Cant1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 BLA mRNA stability ENSRNOG00000003239 0.21 0.16 8.9e-03 -0 0.03 0.03 0.01 3.5e-01 1.2e-02 1.0e-02 1.1e-01
2 Brain mRNA stability ENSRNOG00000003239 0.08 0.06 4.6e-05 0.05 0.04 0.04 0.04 2.3e-05 9.5e-05 3.1e-04 6.7e-05
3 IL mRNA stability ENSRNOG00000003239 0.23 0.14 1.6e-03 0.06 0.11 0.1 0.09 1.5e-02 1.4e-03 1.8e-03 3.9e-03
4 Liver gene expression ENSRNOG00000003239 0.04 0.02 1.6e-05 0.03 0.03 0.03 0.02 4.4e-04 2.1e-04 1.5e-04 8.7e-04

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail1.55.09.7-3.0-1.0-3.1-0.6
BMI without tail0.71.52.70.1-1.3-1.3-1.7
Body weight0.52.23.4-1.51.7-0.71.8
Epididymis fat weight0.20.41.1-0.6-0.0-1.10.1
Glucose0.50.81.6-1.2-0.4-1.1-0.5
Heart weight1.52.25.3-2.3-0.4-1.80.1
Left kidney weight1.95.410.6-0.53.01.33.2
Right kidney weight0.92.74.9-1.02.20.42.2
Tail length1.13.27.42.71.22.00.3
Length with tail1.76.410.51.13.22.32.9
Length without tail2.24.910.1-1.42.70.63.2
Liver weight, left1.52.54.40.02.11.22.0
Liver weight, right0.91.42.5-0.81.60.31.6
Parametrial fat weight0.00.10.1-0.10.3-0.20.3
Retroperitoneal fat weight0.30.91.70.51.00.91.3
Intraocular pressure0.81.22.21.2-1.5-0.1-1.1
Extensor digitorum longus weight1.45.47.1-1.5-2.6-2.7-2.4
Soleus weight1.13.24.9-2.2-1.1-2.2-1.3
Tibialis anterior weight0.51.72.4-1.5-1.2-1.6-0.8
Tibia length9.627.046.8-0.26.74.16.8
Number of licking bursts0.10.10.1-0.10.40.20.4
Food consumed during 24 hour testing period0.81.02.01.30.31.40.2
Times rat made contact with spout0.10.20.30.5-0.30.2-0.5
Mean time between licks in bursts0.10.10.4-0.60.0-0.3-0.0
Mean num. licks in bursts0.50.61.10.1-1.0-0.5-1.1
Std. dev. time between licks in bursts0.80.91.81.1-0.90.1-1.3
Water consumed over 24 hours0.10.10.20.2-0.20.3-0.5
Indifference point 0 sec1.11.84.00.1-2.0-0.8-1.6
Indifference point AUC0.60.71.70.8-0.40.2-1.3
Indifference point function ln k1.92.74.8-2.2-1.2-2.2-0.1
Indifference point function log k1.92.74.8-2.2-1.2-2.2-0.1
Delay discounting total patch changes 0 sec1.62.65.6-0.0-2.4-1.1-1.8
Delay discounting total patch changes 12 sec2.12.76.10.3-1.9-1.0-2.5
Delay discounting total patch changes 18 sec2.12.73.91.7-2.00.3-2.0
Delay discounting total patch changes 24 sec0.60.81.61.3-0.41.2-0.0
Delay discounting total patch changes 6 sec1.62.44.80.0-1.9-1.0-2.2
Delay discounting time to switch 0 sec0.20.30.50.10.70.70.5
Delay discounting water rate 0 sec0.30.50.80.9-0.7-0.2-0.7
Delay discounting water rate 12 sec2.43.65.9-2.0-1.6-2.4-1.3
Delay discounting water rate 18 sec0.40.61.10.2-1.0-0.7-0.8
Delay discounting water rate 24 sec1.72.44.30.9-2.1-0.9-1.9
Delay discounting water rate 6 sec0.81.22.6-1.3-0.4-1.6-0.3
