Cacng5

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 BLA gene expression ENSRNOG00000003288 0.28 0.09 1.2e-07 0.1 0.1 0.1 0.1 3.8e-06 9.4e-06 4.8e-06 3.8e-06
2 NAcc mRNA stability ENSRNOG00000003288 0.05 0.03 4.5e-03 0.02 0.01 0.03 0.01 1.1e-02 9.1e-02 2.3e-03 3.6e-02
3 PL gene expression ENSRNOG00000003288 0.13 0.08 1.6e-04 0.04 0.04 0.04 0.04 1.1e-03 4.4e-04 9.6e-04 5.4e-04

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail1.75.514.1-0.41.5-3.8
BMI without tail3.06.215.0-1.90.2-3.9
Body weight1.77.212.2-2.8-1.3-3.5
Epididymis fat weight2.04.711.1-1.31.2-3.3
Glucose0.81.22.31.50.90.7
Heart weight0.10.10.20.20.2-0.4
Left kidney weight0.10.20.40.50.1-0.7
Right kidney weight0.10.30.80.0-0.2-0.9
Tail length1.13.25.6-2.4-1.8-1.0
Length with tail1.03.75.6-2.4-2.3-0.5
Length without tail0.10.30.5-0.4-0.70.5
Liver weight, left0.50.81.0-0.6-1.01.0
Liver weight, right0.00.00.10.10.30.1
Parametrial fat weight0.61.12.3-1.5-0.5-0.8
Retroperitoneal fat weight1.54.88.5-2.9-1.3-2.1
Intraocular pressure0.10.10.30.30.3-0.5
Extensor digitorum longus weight1.35.29.82.13.1-1.2
Soleus weight0.00.10.10.4-0.40.1
Tibialis anterior weight0.41.43.6-0.40.7-1.9
Tibia length0.10.20.60.20.1-0.8
Number of licking bursts0.10.10.2-0.1-0.40.5
Food consumed during 24 hour testing period1.72.14.5-1.3-0.2-2.1
Times rat made contact with spout0.50.61.0-0.8-1.00.2
Mean time between licks in bursts0.40.61.4-0.40.4-1.2
Mean num. licks in bursts0.20.30.7-0.30.3-0.8
Std. dev. time between licks in bursts0.91.11.90.21.2-1.4
Water consumed over 24 hours0.60.82.0-0.50.2-1.4
Indifference point 0 sec5.18.212.3-3.5-2.5-2.5
Indifference point AUC0.30.40.6-0.8-0.7-0.4
Indifference point function ln k0.10.10.10.20.30.4
Indifference point function log k0.10.10.10.20.30.4
Delay discounting total patch changes 0 sec4.77.511.0-3.3-2.3-2.5
Delay discounting total patch changes 12 sec4.45.99.9-3.1-2.4-1.5
Delay discounting total patch changes 18 sec1.41.92.3-1.5-1.4-1.2
Delay discounting total patch changes 24 sec3.24.05.6-2.4-1.8-1.8
Delay discounting total patch changes 6 sec4.16.29.8-3.1-2.4-1.8
Delay discounting time to switch 0 sec0.30.40.60.70.8-0.1
Delay discounting water rate 0 sec1.62.64.9-2.2-1.3-1.1
Delay discounting water rate 12 sec0.10.10.20.20.4-0.5
Delay discounting water rate 18 sec0.30.30.6-0.8-0.3-0.5
Delay discounting water rate 24 sec0.20.20.6-0.2-0.20.7
Delay discounting water rate 6 sec0.10.20.2-0.00.5-0.5
Locomotor activity0.91.52.6-1.1-1.6-0.8
Locomotor testing distance0.71.12.4-0.8-1.5-0.4
Locomotor testing rearing1.21.94.0-0.7-2.01.1
Light reinforcement 11.62.97.0-0.41.3-2.6
Light reinforcement 21.31.73.4-0.31.3-1.8
Reaction time number correct0.30.50.90.71.00.2
Reaction time mean minus median0.20.30.50.50.7-0.3
Reaction time mean minus median AUC0.10.20.30.30.5-0.4
Reaction time num false alarms1.52.13.9-1.5-2.00.1
Reaction time num false alarms AUC1.82.54.1-1.9-2.0-0.1
Reaction time trials correct on left0.30.50.90.71.00.2
Reaction time trials on left0.30.40.90.60.90.1
Reaction time mean0.20.20.60.2-0.10.8
