Rab44

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000001869 0.15 0.13 4.3e-15 0.14 0.13 0.13 0.13 9.2e-15 3.0e-14 3.8e-14 3.8e-14
2 Adipose mRNA stability ENSRNOG00000001869 0.02 0.02 5.5e-03 0 0.02 0 0 1.2e-01 6.2e-03 2.4e-01 1.6e-01
3 OFC gene expression ENSRNOG00000001869 0.2 0.18 7.8e-04 0.17 0.16 0.14 0.17 7.3e-05 1.3e-04 3.8e-04 8.9e-05
4 PL gene expression ENSRNOG00000001869 0.07 0.06 1.6e-05 0.07 0.06 0.04 0.07 4.1e-06 1.4e-05 2.8e-04 3.0e-06

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail1.85.76.22.32.4-2.3-2.5
BMI without tail1.32.73.11.51.6-1.7-1.8
Body weight6.426.927.25.25.2-5.1-5.2
Epididymis fat weight1.53.53.71.91.8-1.8-1.9
Glucose0.00.00.0-0.1-0.00.0-0.0
Heart weight2.53.63.7-1.9-1.91.91.9
Left kidney weight3.08.510.03.23.0-2.8-2.8
Right kidney weight4.011.411.73.43.4-3.4-3.3
Tail length1.44.24.72.01.9-2.2-2.1
Length with tail2.79.810.43.23.1-3.2-3.0
Length without tail1.84.04.82.22.0-1.9-1.9
Liver weight, left5.79.29.73.03.0-3.0-3.1
Liver weight, right2.94.85.02.22.1-2.2-2.2
Parametrial fat weight2.34.54.82.12.1-2.1-2.2
Retroperitoneal fat weight1.34.34.52.12.1-2.0-2.1
Intraocular pressure1.11.61.91.31.4-1.2-1.2
Extensor digitorum longus weight0.20.80.8-0.8-0.90.90.9
Soleus weight0.20.70.70.80.8-0.7-0.9
Tibialis anterior weight0.93.23.4-1.8-1.81.91.7
Tibia length2.98.28.72.92.9-2.9-2.7
Number of licking bursts0.50.60.6-0.7-0.80.70.7
Food consumed during 24 hour testing period0.40.50.50.60.7-0.6-0.7
Times rat made contact with spout2.73.13.3-1.7-1.81.71.8
Mean time between licks in bursts0.50.71.0-0.8-0.90.81.0
Mean num. licks in bursts0.20.20.3-0.5-0.40.50.6
Std. dev. time between licks in bursts0.10.10.10.20.3-0.2-0.3
Water consumed over 24 hours1.51.71.8-1.3-1.31.31.3
Indifference point 0 sec0.30.40.50.60.7-0.6-0.7
Indifference point AUC0.00.00.1-0.2-0.10.20.1
Indifference point function ln k0.10.10.2-0.4-0.40.30.4
Indifference point function log k0.10.10.2-0.4-0.40.30.4
Delay discounting total patch changes 0 sec0.20.40.40.60.6-0.6-0.7
Delay discounting total patch changes 12 sec0.00.00.0-0.2-0.10.2-0.1
Delay discounting total patch changes 18 sec0.60.71.00.80.9-0.7-1.0
Delay discounting total patch changes 24 sec0.40.50.7-0.8-0.70.70.7
Delay discounting total patch changes 6 sec0.00.00.10.10.2-0.2-0.2
Delay discounting time to switch 0 sec1.01.51.61.21.3-1.2-1.2
Delay discounting water rate 0 sec0.20.40.5-0.5-0.60.70.6
Delay discounting water rate 12 sec0.10.20.2-0.4-0.50.50.5
Delay discounting water rate 18 sec0.50.60.8-0.7-0.80.90.8
Delay discounting water rate 24 sec0.30.50.6-0.7-0.70.70.6
Delay discounting water rate 6 sec0.10.20.2-0.5-0.50.30.3
Locomotor activity0.10.20.20.40.4-0.4-0.5