Locomotor activity0.00.00.10.1-0.1-0.10.3
Locomotor testing distance0.40.62.01.4-0.10.60.2
Locomotor testing rearing0.40.60.90.8-0.90.1-0.9
Light reinforcement 11.12.03.3-0.5-1.6-1.3-1.8
Light reinforcement 20.00.00.1-0.30.1-0.1-0.3
Reaction time number correct1.92.75.51.0-2.1-0.3-2.3
Reaction time mean minus median0.60.71.7-1.30.7-0.10.9
Reaction time mean minus median AUC0.81.01.6-0.61.20.71.3
Reaction time num false alarms0.10.10.40.2-0.6-0.2-0.1
Reaction time num false alarms AUC0.20.30.50.6-0.7-0.2-0.4
Reaction time trials correct on left1.92.75.51.0-2.1-0.3-2.3
Reaction time trials on left1.92.75.31.1-2.0-0.3-2.3
Reaction time mean0.00.10.2-0.40.0-0.10.2
Reaction time mean AUC0.10.10.3-0.6-0.2-0.4-0.0
Median of all reaction times0.00.00.1-0.2-0.1-0.10.1
Reaction time omissions0.50.71.20.11.00.71.1
Reaction time false alarm rate0.20.20.8-0.00.40.00.9
Reaction time premature initiation rate2.43.35.1-0.9-1.8-2.3-1.9
Reaction time premature initiations3.85.59.20.0-2.8-2.2-3.0
Std. dev. reaction times0.30.41.2-1.1-0.0-0.40.2
Reaction time trials completed1.92.75.31.1-2.0-0.3-2.3
Reaction time trials AUC2.23.16.51.1-2.2-0.5-2.5
Social response proportion0.50.51.0-0.7-0.6-1.0-0.4
Social responses0.20.30.8-0.9-0.1-0.5-0.1
Social time1.21.62.4-1.5-1.0-1.5-0.9
Conditioned locomotion0.10.20.30.4-0.6-0.2-0.4
Cocaine response after cond. corrected0.00.10.1-0.10.3-0.10.4
Cocaine response after cond. not corrected0.20.30.30.60.50.50.5
Cocaine response before conditioning0.91.12.41.50.41.30.1
Saline control response0.91.32.61.01.11.60.5
Condit. Reinf. active minus inactive responses1.21.52.31.31.01.51.0
Condit. Reinf. active-inactive response ratio0.70.81.00.80.91.00.7
Condit. Reinf. active responses0.50.61.91.4-0.20.8-0.0
Condit. Reinf. inactive responses0.60.71.30.8-1.2-0.0-0.9
Condit. Reinf. lever presses0.91.21.91.3-1.40.2-1.0
Condit. Reinf. lever reinforcers received0.50.71.91.4-0.70.4-0.4
Pavlov. Cond. lever latency1.21.72.8-1.61.7-0.21.1
Pavlov. Cond. magazine entry latency1.21.43.2-0.3-1.8-1.0-1.1
Pavlov. Cond. change in total contacts1.21.64.10.6-2.0-0.6-1.3
Pavlov. Cond. index score1.01.33.40.7-1.8-0.3-1.0
Pavlov. Cond. latency score0.81.02.80.8-1.7-0.1-0.8
Pavlov. Cond. lever contacts1.11.52.81.7-1.50.4-0.9
Pavlov. Cond. magazine entry number1.51.94.50.22.11.11.3
Pavlov. Cond. intertrial magazine entries2.63.37.82.80.92.10.5
Pavlov. Cond. lever-magazine prob. diff.1.11.43.80.8-1.9-0.3-1.1
Pavlov. Cond. response bias0.91.23.20.7-1.8-0.3-1.0
Conditioned reinforcement - actives0.40.40.60.1-0.6-0.7-0.8
Conditioned reinforcement - inactives0.30.30.6-0.80.50.10.5
Conditioned locomotion0.40.50.80.6-0.6-0.7-0.9
Intermittent access intake day 1-15 change0.50.50.8-0.20.90.80.7
