.4-1.63.2-1.7
Std. dev. reaction times0.20.20.40.6-0.10.5
Reaction time trials completed5.57.98.1-2.92.8-2.8
Reaction time trials AUC6.18.68.8-3.03.0-2.9
Social response proportion0.00.00.00.20.10.2
Social responses0.20.30.50.70.20.6
Social time0.10.10.2-0.00.40.3
Conditioned locomotion0.30.30.5-0.70.1-0.7
Cocaine response after cond. corrected0.20.20.40.6-0.40.4
Cocaine response after cond. not corrected0.10.10.20.3-0.40.1
Cocaine response before conditioning0.40.50.8-0.9-0.0-0.8
Saline control response0.10.10.1-0.4-0.2-0.2
Condit. Reinf. active minus inactive responses0.40.51.0-0.5-1.0-0.4
Condit. Reinf. active-inactive response ratio0.20.20.5-0.2-0.70.1
Condit. Reinf. active responses0.70.91.4-1.20.4-1.1
Condit. Reinf. inactive responses1.51.82.1-1.31.3-1.5
Condit. Reinf. lever presses2.83.94.3-2.11.8-2.0
Condit. Reinf. lever reinforcers received1.11.51.9-1.40.9-1.4
Pavlov. Cond. lever latency4.35.96.82.5-2.12.6
Pavlov. Cond. magazine entry latency1.71.93.6-0.91.9-1.2
Pavlov. Cond. change in total contacts3.04.14.4-2.02.0-2.1
Pavlov. Cond. index score3.24.24.6-2.02.0-2.1
Pavlov. Cond. latency score2.93.74.3-1.91.8-2.1
Pavlov. Cond. lever contacts4.35.97.0-2.71.9-2.6
Pavlov. Cond. magazine entry number2.73.34.91.4-2.21.7
Pavlov. Cond. intertrial magazine entries1.41.82.8-1.7-0.8-1.4
Pavlov. Cond. lever-magazine prob. diff.3.64.75.2-2.12.1-2.3
Pavlov. Cond. response bias2.94.04.4-1.92.1-2.0
Conditioned reinforcement - actives0.40.40.8-0.70.9-0.2
Conditioned reinforcement - inactives0.10.10.20.2-0.30.4
Conditioned locomotion0.50.60.8-0.90.9-0.4
Intermittent access intake day 1-15 change0.20.20.6-0.2-0.80.2
Intermittent access intake escalation0.30.30.4-0.5-0.6-0.4
Intermittent access intake escalation 20.30.30.8-0.4-0.90.2
Intermitt. access day 1 inactive lever presses0.20.20.70.0-0.90.0
Intermitt. access day 15 inactive lever presses0.30.30.6-0.80.3-0.5
Intermitt. access escalation Index0.10.10.2-0.5-0.2-0.3
Intermittent access day 1 total infusions0.20.30.70.30.80.1
Intermittent access day 15 total infusions0.10.10.2-0.40.1-0.4
Intermittent access terminal intake (last 3 days)0.10.10.2-0.5-0.1-0.2
Intermittent access total infusions0.10.10.2-0.30.4-0.3
Intermittent access day 1 locomotion0.40.40.9-0.21.0-0.5
Intermittent access day 15 total locomotion0.10.10.30.4-0.10.5
Intermittent access total locomotion0.10.20.4-0.20.7-0.1
Intermittent access standard deviation3.23.53.81.9-1.81.8
Cocaine induced anxiety0.40.51.50.1-1.20.2
Post-drug Anxiety0.40.40.5-0.7-0.4-0.7
Baseline Anxiety0.10.10.30.20.50.1
Lifetime Intake0.00.00.10.00.30.0
Incentive Sensitization - Responses0.30.30.80.5-0.20.9
Incentive Sensitization - Breakpoint0.40.40.80.5-0.30.9
Progressive ratio test 1 active lever presses0.80.81.2-0.90.7-1.1
Progressive ratio test 1 breakpoint0.60.70.9-0.70.8-1.0
Progressive ratio test 1 inactive lever presses0.10.10.2-0.1-0.4-0.3
Progressive ratio test 2 active lever presses0.20.20.4-0.60.4-0.2