Locomotor testing distance0.00.00.0-0.1-0.0-0.0-0.1
Locomotor testing rearing1.01.62.01.11.2-1.3-1.4
Light reinforcement 12.24.04.51.91.9-2.0-2.1
Light reinforcement 22.53.33.71.91.9-1.7-1.8
Reaction time number correct0.71.01.21.01.0-1.1-1.0
Reaction time mean minus median0.20.30.30.50.5-0.5-0.5
Reaction time mean minus median AUC0.20.20.20.40.5-0.4-0.5
Reaction time num false alarms0.10.10.1-0.3-0.30.40.2
Reaction time num false alarms AUC0.50.80.9-0.8-0.90.90.8
Reaction time trials correct on left0.71.01.21.01.0-1.1-1.0
Reaction time trials on left0.71.01.10.91.0-1.1-1.0
Reaction time mean0.20.20.30.40.5-0.5-0.4
Reaction time mean AUC0.50.70.80.80.9-0.8-0.8
Median of all reaction times0.20.30.30.50.6-0.5-0.4
Reaction time omissions0.00.00.00.20.2-0.1-0.1
Reaction time false alarm rate1.41.92.1-1.3-1.41.51.3
Reaction time premature initiation rate0.20.20.3-0.2-0.50.50.5
Reaction time premature initiations0.10.10.20.40.3-0.3-0.2
Std. dev. reaction times0.00.00.00.20.2-0.2-0.1
Reaction time trials completed0.71.01.10.91.0-1.1-1.0
Reaction time trials AUC0.71.01.10.91.0-1.1-1.0
Social response proportion0.00.00.0-0.1-0.0-0.0-0.0
Social responses0.10.10.2-0.4-0.30.30.2
Social time0.10.10.2-0.4-0.40.30.3
Conditioned locomotion2.93.43.41.81.8-1.9-1.8
Cocaine response after cond. corrected0.40.50.60.70.8-0.6-0.7
Cocaine response after cond. not corrected0.50.50.60.70.8-0.6-0.8
Cocaine response before conditioning0.00.00.10.00.1-0.2-0.3
Saline control response0.70.91.10.80.9-1.0-1.1
Condit. Reinf. active minus inactive responses0.60.80.9-0.8-0.90.90.9
Condit. Reinf. active-inactive response ratio0.20.30.3-0.4-0.60.40.6
Condit. Reinf. active responses0.60.80.9-0.9-0.90.90.9
Condit. Reinf. inactive responses0.00.00.10.10.2-0.1-0.3
Condit. Reinf. lever presses3.75.25.6-2.4-2.32.32.2
Condit. Reinf. lever reinforcers received1.31.91.9-1.4-1.41.41.3
Pavlov. Cond. lever latency2.02.83.21.81.6-1.7-1.5
Pavlov. Cond. magazine entry latency0.20.20.20.50.4-0.4-0.5
Pavlov. Cond. change in total contacts1.21.71.9-1.4-1.31.31.2
Pavlov. Cond. index score0.40.50.6-0.8-0.70.80.7
Pavlov. Cond. latency score0.20.30.3-0.6-0.60.60.5
Pavlov. Cond. lever contacts1.31.82.1-1.5-1.31.41.2
Pavlov. Cond. magazine entry number0.00.00.1-0.2-0.20.20.2
Pavlov. Cond. intertrial magazine entries0.50.70.9-0.7-0.80.81.0
Pavlov. Cond. lever-magazine prob. diff.0.20.30.3-0.5-0.50.50.4
Pavlov. Cond. response bias0.70.91.1-1.0-1.01.00.8
Conditioned reinforcement - actives0.60.60.70.80.8-0.6-0.8
Conditioned reinforcement - inactives0.10.10.1-0.3-0.30.20.2
Conditioned locomotion0.60.70.80.80.8-0.8-0.9
Intermittent access intake day 1-15 change1.01.01.21.11.0-1.0-1.0