Reaction time mean AUC0.20.30.80.3-0.10.9
Median of all reaction times0.30.40.9-0.1-0.50.9
Reaction time omissions0.30.40.7-0.8-0.1-0.7
Reaction time false alarm rate1.82.64.9-1.7-2.20.2
Reaction time premature initiation rate0.60.81.1-1.0-0.6-1.0
Reaction time premature initiations0.20.30.7-0.6-0.0-0.8
Std. dev. reaction times0.10.10.30.1-0.20.6
Reaction time trials completed0.30.40.90.60.90.1
Reaction time trials AUC0.20.40.80.50.90.2
Social response proportion0.00.00.0-0.2-0.1-0.2
Social responses0.91.21.3-1.2-1.1-1.0
Social time0.40.51.10.50.11.0
Conditioned locomotion0.00.10.2-0.40.0-0.1
Cocaine response after cond. corrected0.20.20.40.50.70.2
Cocaine response after cond. not corrected1.11.22.70.9-0.01.7
Cocaine response before conditioning1.31.53.50.5-0.91.9
Saline control response1.01.33.4-0.60.1-1.9
Condit. Reinf. active minus inactive responses4.65.710.3-2.5-3.20.8
Condit. Reinf. active-inactive response ratio2.62.74.9-1.5-2.21.0
Condit. Reinf. active responses5.47.613.4-3.0-3.70.6
Condit. Reinf. inactive responses2.53.14.7-2.1-2.2-0.4
Condit. Reinf. lever presses2.63.55.8-2.2-2.4-0.4
Condit. Reinf. lever reinforcers received4.76.611.4-2.9-3.40.3
Pavlov. Cond. lever latency0.50.71.30.81.2-0.4
Pavlov. Cond. magazine entry latency1.61.83.51.91.20.7
Pavlov. Cond. change in total contacts0.50.61.1-0.2-1.00.9
Pavlov. Cond. index score0.20.30.50.2-0.60.7
Pavlov. Cond. latency score0.30.40.90.4-0.50.9
Pavlov. Cond. lever contacts0.40.61.0-0.8-1.0-0.1
Pavlov. Cond. magazine entry number1.92.34.7-2.2-1.3-0.8
Pavlov. Cond. intertrial magazine entries5.36.812.6-3.5-2.3-1.6
Pavlov. Cond. lever-magazine prob. diff.0.20.30.60.3-0.50.8
Pavlov. Cond. response bias0.20.20.5-0.4-0.70.1
Conditioned reinforcement - actives0.10.10.1-0.2-0.40.2
Conditioned reinforcement - inactives1.01.11.5-1.2-1.2-0.7
Conditioned locomotion1.82.13.8-2.0-1.0-1.2
Intermittent access intake day 1-15 change0.60.60.9-0.5-0.71.0
Intermittent access intake escalation0.40.40.8-0.3-0.50.9
Intermittent access intake escalation 21.21.21.7-1.3-1.10.8
Intermitt. access day 1 inactive lever presses2.22.45.0-1.5-2.20.2
Intermitt. access day 15 inactive lever presses0.60.70.9-1.0-0.9-0.5
Intermitt. access escalation Index2.11.83.21.80.61.4
Intermittent access day 1 total infusions0.70.81.5-0.9-0.4-1.2
Intermittent access day 15 total infusions0.50.61.0-1.0-0.7-0.6
Intermittent access terminal intake (last 3 days)1.82.03.3-1.8-1.4-0.8
Intermittent access total infusions2.22.53.7-1.9-1.6-1.1
Intermittent access day 1 locomotion2.62.73.5-1.9-1.3-1.7
Intermittent access day 15 total locomotion4.64.98.8-3.0-2.2-1.0
Intermittent access total locomotion7.38.213.5-3.7-2.5-2.2
Intermittent access standard deviation0.80.91.4-1.2-0.7-0.8
Cocaine induced anxiety0.00.00.10.0-0.00.3
Post-drug Anxiety0.70.81.40.91.20.1
Baseline Anxiety1.81.93.51.41.9-0.6
Lifetime Intake2.52.83.9-2.0-1.6-1.4
Incentive Sensitization - Responses0.90.91.3-1.0-1.20.7
Incentive Sensitization - Breakpoint1.01.01.5-0.9-1.20.9
