Pafah1b1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000002755 0.04 0.03 5.7e-03 0.02 0.01 0.01 0.01 5.5e-03 1.3e-02 3.0e-02 1.5e-02
2 Brain gene expression ENSRNOG00000002755 0.03 0.03 3.3e-03 0.03 0.02 0.02 0.02 2.2e-03 2.4e-03 9.7e-03 2.8e-03
3 Liver mRNA stability ENSRNOG00000002755 0.14 0.09 4.2e-07 0.05 0.05 0.05 0.05 2.2e-06 5.2e-06 3.2e-06 3.4e-06
4 OFC intron excision ratio chr10:59566151:59591489 0.13 0.09 1.6e-03 0.1 0.05 0.11 0.04 2.6e-03 2.5e-02 1.5e-03 3.3e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail0.92.96.0-0.7-2.40.32.3
BMI without tail0.30.71.1-1.0-1.10.60.5
Body weight1.25.28.6-2.9-2.12.80.4
Epididymis fat weight3.68.312.4-2.8-3.53.01.9
Glucose1.82.83.61.81.9-1.8-0.8
Heart weight0.30.40.8-0.9-0.60.50.3
Left kidney weight1.54.38.90.33.0-0.4-2.8
Right kidney weight1.33.67.20.12.7-0.1-2.7
Tail length2.67.910.7-3.30.83.2-3.1
Length with tail1.65.79.8-2.80.33.1-2.2
Length without tail0.92.14.2-1.8-0.92.1-0.1
Liver weight, left1.21.92.7-1.60.51.6-1.5
Liver weight, right0.91.53.0-1.6-0.31.7-0.6
Parametrial fat weight5.110.116.3-4.0-2.93.90.6
Retroperitoneal fat weight0.00.00.10.4-0.0-0.00.2
Intraocular pressure1.82.55.11.4-1.4-1.02.3
Extensor digitorum longus weight2.911.823.7-1.6-4.91.44.4
Soleus weight2.77.911.3-3.4-2.93.30.8
Tibialis anterior weight5.017.133.8-2.9-5.82.64.4
Tibia length1.13.16.9-1.21.81.0-2.6
Number of licking bursts0.20.20.40.60.6-0.2-0.3
Food consumed during 24 hour testing period0.20.30.5-0.5-0.70.40.4
Times rat made contact with spout0.91.02.2-0.11.3-0.4-1.5
Mean time between licks in bursts0.60.81.1-0.90.41.1-1.0
Mean num. licks in bursts0.20.30.6-0.70.3-0.0-0.8
Std. dev. time between licks in bursts0.10.10.3-0.2-0.50.10.5
Water consumed over 24 hours0.91.02.4-0.80.80.7-1.5
Indifference point 0 sec0.00.10.1-0.3-0.4-0.10.3
Indifference point AUC0.60.71.11.1-0.3-0.80.9
Indifference point function ln k0.40.61.2-1.1-0.70.90.1
Indifference point function log k0.40.61.2-1.1-0.70.90.1
Delay discounting total patch changes 0 sec0.00.10.1-0.1-0.4-0.20.3
Delay discounting total patch changes 12 sec0.40.61.20.31.1-0.6-0.9
Delay discounting total patch changes 18 sec0.20.30.50.40.7-0.4-0.6
Delay discounting total patch changes 24 sec0.60.81.30.90.9-1.2-0.3
Delay discounting total patch changes 6 sec0.40.71.41.00.2-1.20.4
Delay discounting time to switch 0 sec1.32.04.4-0.11.90.2-2.1
Delay discounting water rate 0 sec0.40.71.40.5-0.8-0.61.2
Delay discounting water rate 12 sec0.20.30.4-0.4-0.70.60.4
Delay discounting water rate 18 sec2.12.85.6-1.1-2.41.21.7
Delay discounting water rate 24 sec0.20.20.50.1-0.6-0.20.7
Delay discounting water rate 6 sec0.10.20.40.60.1-0.60.4
Locomotor activity0.20.30.6-0.2-0.80.30.7