Intermittent access intake escalation1.71.61.81.41.3-1.2-1.3
Intermittent access intake escalation 20.00.00.00.1-0.10.00.0
Intermitt. access day 1 inactive lever presses0.10.10.1-0.2-0.30.20.2
Intermitt. access day 15 inactive lever presses1.61.71.91.41.3-1.3-1.3
Intermitt. access escalation Index0.50.40.5-0.7-0.60.60.7
Intermittent access day 1 total infusions0.20.20.3-0.4-0.60.50.5
Intermittent access day 15 total infusions0.10.20.20.50.4-0.4-0.4
Intermittent access terminal intake (last 3 days)0.30.30.40.70.5-0.6-0.5
Intermittent access total infusions0.00.00.00.0-0.20.00.1
Intermittent access day 1 locomotion0.20.20.30.50.4-0.5-0.5
Intermittent access day 15 total locomotion6.06.36.62.62.4-2.6-2.5
Intermittent access total locomotion2.42.72.91.61.5-1.7-1.7
Intermittent access standard deviation1.01.01.21.11.0-1.0-1.0
Cocaine induced anxiety0.00.00.0-0.1-0.10.10.1
Post-drug Anxiety0.20.20.3-0.4-0.50.40.5
Baseline Anxiety0.40.40.5-0.6-0.60.70.6
Lifetime Intake0.10.10.10.40.2-0.3-0.3
Incentive Sensitization - Responses0.70.70.8-0.7-0.90.80.9
Incentive Sensitization - Breakpoint0.30.30.4-0.4-0.60.50.6
Progressive ratio test 1 active lever presses0.00.00.0-0.1-0.10.00.0
Progressive ratio test 1 breakpoint0.00.00.0-0.2-0.20.10.1
Progressive ratio test 1 inactive lever presses1.01.11.21.01.0-1.1-1.1
Progressive ratio test 2 active lever presses0.00.00.10.20.0-0.1-0.0
Progressive ratio test 2 breakpoint0.00.00.00.2-0.1-0.00.1
Progressive ratio test 2 inactive lever presses0.10.10.2-0.1-0.40.20.4
Total sessions with >9 infusions0.00.00.00.10.1-0.1-0.1
Short access day 1 total inactive lever presses0.10.10.1-0.2-0.20.20.3
Short access day 10 total inactive lever presses0.00.00.10.10.1-0.1-0.3
Short access day 1 total infusions0.91.01.1-1.0-1.01.01.0
Short access day 10 total infusions0.00.00.00.1-0.10.10.0
Short access total infusions0.00.00.00.10.0-0.1-0.1
Short access day 1 locomotion0.10.10.1-0.3-0.30.30.2
Short access day 10 total locomotion0.40.50.6-0.7-0.80.60.6
Short access total locomotion0.00.00.00.1-0.0-0.1-0.1
Compulsive drug intake3.33.23.4-1.8-1.81.71.8
One hour access (0.3 mA shock)0.70.90.9-0.9-1.00.91.0
One hour access (shock baseline)0.40.40.60.80.6-0.6-0.6
Number of responses in last shaping day1.01.01.2-0.9-1.11.01.0
Context. condit. distance diff. score0.40.50.6-0.8-0.60.70.6
Locomotion velocity, session 10.60.60.6-0.8-0.80.80.8
Locomotion distance, session 13.54.54.6-2.1-2.12.12.1
Locomotion velocity, session 20.20.30.3-0.5-0.50.50.5
Locomotion distance, session 20.91.21.3-1.1-1.11.11.1
Locomotion velocity, session 30.60.70.70.90.8-0.9-0.8
Locomotion distance, session 30.20.20.3-0.5-0.50.50.4
Stereotopy head waving bouts, day 32.02.42.61.51.5-1.5-1.6