Intermittent access intake escalation0.50.51.00.30.71.00.5
Intermittent access intake escalation 20.60.60.80.90.90.90.2
Intermitt. access day 1 inactive lever presses1.21.32.5-0.21.01.21.6
Intermitt. access day 15 inactive lever presses0.10.10.30.2-0.40.0-0.6
Intermitt. access escalation Index0.60.51.10.50.71.10.5
Intermittent access day 1 total infusions0.30.30.7-0.6-0.4-0.8-0.1
Intermittent access day 15 total infusions0.10.10.10.20.30.40.2
Intermittent access terminal intake (last 3 days)0.20.20.20.30.50.50.4
Intermittent access total infusions0.00.00.0-0.00.0-0.00.1
Intermittent access day 1 locomotion0.40.40.60.3-0.7-0.7-0.8
Intermittent access day 15 total locomotion0.00.00.1-0.10.2-0.20.3
Intermittent access total locomotion0.20.20.30.2-0.4-0.6-0.4
Intermittent access standard deviation2.62.85.8-0.52.10.92.4
Cocaine induced anxiety1.31.51.90.81.41.41.2
Post-drug Anxiety0.60.71.21.10.51.10.2
Baseline Anxiety0.50.50.8-0.9-0.6-0.7-0.6
Lifetime Intake0.00.00.0-0.20.1-0.10.2
Incentive Sensitization - Responses0.60.60.9-0.90.9-0.11.0
Incentive Sensitization - Breakpoint0.80.81.2-1.01.0-0.01.1
Progressive ratio test 1 active lever presses0.20.20.60.8-0.20.3-0.4
Progressive ratio test 1 breakpoint0.10.20.30.6-0.30.1-0.4
Progressive ratio test 1 inactive lever presses0.20.20.4-0.00.60.60.6
Progressive ratio test 2 active lever presses0.10.10.20.50.1-0.2-0.2
Progressive ratio test 2 breakpoint0.10.10.10.40.2-0.3-0.3
Progressive ratio test 2 inactive lever presses0.10.10.3-0.20.50.10.2
Total sessions with >9 infusions0.30.30.8-0.10.60.00.9
Short access day 1 total inactive lever presses0.20.20.60.20.80.40.3
Short access day 10 total inactive lever presses0.50.60.9-0.30.70.90.8
Short access day 1 total infusions0.20.20.5-0.50.30.00.7
Short access day 10 total infusions0.20.20.60.20.20.50.8
Short access total infusions0.10.10.3-0.60.0-0.50.1
Short access day 1 locomotion0.30.30.70.10.8-0.10.8
Short access day 10 total locomotion0.20.20.3-0.50.5-0.10.5
Short access total locomotion0.90.91.4-1.20.8-0.80.9
Compulsive drug intake0.60.60.9-0.9-0.2-1.0-0.7
One hour access (0.3 mA shock)0.30.30.60.3-0.8-0.2-0.7
One hour access (shock baseline)0.30.41.01.0-0.10.70.2
Number of responses in last shaping day1.81.83.6-0.71.70.41.9
Context. condit. distance diff. score0.20.30.70.90.10.6-0.0
Locomotion velocity, session 11.21.32.3-0.71.50.51.5
Locomotion distance, session 11.41.82.8-0.8-1.4-1.7-1.3
Locomotion velocity, session 20.50.50.7-0.4-0.9-0.8-0.7
Locomotion distance, session 23.24.66.2-0.9-2.3-2.5-2.5
Locomotion velocity, session 30.30.40.5-0.50.70.50.7
Locomotion distance, session 31.41.53.3-1.8-0.5-1.4-0.6
Stereotopy head waving bouts, day 30.70.81.60.50.80.91.3