Locomotor testing distance0.00.00.10.3-0.0-0.20.2
Locomotor testing rearing0.50.81.70.7-0.9-0.41.3
Light reinforcement 10.00.00.10.1-0.30.00.3
Light reinforcement 21.51.94.10.62.0-0.6-1.7
Reaction time number correct0.10.10.3-0.3-0.50.20.2
Reaction time mean minus median0.20.20.60.80.4-0.40.0
Reaction time mean minus median AUC0.30.40.90.5-0.7-0.11.0
Reaction time num false alarms1.21.72.51.4-0.7-1.31.6
Reaction time num false alarms AUC1.11.62.31.3-0.6-1.41.5
Reaction time trials correct on left0.10.10.3-0.3-0.50.20.2
Reaction time trials on left0.10.10.3-0.3-0.50.10.2
Reaction time mean0.20.20.60.50.80.0-0.4
Reaction time mean AUC0.30.40.80.90.9-0.4-0.3
Median of all reaction times0.20.30.80.40.90.0-0.6
Reaction time omissions0.20.20.30.40.6-0.5-0.4
Reaction time false alarm rate0.81.21.61.2-0.4-1.21.3
Reaction time premature initiation rate0.40.60.9-0.7-1.00.70.7
Reaction time premature initiations0.60.91.6-0.8-1.30.70.9
Std. dev. reaction times0.30.30.70.80.6-0.6-0.2
Reaction time trials completed0.10.10.3-0.3-0.50.10.2
Reaction time trials AUC0.10.10.3-0.2-0.50.00.2
Social response proportion2.62.85.8-2.4-0.42.0-1.1
Social responses1.21.53.0-1.7-0.91.5-0.2
Social time1.11.52.7-1.6-0.61.6-0.4
Conditioned locomotion0.91.11.51.21.2-1.2-0.6
Cocaine response after cond. corrected0.30.30.6-0.60.20.8-0.4
Cocaine response after cond. not corrected0.40.51.0-0.9-0.21.0-0.2
Cocaine response before conditioning0.70.91.8-0.9-1.30.70.7
Saline control response0.60.91.7-0.2-1.30.21.3
Condit. Reinf. active minus inactive responses0.81.01.9-0.4-1.40.41.3
Condit. Reinf. active-inactive response ratio0.10.10.2-0.4-0.10.50.0
Condit. Reinf. active responses1.82.55.3-0.1-2.20.12.3
Condit. Reinf. inactive responses3.23.98.40.5-2.5-0.72.9
Condit. Reinf. lever presses0.71.01.61.2-0.3-1.21.0
Condit. Reinf. lever reinforcers received1.92.75.80.0-2.2-0.22.4
Pavlov. Cond. lever latency0.60.81.7-1.3-0.51.2-0.2
Pavlov. Cond. magazine entry latency0.60.61.20.31.1-0.2-1.1
Pavlov. Cond. change in total contacts0.40.60.90.70.8-1.0-0.4
Pavlov. Cond. index score0.81.01.81.30.8-1.2-0.2
Pavlov. Cond. latency score1.11.32.31.51.0-1.4-0.2
Pavlov. Cond. lever contacts0.30.40.70.80.7-0.7-0.3
Pavlov. Cond. magazine entry number0.60.81.3-0.6-1.20.71.0
Pavlov. Cond. intertrial magazine entries1.51.93.7-0.8-1.90.91.6
Pavlov. Cond. lever-magazine prob. diff.0.71.01.71.30.8-1.2-0.1
Pavlov. Cond. response bias0.40.60.70.80.9-0.7-0.5
Conditioned reinforcement - actives1.91.93.8-0.4-1.90.51.8
Conditioned reinforcement - inactives1.21.32.5-0.4-1.60.51.6
Conditioned locomotion0.20.30.80.60.1-0.90.1
Intermittent access intake day 1-15 change2.02.02.71.7-0.3-1.61.6