Stereotopy head waving duration, day 30.10.10.10.30.3-0.3-0.3
Locomotion velocity, session 70.00.00.0-0.0-0.10.10.0
Locomotion distance, session 70.70.91.0-1.0-1.01.00.9
Stereotopy head waving bouts, day 70.50.60.70.80.8-0.8-0.7
Stereotopy head waving duration, day 71.41.71.91.31.3-1.4-1.3
Locomotion velocity, session 80.00.00.0-0.1-0.10.10.0
Locomotion distance, session 80.91.41.4-1.2-1.11.21.1
Degree of sensitization distance0.00.00.0-0.1-0.10.10.1
Degree of sensitization stereotypy0.00.00.00.10.1-0.2-0.1
Condit. Reinf. active minus inactive responses0.80.91.0-0.9-1.00.91.0
Condit. Reinf. active-inactive response ratio0.10.10.1-0.3-0.20.20.3
Condit. Reinf. active responses0.10.10.2-0.4-0.40.30.4
Condit. Reinf. inactive responses0.10.10.2-0.3-0.40.30.4
Incentive salience index mean0.30.30.4-0.5-0.60.50.6
Condit. Reinf. lever presses0.00.00.1-0.2-0.20.20.3
Time in familiar zone, hab. session 10.00.00.0-0.1-0.10.1-0.0
Time in novel zone, hab. session 10.30.30.30.50.6-0.6-0.5
Total zone transitions, hab. session 12.43.43.7-1.8-1.91.81.8
Total locomotion distance, hab. session 11.82.52.7-1.6-1.71.61.5
Locomotion velocity, hab. session 11.72.42.6-1.5-1.61.61.5
Time in familiar zone, hab. session 21.41.51.6-1.2-1.21.31.2
Time in novel zone, hab. session 21.61.61.71.31.3-1.3-1.3
Total zone transitions, hab. session 20.40.50.5-0.7-0.70.70.7
Total locomotion distance, hab. session 22.53.33.3-1.8-1.81.81.8
Locomotion velocity, hab. session 22.94.04.0-2.0-2.02.02.0
Novel to familiar place preference ratio0.30.30.30.50.5-0.5-0.6
Novelty place preference0.20.20.30.50.5-0.5-0.5
Time in novel zone, NPP test0.30.30.40.60.6-0.6-0.6
Total zone transitions, NPP test1.72.52.6-1.6-1.61.61.5
Total locomotion distance, NPP test1.42.02.1-1.4-1.41.51.3
Locomotion velocity, NPP test2.13.13.2-1.8-1.81.81.7
Pavlov. Cond. lever latency0.40.50.60.70.7-0.7-0.8
Pavlov. Cond. magazine entry latency0.60.80.9-0.9-0.80.90.8
Pavlov. Cond. change in total contacts0.50.60.60.70.8-0.8-0.8
Pavlov. Cond. index score0.20.30.4-0.6-0.50.60.5
Pavlov. Cond. latency score0.20.20.3-0.5-0.40.50.4
Pavlov. Cond. lever contacts0.30.40.4-0.6-0.60.60.6
Pavlov. Cond. magazine entry number1.11.41.51.21.1-1.2-1.1
Pavlov. Cond. intertrial magazine entries0.00.00.00.1-0.1-0.10.0
Pavlov. Cond. lever-magazine prob. diff.0.20.20.3-0.5-0.40.50.4
Pavlov. Cond. response bias1.11.31.4-1.2-1.11.21.1
Bone: apparent density0.50.80.9-0.8-0.90.91.0
Bone surface0.00.00.00.10.0-0.00.1
Bone volume0.00.00.10.20.2-0.1-0.1
Bone: connectivity density0.40.60.8-0.7-0.80.70.9
Bone: cortical apparent density0.00.00.00.20.10.00.1
Bone: cortical area0.20.30.40.40.6-0.4-0.7
Bone: cortical porosity0.00.00.00.0-0.0-0.0-0.0