Progressive ratio test 2 breakpoint0.20.20.4-0.60.5-0.1
Progressive ratio test 2 inactive lever presses0.10.10.10.0-0.40.3
Total sessions with >9 infusions0.30.30.50.5-0.50.7
Short access day 1 total inactive lever presses0.10.10.20.0-0.40.5
Short access day 10 total inactive lever presses0.60.71.60.4-1.30.6
Short access day 1 total infusions0.20.30.40.6-0.00.7
Short access day 10 total infusions0.10.10.2-0.20.1-0.4
Short access total infusions0.10.10.20.40.30.4
Short access day 1 locomotion0.90.91.51.1-0.41.2
Short access day 10 total locomotion0.50.50.80.7-0.60.9
Short access total locomotion2.42.53.82.0-0.41.9
Compulsive drug intake0.20.20.50.00.7-0.2
One hour access (0.3 mA shock)0.70.81.0-1.01.0-0.8
One hour access (shock baseline)0.30.30.7-0.80.1-0.4
Number of responses in last shaping day2.62.63.41.9-1.31.6
Context. condit. distance diff. score0.20.20.3-0.30.5-0.5
Locomotion velocity, session 11.71.92.11.3-1.31.5
Locomotion distance, session 10.40.61.7-0.21.3-0.0
Locomotion velocity, session 20.20.20.5-0.20.7-0.4
Locomotion distance, session 21.11.64.2-0.42.0-0.6
Locomotion velocity, session 30.20.20.40.6-0.50.3
Locomotion distance, session 30.60.71.11.10.50.8
Stereotopy head waving bouts, day 30.20.20.40.4-0.60.3
Stereotopy head waving duration, day 30.10.10.2-0.2-0.5-0.3
Locomotion velocity, session 70.30.30.6-0.8-0.2-0.4
Locomotion distance, session 72.33.03.4-1.81.9-1.5
Stereotopy head waving bouts, day 70.20.20.50.3-0.70.2
Stereotopy head waving duration, day 70.80.92.40.6-1.50.4
Locomotion velocity, session 80.40.50.7-0.6-0.8-0.7
Locomotion distance, session 81.72.55.4-0.92.3-1.1
Degree of sensitization distance5.75.88.9-3.01.3-2.6
Degree of sensitization stereotypy0.10.10.10.3-0.30.2
Condit. Reinf. active minus inactive responses0.50.60.9-0.90.3-0.9
Condit. Reinf. active-inactive response ratio1.71.82.9-1.70.3-1.6
Condit. Reinf. active responses0.40.50.7-0.80.4-0.8
Condit. Reinf. inactive responses0.10.10.3-0.20.5-0.2
Incentive salience index mean0.40.50.8-0.80.1-0.9
Condit. Reinf. lever presses0.30.40.6-0.40.5-0.8
Time in familiar zone, hab. session 10.40.30.9-0.20.9-0.3
Time in novel zone, hab. session 10.50.51.50.3-1.20.2
Total zone transitions, hab. session 10.71.12.1-0.71.4-0.7
Total locomotion distance, hab. session 10.40.61.3-0.51.1-0.5
Locomotion velocity, hab. session 10.50.82.0-0.41.4-0.5
Time in familiar zone, hab. session 20.20.20.5-0.00.7-0.0
Time in novel zone, hab. session 20.10.10.2-0.1-0.5-0.1
Total zone transitions, hab. session 23.03.97.2-1.52.7-1.5
Total locomotion distance, hab. session 22.12.76.1-0.92.5-1.1
Locomotion velocity, hab. session 21.72.35.1-0.92.2-1.0
Novel to familiar place preference ratio2.42.52.9-1.61.7-1.5
Novelty place preference2.22.22.3-1.51.5-1.5
Time in novel zone, NPP test2.42.52.9-1.61.7-1.5
Total zone transitions, NPP test1.42.04.1-0.92.0-1.0
Total locomotion distance, NPP test2.43.38.5-0.72.9-0.9