Intermittent access intake escalation2.42.34.22.00.2-1.91.3
Intermittent access intake escalation 22.82.85.72.41.1-2.00.4
Intermitt. access day 1 inactive lever presses0.80.81.41.10.8-1.2-0.1
Intermitt. access day 15 inactive lever presses0.20.20.70.1-0.40.20.8
Intermitt. access escalation Index3.12.84.1-1.80.61.9-2.0
Intermittent access day 1 total infusions1.01.12.1-0.7-1.40.71.2
Intermittent access day 15 total infusions2.02.25.20.9-1.4-0.92.3
Intermittent access terminal intake (last 3 days)1.21.33.0-0.0-1.50.31.7
Intermittent access total infusions1.11.23.00.2-1.3-0.21.7
Intermittent access day 1 locomotion0.00.00.1-0.4-0.20.10.0
Intermittent access day 15 total locomotion0.60.60.90.9-0.2-0.90.8
Intermittent access total locomotion0.10.10.30.1-0.4-0.20.6
Intermittent access standard deviation3.53.85.62.2-0.7-2.02.4
Cocaine induced anxiety0.50.60.90.9-0.3-0.70.9
Post-drug Anxiety0.10.10.20.1-0.40.20.5
Baseline Anxiety0.10.10.2-0.50.10.5-0.3
Lifetime Intake1.21.33.20.2-1.4-0.11.8
Incentive Sensitization - Responses1.51.53.2-0.5-1.60.41.8
Incentive Sensitization - Breakpoint1.21.22.5-0.4-1.40.41.6
Progressive ratio test 1 active lever presses1.71.73.3-0.9-1.80.81.4
Progressive ratio test 1 breakpoint2.72.84.9-1.4-2.21.31.6
Progressive ratio test 1 inactive lever presses0.10.10.30.1-0.4-0.30.6
Progressive ratio test 2 active lever presses2.02.24.2-0.6-2.00.52.1
Progressive ratio test 2 breakpoint2.02.24.5-0.5-2.00.42.1
Progressive ratio test 2 inactive lever presses1.41.63.8-0.1-1.60.11.9
Total sessions with >9 infusions0.40.40.7-0.6-0.80.30.7
Short access day 1 total inactive lever presses0.10.10.2-0.4-0.50.00.2
Short access day 10 total inactive lever presses0.10.20.3-0.30.40.0-0.6
Short access day 1 total infusions0.90.91.80.8-0.7-0.91.3
Short access day 10 total infusions2.02.14.6-0.1-2.00.22.2
Short access total infusions1.01.12.70.4-1.1-0.41.6
Short access day 1 locomotion0.50.61.10.7-0.3-1.00.8
Short access day 10 total locomotion0.20.20.60.40.2-0.80.2
Short access total locomotion0.40.40.70.4-0.4-0.80.7
Compulsive drug intake1.11.02.2-0.90.80.7-1.5
One hour access (0.3 mA shock)1.92.35.2-0.1-1.90.12.3
One hour access (shock baseline)2.32.66.40.3-2.0-0.12.5
Number of responses in last shaping day1.11.22.61.30.3-1.60.5
Context. condit. distance diff. score1.21.52.4-1.1-1.31.60.6
Locomotion velocity, session 12.83.05.2-2.1-1.62.30.0
Locomotion distance, session 10.40.50.8-0.5-0.90.50.7
Locomotion velocity, session 20.60.71.3-0.8-0.81.10.4
Locomotion distance, session 21.01.52.9-0.9-1.70.81.2
Locomotion velocity, session 33.54.18.11.22.8-1.3-2.3
Locomotion distance, session 30.20.20.50.3-0.1-0.70.4
Stereotopy head waving bouts, day 30.30.40.7-0.40.70.4-0.8