Bone: cortical porosity0.00.00.0-0.1-0.10.0-0.0
Bone: cortical thickness0.10.20.3-0.5-0.40.50.2
Bone: cortical thickness0.00.00.10.10.1-0.0-0.3
Bone: cortical tissue density0.00.00.10.30.2-0.1-0.0
Bone: elastic displacement0.00.00.0-0.2-0.20.20.2
Bone: elastic work0.00.00.00.00.10.0-0.1
Bone: endosteal estimation3.37.27.52.62.7-2.7-2.7
Bone: endosteal perimeter1.73.53.71.91.9-1.9-1.8
Bone: final force4.16.77.22.62.7-2.5-2.6
Bone: final moment3.35.56.02.32.4-2.2-2.4
Bone: marrow area3.47.47.82.72.8-2.7-2.7
Bone: maximum diameter0.30.60.70.70.8-0.7-0.8
Bone: maximum force1.52.62.91.61.7-1.5-1.6
Bone: maximum moment1.01.82.11.31.4-1.2-1.4
Bone: minimum diameter1.01.92.21.31.5-1.3-1.5
Bone: periosteal estimation2.14.24.52.02.1-2.0-2.1
Bone: periosteal perimeter0.71.21.31.01.2-1.0-1.1
Bone: post-yield work0.20.30.30.50.5-0.5-0.5
Bone: stiffness1.32.02.11.31.5-1.4-1.4
Bone: tissue strength0.00.00.0-0.1-0.00.1-0.0
Bone: trabecular number1.01.51.7-1.2-1.21.21.3
Bone: trabecular spacing1.92.52.81.51.6-1.5-1.7
Bone: trabecular thickness0.40.50.50.70.7-0.6-0.7
Bone: trabecular tissue density0.10.10.10.30.3-0.3-0.2
Breakpoint value in progressive ratio session0.30.30.3-0.5-0.60.50.5
Distance traveled before self-admin0.90.91.01.00.9-1.0-1.0
Distance traveled after self-admin0.10.10.20.50.3-0.4-0.4
Delta time in closed arm before/after self-admin1.51.51.51.21.2-1.2-1.2
Delta time in open arm before/after self-admin0.80.80.8-0.9-0.80.90.9
Diff in mean of infusions in LGA sessions1.01.11.2-0.9-1.01.11.1
Extinction: sum of active levers before priming0.20.20.2-0.5-0.50.40.4
Active lever presses in extinction session 60.00.00.00.00.10.00.0
Delta distance traveled before/after self-admin0.50.50.6-0.6-0.80.70.7
Delta ambulatory time before/after self-admin0.60.60.8-0.7-0.90.80.8
Time in closed arm before self-admin0.40.50.5-0.6-0.70.70.7
Time in closed arm after self-admin0.00.00.10.30.2-0.1-0.1
Time in open arm before self-admin0.10.10.2-0.4-0.40.30.3
Time in open arm after self-admin1.61.82.0-1.4-1.41.31.3
Sum of active levers in priming session hrs 5-60.30.30.5-0.5-0.70.60.6
Time to tail flick, vehicle, before self-admin2.62.62.71.61.6-1.6-1.6
Time to tail flick, vehicle, after self-admin0.20.20.2-0.5-0.40.40.4
Time to tail flick, test, before self-admin0.10.10.1-0.2-0.30.30.3
Time to tail flick, test, after self-admin0.00.00.00.20.1-0.1-0.1
Delta time to tail flick, vehicle, before/after SA1.71.71.9-1.4-1.21.31.3
Delta time to tail flick, test, before/after SA1.61.41.61.11.2-1.2-1.3
Ambulatory time before self-admin0.40.40.50.70.6-0.7-0.7
Ambulatory time after self-admin0.00.10.1-0.1-0.30.20.2
Total heroin consumption0.30.30.5-0.4-0.70.60.6