Locomotion velocity, NPP test1.92.76.9-0.72.6-0.9
Pavlov. Cond. lever latency2.02.53.2-1.81.1-1.8
Pavlov. Cond. magazine entry latency0.81.12.70.5-1.70.5
Pavlov. Cond. change in total contacts0.30.30.40.60.60.4
Pavlov. Cond. index score1.21.52.01.1-1.41.1
Pavlov. Cond. latency score1.92.42.71.5-1.61.5
Pavlov. Cond. lever contacts0.80.91.51.2-0.31.1
Pavlov. Cond. magazine entry number1.21.52.7-1.01.6-0.9
Pavlov. Cond. intertrial magazine entries1.82.22.4-1.51.6-1.4
Pavlov. Cond. lever-magazine prob. diff.0.81.01.41.0-1.20.9
Pavlov. Cond. response bias0.81.01.31.0-1.10.9
Bone: apparent density1.93.24.5-2.11.0-2.0
Bone surface2.44.26.4-2.5-0.8-2.3
Bone volume2.54.36.8-2.60.2-2.4
Bone: connectivity density2.43.75.8-2.40.4-2.3
Bone: cortical apparent density0.60.81.60.71.20.5
Bone: cortical area5.17.79.83.1-2.03.1
Bone: cortical porosity0.40.50.90.4-1.00.5
Bone: cortical porosity0.50.51.30.3-1.10.4
Bone: cortical thickness10.016.524.04.9-1.34.9
Bone: cortical thickness6.07.010.13.1-1.13.2
Bone: cortical tissue density0.60.81.80.61.30.4
Bone: elastic displacement0.70.81.00.90.71.0
Bone: elastic work2.43.14.62.1-0.62.2
Bone: endosteal estimation2.75.99.1-3.00.2-2.9
Bone: endosteal perimeter1.73.53.7-1.9-1.8-1.9
Bone: final force2.64.35.32.2-1.62.3
Bone: final moment2.33.94.82.1-1.52.2
Bone: marrow area2.75.78.9-3.00.1-2.9
Bone: maximum diameter1.62.96.90.9-2.61.0
Bone: maximum force1.62.73.51.8-1.21.9
Bone: maximum moment1.32.32.91.7-1.01.7
Bone: minimum diameter0.20.41.2-0.2-1.1-0.2
Bone: periosteal estimation0.20.51.4-0.0-1.20.1
Bone: periosteal perimeter2.94.88.31.7-2.91.8
Bone: post-yield work1.31.72.1-1.41.0-1.5
Bone: stiffness2.33.64.42.1-1.42.1
Bone: tissue strength1.11.02.0-0.61.4-0.8
Bone: trabecular number1.01.62.4-1.50.2-1.6
Bone: trabecular spacing0.20.20.30.50.10.6
Bone: trabecular thickness0.91.11.7-1.30.3-1.2
Bone: trabecular tissue density0.91.31.81.1-0.91.3
Breakpoint value in progressive ratio session0.80.91.1-1.00.8-1.0
Distance traveled before self-admin0.80.92.20.3-1.50.5
Distance traveled after self-admin2.73.03.9-2.01.3-1.8
Delta time in closed arm before/after self-admin0.40.41.0-0.3-1.0-0.3
Delta time in open arm before/after self-admin0.60.60.8-0.70.9-0.7
Diff in mean of infusions in LGA sessions0.50.50.9-1.00.1-0.8
Extinction: sum of active levers before priming0.20.20.50.20.70.1
Active lever presses in extinction session 60.20.20.5-0.70.0-0.2
Delta distance traveled before/after self-admin2.83.04.3-1.52.1-1.6
Delta ambulatory time before/after self-admin3.74.04.7-1.92.2-1.9
Time in closed arm before self-admin1.41.62.81.7-0.01.5
Time in closed arm after self-admin1.21.21.71.3-0.91.0
Time in open arm before self-admin0.30.30.80.1-0.90.4
Time in open arm after self-admin0.60.71.1-1.00.5-0.9
Sum of active levers in priming session hrs 5-60.60.60.8-0.90.5-0.9
Time to tail flick, vehicle, before self-admin0.10.10.10.10.20.4
Time to tail flick, vehicle, after self-admin1.41.52.61.4-0.21.6