Stereotopy head waving duration, day 31.31.62.01.20.91.41.4
Locomotion velocity, session 70.60.71.71.30.50.9-0.0
Locomotion distance, session 71.62.04.51.1-1.4-0.7-2.1
Stereotopy head waving bouts, day 71.41.62.90.21.21.51.7
Stereotopy head waving duration, day 73.03.76.60.41.82.12.6
Locomotion velocity, session 81.61.93.11.61.11.80.9
Locomotion distance, session 81.72.64.70.5-1.9-1.3-2.2
Degree of sensitization distance2.92.97.62.8-1.10.6-1.6
Degree of sensitization stereotypy0.60.61.1-0.20.70.91.1
Condit. Reinf. active minus inactive responses0.10.10.30.4-0.60.1-0.3
Condit. Reinf. active-inactive response ratio0.60.71.71.3-0.70.5-0.5
Condit. Reinf. active responses0.20.20.5-0.0-0.7-0.2-0.5
Condit. Reinf. inactive responses0.20.30.3-0.5-0.5-0.6-0.5
Incentive salience index mean0.10.10.20.1-0.50.3-0.0
Condit. Reinf. lever presses0.10.10.3-0.4-0.6-0.2-0.0
Time in familiar zone, hab. session 10.60.50.9-0.9-0.9-0.6-0.4
Time in novel zone, hab. session 11.00.91.80.71.31.00.7
Total zone transitions, hab. session 11.01.42.4-0.1-1.3-1.1-1.5
Total locomotion distance, hab. session 10.81.11.6-0.4-1.1-1.2-1.3
Locomotion velocity, hab. session 11.21.72.4-0.6-1.4-1.6-1.5
Time in familiar zone, hab. session 20.20.20.5-0.1-0.4-0.5-0.7
Time in novel zone, hab. session 20.20.20.40.20.40.60.6
Total zone transitions, hab. session 23.74.88.30.0-2.6-2.0-2.9
Total locomotion distance, hab. session 24.05.38.3-0.7-2.5-2.5-2.9
Locomotion velocity, hab. session 23.64.97.7-0.7-2.4-2.4-2.8
Novel to familiar place preference ratio2.12.23.70.3-1.9-1.1-1.9
Novelty place preference1.61.62.90.4-1.7-0.9-1.6
Time in novel zone, NPP test1.92.03.50.3-1.9-1.1-1.8
Total zone transitions, NPP test2.23.15.4-0.1-2.0-1.7-2.3
Total locomotion distance, NPP test5.77.910.5-1.4-3.1-3.1-3.2
Locomotion velocity, NPP test4.66.69.0-1.2-2.8-2.8-3.0
Pavlov. Cond. lever latency0.91.22.01.4-0.90.3-1.4
Pavlov. Cond. magazine entry latency2.32.95.00.61.91.72.2
Pavlov. Cond. change in total contacts1.01.11.9-1.3-0.8-1.4-0.4
Pavlov. Cond. index score1.21.63.6-0.31.40.81.9
Pavlov. Cond. latency score1.62.04.7-0.61.60.82.2
Pavlov. Cond. lever contacts0.70.92.3-1.5-0.0-0.80.6
Pavlov. Cond. magazine entry number2.22.85.5-0.2-1.9-1.4-2.3
Pavlov. Cond. intertrial magazine entries1.51.83.30.0-1.8-0.8-1.8
Pavlov. Cond. lever-magazine prob. diff.0.91.12.6-0.41.10.61.6
Pavlov. Cond. response bias1.01.22.9-0.41.10.61.7
Bone: apparent density0.91.52.31.5-1.20.1-1.5
Bone surface3.05.211.93.40.82.80.8
Bone volume1.52.67.62.8-0.31.7-0.1
Bone: connectivity density1.11.83.92.0-0.80.7-1.5
Bone: cortical apparent density3.04.06.1-2.0-1.7-2.5-1.7
Bone: cortical area1.62.43.8-1.81.4-0.52.0