Progressive ratio test 1 active lever presses2.82.93.5-1.9-1.5-1.7
Progressive ratio test 1 breakpoint3.33.44.0-2.0-1.5-2.0
Progressive ratio test 1 inactive lever presses3.33.54.3-2.1-2.1-1.4
Progressive ratio test 2 active lever presses2.22.33.7-1.9-1.7-0.7
Progressive ratio test 2 breakpoint2.52.84.3-2.1-1.9-0.7
Progressive ratio test 2 inactive lever presses3.33.86.1-2.5-1.8-1.4
Total sessions with >9 infusions0.80.92.50.10.3-1.6
Short access day 1 total inactive lever presses0.50.50.8-0.8-0.9-0.4
Short access day 10 total inactive lever presses0.91.01.9-1.4-1.0-0.2
Short access day 1 total infusions0.80.81.5-0.7-0.7-1.2
Short access day 10 total infusions5.25.88.0-2.8-1.6-2.6
Short access total infusions2.42.73.2-1.8-1.8-1.2
Short access day 1 locomotion4.44.79.4-2.0-0.6-3.1
Short access day 10 total locomotion6.57.111.4-3.4-2.4-2.0
Short access total locomotion4.95.08.1-2.4-1.2-2.8
Compulsive drug intake0.50.41.00.6-0.21.0
One hour access (0.3 mA shock)1.11.32.3-1.2-1.50.3
One hour access (shock baseline)0.70.81.2-1.1-0.8-0.8
Number of responses in last shaping day0.50.50.6-0.7-0.6-0.8
Context. condit. distance diff. score0.00.10.10.00.3-0.3
Locomotion velocity, session 10.20.20.4-0.3-0.70.3
Locomotion distance, session 10.10.20.4-0.2-0.60.3
Locomotion velocity, session 22.32.74.2-0.3-2.02.1
Locomotion distance, session 20.40.61.10.2-0.91.0
Locomotion velocity, session 31.01.22.61.61.00.2
Locomotion distance, session 30.30.30.60.5-0.20.7
Stereotopy head waving bouts, day 31.01.22.11.31.40.2
Stereotopy head waving duration, day 30.91.11.81.31.40.0
Locomotion velocity, session 70.20.20.40.60.10.6
Locomotion distance, session 70.10.10.2-0.4-0.2-0.1
Stereotopy head waving bouts, day 71.51.73.41.91.00.8
Stereotopy head waving duration, day 73.23.97.12.71.21.8
Locomotion velocity, session 80.70.81.2-0.3-1.01.1
Locomotion distance, session 80.30.40.7-0.2-0.80.6
Degree of sensitization distance0.40.40.9-1.0-0.3-0.5
Degree of sensitization stereotypy1.61.83.61.90.51.2
Condit. Reinf. active minus inactive responses3.43.86.9-2.0-2.60.6
Condit. Reinf. active-inactive response ratio1.21.32.3-1.0-1.50.8
Condit. Reinf. active responses4.04.88.6-2.4-2.90.6
Condit. Reinf. inactive responses1.41.72.5-1.6-1.6-0.1
Incentive salience index mean2.53.05.7-1.7-2.40.7
Condit. Reinf. lever presses0.30.40.8-0.2-0.90.7
Time in familiar zone, hab. session 10.80.71.5-1.2-0.8-0.2
Time in novel zone, hab. session 10.60.61.11.10.8-0.0
Total zone transitions, hab. session 10.30.50.5-0.7-0.7-0.6
Total locomotion distance, hab. session 11.01.52.0-1.4-1.2-0.9
Locomotion velocity, hab. session 11.01.41.9-1.4-1.3-0.7
Time in familiar zone, hab. session 21.31.32.3-1.1-1.50.7
Time in novel zone, hab. session 20.70.81.50.71.2-0.6
Total zone transitions, hab. session 20.00.00.00.2-0.2-0.2
Total locomotion distance, hab. session 20.60.81.5-0.8-0.4-1.2
Locomotion velocity, hab. session 20.40.61.2-0.6-0.2-1.1
Novel to familiar place preference ratio1.61.73.1-1.8-1.3-0.6
Novelty place preference1.11.21.9-1.4-1.2-0.3