Stereotopy head waving duration, day 30.30.40.70.70.8-0.6-0.3
Locomotion velocity, session 71.21.33.0-0.3-1.70.11.5
Locomotion distance, session 72.22.86.1-0.6-2.50.52.1
Stereotopy head waving bouts, day 70.30.40.6-0.8-0.50.70.3
Stereotopy head waving duration, day 70.40.50.8-0.9-0.80.70.5
Locomotion velocity, session 80.20.30.4-0.4-0.60.60.4
Locomotion distance, session 82.03.04.3-1.8-1.92.10.9
Degree of sensitization distance1.51.52.5-1.0-1.61.40.9
Degree of sensitization stereotypy0.90.91.6-1.2-0.81.30.1
Condit. Reinf. active minus inactive responses0.20.20.6-0.10.6-0.1-0.8
Condit. Reinf. active-inactive response ratio1.92.14.9-0.21.9-0.1-2.2
Condit. Reinf. active responses0.20.20.5-0.2-0.70.10.6
Condit. Reinf. inactive responses3.13.78.50.2-2.50.12.9
Incentive salience index mean0.30.41.0-0.50.60.2-1.0
Condit. Reinf. lever presses0.71.01.9-1.4-0.11.1-0.8
Time in familiar zone, hab. session 11.11.02.00.4-1.1-0.71.4
Time in novel zone, hab. session 10.90.81.8-0.30.90.8-1.3
Total zone transitions, hab. session 11.72.44.8-0.1-2.10.32.2
Total locomotion distance, hab. session 10.50.71.4-0.3-1.20.61.0
Locomotion velocity, hab. session 10.40.61.2-0.2-1.10.41.0
Time in familiar zone, hab. session 21.21.32.5-0.3-1.60.41.5
Time in novel zone, hab. session 22.92.95.80.62.4-0.7-2.2
Total zone transitions, hab. session 20.70.91.6-0.8-1.30.80.9
Total locomotion distance, hab. session 20.10.10.2-0.40.10.5-0.4
Locomotion velocity, hab. session 20.10.10.2-0.30.10.4-0.4
Novel to familiar place preference ratio0.50.51.20.6-0.3-1.10.7
Novelty place preference0.10.10.40.2-0.2-0.60.3
Time in novel zone, NPP test0.10.10.2-0.0-0.4-0.40.4
Total zone transitions, NPP test1.01.42.7-0.2-1.70.41.7
Total locomotion distance, NPP test0.40.51.20.5-0.7-0.21.1
Locomotion velocity, NPP test0.40.60.91.0-0.3-0.71.0
Pavlov. Cond. lever latency0.30.40.70.4-0.6-0.40.9
Pavlov. Cond. magazine entry latency0.50.61.1-1.00.10.8-0.8
Pavlov. Cond. change in total contacts0.40.41.00.41.0-0.2-0.8
Pavlov. Cond. index score0.60.81.2-1.10.30.9-1.0
Pavlov. Cond. latency score0.91.11.6-1.30.41.1-1.2
Pavlov. Cond. lever contacts0.30.40.7-0.60.50.6-0.8
Pavlov. Cond. magazine entry number0.10.20.20.5-0.1-0.50.4
Pavlov. Cond. intertrial magazine entries0.91.02.30.7-1.0-0.51.5
Pavlov. Cond. lever-magazine prob. diff.0.50.60.9-1.00.30.8-0.8
Pavlov. Cond. response bias0.20.30.4-0.60.20.6-0.6
Bone: apparent density2.33.97.0-1.5-2.61.71.8
Bone surface2.23.98.0-1.1-2.81.02.3
Bone volume2.44.18.5-1.0-2.91.02.4
Bone: connectivity density3.35.29.9-1.7-3.11.72.3
Bone: cortical apparent density0.30.41.01.00.3-0.60.4
Bone: cortical area0.91.32.11.31.1-1.5-0.4
Bone: cortical porosity0.20.30.4-0.5-0.60.50.3