Bone: cortical porosity1.61.72.80.21.41.31.7
Bone: cortical porosity2.22.43.70.51.61.71.9
Bone: cortical thickness5.38.823.7-4.90.4-3.30.5
Bone: cortical thickness3.33.910.8-3.30.3-2.10.4
Bone: cortical tissue density3.03.95.9-1.9-1.7-2.4-1.8
Bone: elastic displacement2.63.04.9-2.0-1.1-2.2-1.3
Bone: elastic work1.21.64.1-2.00.1-1.50.2
Bone: endosteal estimation2.86.115.53.90.22.81.1
Bone: endosteal perimeter5.511.216.93.91.94.13.0
Bone: final force0.71.11.9-0.91.4-0.01.3
Bone: final moment0.61.01.7-0.91.3-0.01.3
Bone: marrow area2.96.215.43.90.32.81.1
Bone: maximum diameter4.07.312.51.52.62.73.5
Bone: maximum force0.30.61.1-0.51.0-0.11.0
Bone: maximum moment0.30.51.1-0.50.9-0.11.0
Bone: minimum diameter1.62.94.71.31.21.92.2
Bone: periosteal estimation1.32.64.31.51.11.62.1
Bone: periosteal perimeter3.15.110.70.42.51.93.3
Bone: post-yield work0.71.01.90.6-1.4-0.6-1.2
Bone: stiffness0.81.22.2-0.81.40.11.5
Bone: tissue strength1.41.32.0-0.1-1.4-1.2-1.4
Bone: trabecular number0.40.71.71.3-0.40.7-0.7
Bone: trabecular spacing0.10.10.4-0.40.2-0.00.6
Bone: trabecular thickness0.40.40.60.6-0.8-0.1-0.8
Bone: trabecular tissue density0.40.51.2-0.50.8-0.01.1
Breakpoint value in progressive ratio session0.50.51.71.3-0.60.1-0.4
Distance traveled before self-admin1.31.42.2-0.01.31.41.5
Distance traveled after self-admin1.31.52.21.2-1.5-0.3-1.5
Delta time in closed arm before/after self-admin1.71.63.51.90.91.40.5
Delta time in open arm before/after self-admin0.90.81.1-0.8-1.0-0.7-1.0
Diff in mean of infusions in LGA sessions0.60.72.01.40.10.80.5
Extinction: sum of active levers before priming0.50.50.9-0.8-0.5-0.9-0.2
Active lever presses in extinction session 60.20.20.50.7-0.2-0.1-0.6
Delta distance traveled before/after self-admin2.72.95.20.5-2.0-1.4-2.3
Delta ambulatory time before/after self-admin3.13.36.21.0-2.1-1.2-2.5
Time in closed arm before self-admin0.70.82.2-1.50.2-0.90.2
Time in closed arm after self-admin0.90.92.10.31.10.61.4
Time in open arm before self-admin0.40.40.70.50.80.60.6
Time in open arm after self-admin0.30.30.90.2-0.6-0.0-0.9
Sum of active levers in priming session hrs 5-60.10.10.20.3-0.40.10.0
Time to tail flick, vehicle, before self-admin1.01.02.4-1.6-0.5-1.0-0.6
Time to tail flick, vehicle, after self-admin1.41.54.7-2.20.2-1.00.6
Time to tail flick, test, before self-admin0.30.30.80.90.30.70.1
Time to tail flick, test, after self-admin0.40.40.9-0.11.00.50.8
Delta time to tail flick, vehicle, before/after SA0.10.10.2-0.1-0.4-0.2-0.1
Delta time to tail flick, test, before/after SA0.60.61.2-1.10.7-0.20.7
Ambulatory time before self-admin1.81.93.5-0.41.51.31.9
Ambulatory time after self-admin0.60.71.31.1-0.80.0-1.0
Total heroin consumption0.91.12.40.60.81.01.5