Time in novel zone, NPP test1.11.11.8-1.3-1.3-0.2
Total zone transitions, NPP test0.10.10.40.20.1-0.6
Total locomotion distance, NPP test0.50.70.9-1.0-0.9-0.6
Locomotion velocity, NPP test0.50.71.7-0.6-0.1-1.3
Pavlov. Cond. lever latency0.50.71.40.71.20.2
Pavlov. Cond. magazine entry latency1.72.23.6-1.7-1.9-0.4
Pavlov. Cond. change in total contacts1.41.53.1-1.2-1.8-0.0
Pavlov. Cond. index score1.21.52.8-1.3-1.7-0.4
Pavlov. Cond. latency score0.81.02.0-1.0-1.4-0.4
Pavlov. Cond. lever contacts0.20.30.8-0.3-0.9-0.0
Pavlov. Cond. magazine entry number1.21.62.51.51.60.3
Pavlov. Cond. intertrial magazine entries1.82.23.7-1.9-1.0-1.3
Pavlov. Cond. lever-magazine prob. diff.1.01.32.4-1.1-1.5-0.3
Pavlov. Cond. response bias1.21.42.7-1.2-1.7-0.2
Bone: apparent density0.20.30.6-0.8-0.3-0.5
Bone surface3.05.38.1-2.7-2.80.8
Bone volume1.93.25.6-2.4-2.0-0.1
Bone: connectivity density0.40.60.9-1.0-1.00.2
Bone: cortical apparent density4.66.010.41.43.2-2.3
Bone: cortical area1.72.64.0-2.0-0.9-1.7
Bone: cortical porosity4.95.310.1-1.8-3.21.5
Bone: cortical porosity2.93.16.2-1.6-2.50.7
Bone: cortical thickness4.47.210.31.63.2-3.0
Bone: cortical thickness1.41.62.30.71.5-1.5
Bone: cortical tissue density4.45.79.91.43.2-2.3
Bone: elastic displacement0.50.61.01.00.50.6
Bone: elastic work0.30.40.9-0.60.1-0.9
Bone: endosteal estimation12.827.644.9-5.9-6.71.7
Bone: endosteal perimeter10.822.335.0-5.5-5.91.2
Bone: final force1.83.05.1-2.3-1.6-1.1
Bone: final moment1.93.15.5-2.3-1.6-1.1
Bone: marrow area12.627.144.2-5.8-6.61.8
Bone: maximum diameter3.76.710.5-3.2-3.10.1
Bone: maximum force2.44.37.5-2.7-1.7-1.5
Bone: maximum moment2.64.48.1-2.8-1.8-1.4
Bone: minimum diameter7.814.525.1-5.0-4.2-1.0
Bone: periosteal estimation8.316.926.7-5.2-4.9-0.1
Bone: periosteal perimeter3.45.78.6-2.9-2.90.2
Bone: post-yield work1.52.03.0-1.7-1.7-0.3
Bone: stiffness1.52.43.7-1.9-1.4-1.2
Bone: tissue strength0.70.71.21.10.70.6
Bone: trabecular number0.30.50.9-0.9-0.7-0.2
Bone: trabecular spacing0.20.30.40.60.30.6
Bone: trabecular thickness1.21.42.3-1.4-0.3-1.5
Bone: trabecular tissue density1.31.83.20.41.5-1.8
Breakpoint value in progressive ratio session0.30.30.70.4-0.30.8
Distance traveled before self-admin1.21.32.21.50.11.3
Distance traveled after self-admin1.31.42.71.2-0.41.6
Delta time in closed arm before/after self-admin0.50.51.20.1-0.51.1
Delta time in open arm before/after self-admin1.11.12.01.11.4-0.4
Diff in mean of infusions in LGA sessions0.91.01.51.11.2-0.6
Extinction: sum of active levers before priming0.00.00.0-0.20.2-0.2
Active lever presses in extinction session 61.11.11.7-1.3-1.1-0.6
Delta distance traveled before/after self-admin0.10.10.20.50.4-0.0
Delta ambulatory time before/after self-admin0.00.00.1-0.20.1-0.3
Time in closed arm before self-admin0.10.10.30.0-0.2-0.5
Time in closed arm after self-admin0.50.51.10.2-0.71.0
Time in open arm before self-admin0.70.71.51.20.70.6
Time in open arm after self-admin0.50.61.20.71.1-0.2
Sum of active levers in priming session hrs 5-60.10.10.10.30.00.4