Bone: cortical porosity0.00.00.1-0.3-0.30.20.0
Bone: cortical thickness3.25.39.91.63.2-1.8-2.3
Bone: cortical thickness0.91.02.20.11.4-0.3-1.5
Bone: cortical tissue density0.20.30.70.80.2-0.50.4
Bone: elastic displacement0.60.71.41.20.6-1.00.0
Bone: elastic work3.74.88.01.62.8-2.1-2.1
Bone: endosteal estimation0.20.51.10.2-0.8-0.11.0
Bone: endosteal perimeter1.32.76.00.2-2.2-0.22.4
Bone: final force0.61.02.3-0.21.2-0.5-1.5
Bone: final moment0.50.91.8-0.11.1-0.7-1.3
Bone: marrow area0.20.41.00.3-0.8-0.11.0
Bone: maximum diameter0.71.32.41.0-0.8-1.11.6
Bone: maximum force0.61.12.20.01.4-0.6-1.5
Bone: maximum moment0.50.91.60.21.3-0.7-1.3
Bone: minimum diameter0.20.40.70.30.8-0.0-0.8
Bone: periosteal estimation0.20.30.60.80.3-0.80.2
Bone: periosteal perimeter0.40.71.30.6-0.7-0.91.2
Bone: post-yield work0.40.51.0-1.0-0.41.0-0.2
Bone: stiffness0.91.43.0-1.7-0.81.3-0.3
Bone: tissue strength1.91.83.30.71.8-1.1-1.5
Bone: trabecular number2.43.76.8-1.3-2.61.71.9
Bone: trabecular spacing0.30.41.20.50.4-1.1-0.1
Bone: trabecular thickness0.00.00.1-0.1-0.10.30.1
Bone: trabecular tissue density1.52.03.91.32.0-1.0-1.3
Breakpoint value in progressive ratio session1.11.22.2-1.5-1.01.30.2
Distance traveled before self-admin1.01.11.61.11.2-1.2-0.4
Distance traveled after self-admin0.00.00.1-0.3-0.00.1-0.3
Delta time in closed arm before/after self-admin0.10.10.10.4-0.1-0.10.3
Delta time in open arm before/after self-admin0.30.30.5-0.5-0.70.10.5
Diff in mean of infusions in LGA sessions0.80.91.7-1.3-0.21.2-0.5
Extinction: sum of active levers before priming3.03.14.9-1.6-2.21.61.5
Active lever presses in extinction session 61.21.12.1-0.9-1.40.71.1
Delta distance traveled before/after self-admin1.41.52.7-1.6-1.11.5-0.0
Delta ambulatory time before/after self-admin1.11.22.1-1.4-0.81.4-0.2
Time in closed arm before self-admin1.01.22.1-1.4-0.41.4-0.7
Time in closed arm after self-admin0.30.30.7-0.10.50.5-0.8
Time in open arm before self-admin1.51.62.21.51.3-1.4-0.4
Time in open arm after self-admin0.91.02.41.10.2-1.50.8
Sum of active levers in priming session hrs 5-62.32.33.3-1.8-1.81.40.8
Time to tail flick, vehicle, before self-admin3.63.65.6-1.9-2.41.81.4
Time to tail flick, vehicle, after self-admin0.40.40.9-0.0-0.90.30.9
Time to tail flick, test, before self-admin0.50.50.8-0.80.20.9-0.7
Time to tail flick, test, after self-admin0.40.40.7-0.60.20.8-0.6
Delta time to tail flick, vehicle, before/after SA1.41.42.51.61.0-1.4-0.3
Delta time to tail flick, test, before/after SA0.50.51.00.4-0.7-0.41.0
Ambulatory time before self-admin1.41.52.61.01.6-1.1-1.1
Ambulatory time after self-admin1.01.11.8-1.20.41.0-1.4
Total heroin consumption4.15.08.2-2.9-2.22.50.8