Area under the delay curve2.52.73.41.01.81.81.8
Delay disc. indifference point, 0s delay1.71.83.10.01.81.21.6
Delay disc. indifference point, 16s delay0.10.10.20.5-0.30.2-0.4
Delay disc. indifference point, 2s delay1.82.02.91.01.41.41.7
Delay disc. indifference point, 24s delay0.10.10.10.40.20.2-0.0
Delay disc. indifference point, 4s delay2.83.04.40.72.11.81.9
Delay disc. indifference point, 8s delay5.55.77.91.12.82.62.6
Delay discount exponential model param2.72.83.6-1.0-1.8-1.9-1.9
Delay discount hyperbolic model param2.82.93.8-1.0-1.8-1.9-2.0
Fecal boli incidents, locomotor time 10.60.71.80.3-1.3-0.8-0.6
Change in fecal boli incidents, locomotor task0.50.40.6-0.7-0.5-0.8-0.5
Time >=10cm from walls, locomotor time 10.60.61.31.10.21.10.1
Bouts of movement, locomotor time 11.11.22.6-1.6-0.7-1.3-0.2
Total resting periods, locomotor time 11.21.32.7-1.6-0.9-1.3-0.4
Rest time, locomotor task time 10.60.61.5-1.2-0.1-1.00.2
Distance moved, locomotor task time 10.40.50.91.00.30.8-0.3
Vertical activity count, locomotor time 10.40.41.01.0-0.20.3-0.7
Time >=10cm from walls, locomotor time 20.20.20.5-0.70.2-0.5-0.3
Bouts of movement, locomotor time 20.10.10.20.5-0.20.20.3
Total resting periods, locomotor time 20.20.20.50.7-0.10.30.3
Rest time, locomotor task time 20.50.51.41.20.00.50.7
Distance moved, locomotor task time 20.70.81.9-1.40.9-0.6-0.0
Vertical activity count, locomotor time 20.30.30.6-0.80.2-0.70.1
Weight adjusted by age0.50.61.61.30.50.70.1
Seeking ratio, delayed vs. immediate footshock0.00.00.10.10.30.2-0.2
Locomotion in novel chamber1.31.63.71.9-0.71.2-0.9
Locomotion in novel chamber post-restriction0.70.92.31.50.11.0-0.3
Progressive ratio0.40.51.1-0.2-1.1-0.7-0.5
Food seeking constrained by brief footshock0.30.40.8-0.7-0.1-0.20.9
Seeking ratio, punishment vs. effort0.40.61.0-0.00.80.81.0
Run reversals in cocaine runway, females0.40.30.7-0.8-0.8-0.30.2
Run reversals in cocaine runway, males0.40.30.9-0.50.4-1.00.1
Latency to leave start box in cocaine runway0.80.91.3-0.3-1.1-1.0-1.1
Latency to leave start box in cocaine runway, F0.60.71.6-0.0-0.9-0.7-1.3
Latency to leave start box in cocaine runway, M1.51.52.4-0.7-1.6-1.4-1.1
Cd content in liver2.73.04.5-2.1-1.2-2.1-1.3
Co content in liver1.21.42.1-0.6-1.4-1.1-1.4
Cu content in liver0.10.20.5-0.70.1-0.40.2
Fe content in liver0.60.81.61.2-0.11.30.2
K content in liver0.10.10.30.4-0.00.5-0.1
Mg content in liver1.31.42.70.3-1.5-0.7-1.7
Mn content in liver1.21.42.50.51.61.21.1
Na content in liver0.70.71.40.70.71.20.7
Rb content in liver1.11.43.10.1-1.2-1.1-1.8
Se content in liver0.60.81.81.30.21.1-0.1
Sr content in liver0.50.51.3-1.10.1-0.8-0.0
Zn content in liver0.60.61.5-0.90.60.11.2