Area under the delay curve0.70.81.10.51.0-0.9-1.0
Delay disc. indifference point, 0s delay0.00.00.10.00.3-0.1-0.1
Delay disc. indifference point, 16s delay0.20.20.30.30.5-0.4-0.5
Delay disc. indifference point, 2s delay0.20.20.5-0.7-0.40.30.3
Delay disc. indifference point, 24s delay2.52.42.71.41.6-1.6-1.7
Delay disc. indifference point, 4s delay1.01.01.30.71.1-1.1-1.1
Delay disc. indifference point, 8s delay1.71.82.31.01.4-1.4-1.5
Delay discount exponential model param0.60.60.9-0.4-0.90.81.0
Delay discount hyperbolic model param0.30.40.6-0.2-0.70.60.8
Fecal boli incidents, locomotor time 10.00.00.0-0.00.00.0-0.0
Change in fecal boli incidents, locomotor task0.10.10.10.10.2-0.3-0.3
Time >=10cm from walls, locomotor time 11.41.41.51.21.2-1.2-1.1
Bouts of movement, locomotor time 10.30.30.5-0.7-0.50.50.5
Total resting periods, locomotor time 10.00.10.2-0.4-0.20.10.1
Rest time, locomotor task time 10.10.10.10.20.3-0.3-0.3
Distance moved, locomotor task time 10.20.20.40.60.4-0.4-0.4
Vertical activity count, locomotor time 10.70.70.90.90.8-0.8-0.8
Time >=10cm from walls, locomotor time 25.66.06.12.42.5-2.5-2.4
Bouts of movement, locomotor time 20.10.10.10.10.4-0.3-0.3
Total resting periods, locomotor time 20.10.10.2-0.4-0.10.20.2
Rest time, locomotor task time 20.00.00.1-0.3-0.00.0-0.0
Distance moved, locomotor task time 22.63.13.82.01.7-1.7-1.6
Vertical activity count, locomotor time 21.61.72.71.71.3-1.2-1.1
Weight adjusted by age1.01.11.11.01.0-1.1-1.1
Seeking ratio, delayed vs. immediate footshock0.00.00.00.10.1-0.2-0.2
Locomotion in novel chamber0.70.81.2-1.1-0.80.90.8
Locomotion in novel chamber post-restriction1.72.02.41.31.6-1.4-1.4
Progressive ratio3.54.14.62.12.1-1.9-1.9
Food seeking constrained by brief footshock0.10.10.2-0.3-0.30.40.4
Seeking ratio, punishment vs. effort2.53.03.2-1.8-1.81.71.7
Run reversals in cocaine runway, females0.20.20.20.20.5-0.4-0.5
Run reversals in cocaine runway, males0.30.30.40.60.5-0.6-0.6
Latency to leave start box in cocaine runway0.70.70.8-0.8-0.80.90.9
Latency to leave start box in cocaine runway, F0.70.70.9-0.8-0.80.90.9
Latency to leave start box in cocaine runway, M0.00.00.0-0.1-0.10.10.0
Cd content in liver1.21.31.41.21.2-1.1-1.1
Co content in liver2.32.72.91.71.7-1.7-1.5
Cu content in liver3.54.24.7-2.0-2.12.02.2
Fe content in liver4.65.55.92.42.4-2.4-2.2
K content in liver1.31.31.8-1.0-1.11.11.3
Mg content in liver2.93.03.3-1.7-1.71.71.8
Mn content in liver0.10.10.3-0.3-0.30.30.5
Na content in liver0.00.00.10.0-0.20.00.3
Rb content in liver0.10.10.20.30.4-0.3-0.5
Se content in liver3.03.64.2-1.8-1.91.92.0
Sr content in liver0.00.00.0-0.2-0.20.20.1
Zn content in liver0.50.51.00.50.8-0.5-1.0