Time to tail flick, test, before self-admin0.30.30.5-0.7-0.2-0.6
Time to tail flick, test, after self-admin0.70.71.00.7-1.00.8
Delta time to tail flick, vehicle, before/after SA0.20.20.4-0.40.7-0.4
Delta time to tail flick, test, before/after SA2.01.82.51.5-0.81.6
Ambulatory time before self-admin1.41.42.90.9-1.70.8
Ambulatory time after self-admin1.11.21.9-1.40.6-1.1
Total heroin consumption0.60.71.40.5-1.20.7
Area under the delay curve1.01.13.20.2-1.80.3
Delay disc. indifference point, 0s delay1.51.62.31.1-1.51.2
Delay disc. indifference point, 16s delay0.60.60.9-0.90.1-0.9
Delay disc. indifference point, 2s delay0.91.13.00.1-1.70.4
Delay disc. indifference point, 24s delay0.10.10.1-0.3-0.3-0.2
Delay disc. indifference point, 4s delay1.41.54.00.4-2.00.6
Delay disc. indifference point, 8s delay2.72.86.90.9-2.60.8
Delay discount exponential model param1.21.33.7-0.31.9-0.3
Delay discount hyperbolic model param1.21.33.7-0.31.9-0.4
Fecal boli incidents, locomotor time 10.80.91.2-0.81.1-0.9
Change in fecal boli incidents, locomotor task0.10.10.10.20.30.2
Time >=10cm from walls, locomotor time 10.60.60.9-0.90.1-1.0
Bouts of movement, locomotor time 10.50.60.70.80.90.6
Total resting periods, locomotor time 10.50.61.10.71.00.3
Rest time, locomotor task time 10.70.81.11.00.51.0
Distance moved, locomotor task time 10.50.50.7-0.8-0.5-0.8
Vertical activity count, locomotor time 10.80.81.3-1.10.1-1.0
Time >=10cm from walls, locomotor time 20.10.10.20.20.50.4
Bouts of movement, locomotor time 20.00.00.10.10.0-0.3
Total resting periods, locomotor time 20.10.10.2-0.10.1-0.4
Rest time, locomotor task time 20.10.10.1-0.30.2-0.3
Distance moved, locomotor task time 21.21.32.41.0-0.81.5
Vertical activity count, locomotor time 20.40.40.70.6-0.40.9
Weight adjusted by age0.20.20.3-0.5-0.6-0.1
Seeking ratio, delayed vs. immediate footshock0.40.40.70.2-0.80.7
Locomotion in novel chamber2.43.04.6-2.00.5-2.1
Locomotion in novel chamber post-restriction0.91.11.8-1.10.5-1.4
Progressive ratio0.40.51.4-0.11.2-0.1
Food seeking constrained by brief footshock0.30.30.70.5-0.10.8
Seeking ratio, punishment vs. effort0.30.41.1-0.0-1.10.1
Run reversals in cocaine runway, females0.30.30.80.10.9-0.3
Run reversals in cocaine runway, males1.31.32.11.3-0.11.4
Latency to leave start box in cocaine runway0.40.51.40.21.20.1
Latency to leave start box in cocaine runway, F0.60.61.7-0.21.3-0.3
Latency to leave start box in cocaine runway, M0.30.31.00.11.0-0.1
Cd content in liver0.60.71.10.71.10.7
Co content in liver0.81.01.6-0.91.2-0.8
Cu content in liver0.10.20.20.4-0.30.5
Fe content in liver1.62.02.9-1.60.7-1.7
K content in liver0.10.10.3-0.3-0.1-0.6
Mg content in liver1.81.92.2-1.21.4-1.5
Mn content in liver1.31.52.41.1-1.51.0
Na content in liver0.30.30.8-0.2-0.9-0.2
Rb content in liver0.60.71.2-0.81.1-0.7
Se content in liver0.80.91.5-1.1-0.2-1.2
Sr content in liver0.80.71.01.0-0.31.0
Zn content in liver0.80.91.11.0-0.81.0