Area under the delay curve0.30.30.40.30.6-0.5-0.6
Delay disc. indifference point, 0s delay0.10.10.3-0.3-0.50.10.4
Delay disc. indifference point, 16s delay0.10.10.30.5-0.1-0.40.4
Delay disc. indifference point, 2s delay0.30.40.70.50.9-0.2-0.7
Delay disc. indifference point, 24s delay0.00.00.10.1-0.2-0.20.2
Delay disc. indifference point, 4s delay0.10.10.3-0.20.30.3-0.5
Delay disc. indifference point, 8s delay0.10.10.3-0.00.4-0.0-0.5
Delay discount exponential model param0.30.30.5-0.2-0.70.30.7
Delay discount hyperbolic model param0.20.20.4-0.2-0.60.30.7
Fecal boli incidents, locomotor time 10.10.10.2-0.30.30.3-0.4
Change in fecal boli incidents, locomotor task0.30.30.50.20.7-0.3-0.7
Time >=10cm from walls, locomotor time 10.20.20.60.2-0.2-0.80.4
Bouts of movement, locomotor time 10.10.10.1-0.3-0.40.20.3
Total resting periods, locomotor time 10.10.10.3-0.2-0.40.10.5
Rest time, locomotor task time 10.30.30.70.80.0-0.50.6
Distance moved, locomotor task time 10.10.10.3-0.1-0.6-0.00.4
Vertical activity count, locomotor time 10.30.30.8-0.3-0.90.00.6
Time >=10cm from walls, locomotor time 20.40.51.50.30.5-1.2-0.1
Bouts of movement, locomotor time 20.00.00.0-0.00.00.2-0.2
Total resting periods, locomotor time 20.00.00.1-0.2-0.30.2-0.0
Rest time, locomotor task time 20.30.30.60.4-0.60.40.8
Distance moved, locomotor task time 20.30.30.60.6-0.1-0.80.4
Vertical activity count, locomotor time 20.30.40.70.10.8-0.3-0.8
Weight adjusted by age1.61.83.4-0.9-1.90.71.6
Seeking ratio, delayed vs. immediate footshock0.91.12.01.30.7-1.40.1
Locomotion in novel chamber3.54.37.62.80.5-2.71.5
Locomotion in novel chamber post-restriction0.20.20.30.4-0.2-0.50.6
Progressive ratio0.30.40.90.2-0.5-0.51.0
Food seeking constrained by brief footshock0.10.20.30.20.5-0.2-0.5
Seeking ratio, punishment vs. effort0.70.81.90.11.10.2-1.4
Run reversals in cocaine runway, females0.10.10.30.60.0-0.30.4
Run reversals in cocaine runway, males0.90.91.81.1-0.4-0.71.3
Latency to leave start box in cocaine runway0.30.40.9-0.20.7-0.0-0.9
Latency to leave start box in cocaine runway, F1.01.12.7-0.61.10.4-1.6
Latency to leave start box in cocaine runway, M0.00.00.0-0.1-0.1-0.2-0.1
Cd content in liver1.21.42.1-0.5-1.51.31.2
Co content in liver0.00.00.10.2-0.1-0.40.1
Cu content in liver0.50.61.40.11.0-0.1-1.2
Fe content in liver0.70.91.3-1.00.41.2-1.0
K content in liver1.31.33.1-0.91.00.4-1.8
Mg content in liver0.20.20.50.3-0.1-0.70.3
Mn content in liver0.00.00.0-0.2-0.2-0.00.0
Na content in liver1.81.93.90.72.0-0.8-1.6
Rb content in liver1.31.73.3-0.1-1.8-0.01.8
Se content in liver0.80.91.80.41.3-0.4-1.3
Sr content in liver0.30.30.5-0.5-0.70.50.5
Zn content in liver0.40.51.00.2-0.9-0.31.0