Time to tail flick, vehicle, before self-admin0.70.72.00.3-0.21.4
Time to tail flick, vehicle, after self-admin0.20.30.6-0.40.2-0.7
Time to tail flick, test, before self-admin0.10.10.40.1-0.10.6
Time to tail flick, test, after self-admin0.20.20.4-0.6-0.4-0.4
Delta time to tail flick, vehicle, before/after SA1.51.42.0-1.4-0.6-1.4
Delta time to tail flick, test, before/after SA0.30.20.4-0.6-0.60.1
Ambulatory time before self-admin0.80.91.41.20.11.1
Ambulatory time after self-admin0.40.40.80.6-0.40.9
Total heroin consumption0.50.61.0-0.4-1.00.7
Area under the delay curve0.50.51.00.10.7-1.0
Delay disc. indifference point, 0s delay0.70.81.41.21.00.1
Delay disc. indifference point, 16s delay1.11.12.6-0.10.8-1.6
Delay disc. indifference point, 2s delay0.50.50.9-1.0-0.4-0.6
Delay disc. indifference point, 24s delay2.32.35.6-1.10.3-2.4
Delay disc. indifference point, 4s delay0.70.71.21.10.70.7
Delay disc. indifference point, 8s delay1.31.42.00.71.4-1.3
Delay discount exponential model param0.30.30.80.2-0.40.9
Delay discount hyperbolic model param0.30.30.70.2-0.50.9
Fecal boli incidents, locomotor time 10.10.20.20.50.40.2
Change in fecal boli incidents, locomotor task0.30.20.4-0.30.5-0.6
Time >=10cm from walls, locomotor time 11.11.12.01.10.01.4
Bouts of movement, locomotor time 10.60.61.4-0.20.7-1.2
Total resting periods, locomotor time 10.50.50.9-0.10.8-1.0
Rest time, locomotor task time 10.50.60.90.50.71.0
Distance moved, locomotor task time 10.40.41.2-0.4-0.1-1.1
Vertical activity count, locomotor time 10.20.20.6-0.2-0.2-0.8
Time >=10cm from walls, locomotor time 20.90.92.00.90.01.4
Bouts of movement, locomotor time 21.51.62.70.61.3-1.6
Total resting periods, locomotor time 21.21.31.80.71.3-1.3
Rest time, locomotor task time 24.14.86.22.52.51.4
Distance moved, locomotor task time 20.10.10.3-0.3-0.5-0.2
Vertical activity count, locomotor time 21.41.52.1-1.4-1.4-0.8
Weight adjusted by age1.61.83.31.81.50.3
Seeking ratio, delayed vs. immediate footshock0.30.30.8-0.20.3-0.9
Locomotion in novel chamber0.30.30.50.4-0.60.7
Locomotion in novel chamber post-restriction1.92.23.5-1.9-1.7-0.4
Progressive ratio0.30.30.70.80.50.2
Food seeking constrained by brief footshock1.92.44.2-1.3-2.11.1
Seeking ratio, punishment vs. effort1.41.72.6-1.5-1.60.4
Run reversals in cocaine runway, females2.42.33.50.81.9-1.7
Run reversals in cocaine runway, males0.00.00.00.00.10.0
Latency to leave start box in cocaine runway0.60.61.00.90.21.0
Latency to leave start box in cocaine runway, F1.11.22.31.50.31.0
Latency to leave start box in cocaine runway, M0.10.10.1-0.3-0.10.3
Cd content in liver1.11.21.51.21.10.9
Co content in liver0.30.40.80.50.10.9
Cu content in liver0.10.10.3-0.5-0.20.1
Fe content in liver0.20.20.4-0.3-0.70.4
K content in liver0.30.30.4-0.7-0.50.3
Mg content in liver0.10.10.2-0.5-0.10.3
Mn content in liver0.20.20.4-0.6-0.4-0.0
Na content in liver0.10.10.10.40.20.2
Rb content in liver0.40.51.10.70.11.0
Se content in liver1.51.82.91.71.50.6
Sr content in liver0.10.10.2-0.2-0.1-0.5
Zn content in liver0.40.51.00.60.11.0