Far2

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 BLA gene expression ENSRNOG00000001851 0.06 0.04 1.7e-03 0.04 0.03 0.03 0.04 1.8e-03 6.1e-03 9.4e-03 3.2e-03
2 Brain mRNA stability ENSRNOG00000001851 0.1 0.06 8.9e-12 0.13 0.12 0.11 0.12 7.3e-12 2.0e-11 1.1e-10 8.1e-11
3 NAcc gene expression ENSRNOG00000001851 0.04 0.03 8.8e-04 0.03 0.04 0.03 0.04 1.3e-03 1.1e-03 1.3e-03 1.2e-03
4 PL gene expression ENSRNOG00000001851 0.04 0.03 8.7e-04 0.04 0.02 0.01 0.03 6.4e-04 5.8e-03 1.1e-01 4.1e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail2.47.78.7-2.42.9-2.7-2.9
BMI without tail2.85.97.3-1.72.7-2.4-2.7
Body weight0.31.21.7-0.81.3-0.8-1.3
Epididymis fat weight0.00.00.00.2-0.2-0.10.2
Glucose3.65.46.3-2.22.3-2.5-2.3
Heart weight0.91.32.2-0.41.5-0.9-1.4
Left kidney weight0.20.71.10.11.0-0.8-1.0
Right kidney weight0.10.30.40.20.6-0.5-0.6
Tail length0.20.61.61.3-0.50.60.5
Length with tail0.31.01.31.1-0.91.20.8
Length without tail0.30.60.90.7-0.81.00.7
Liver weight, left0.10.10.3-0.6-0.1-0.40.1
Liver weight, right0.20.41.1-1.10.3-0.4-0.4
Parametrial fat weight1.12.13.0-1.31.4-1.7-1.3
Retroperitoneal fat weight0.82.53.2-1.41.5-1.8-1.6
Intraocular pressure0.50.81.00.7-0.91.00.9
Extensor digitorum longus weight0.72.93.4-1.41.8-1.9-1.8
Soleus weight1.75.15.4-2.32.2-2.2-2.3
Tibialis anterior weight2.27.48.0-2.72.7-2.8-2.7
Tibia length3.28.99.63.1-3.02.92.9
Number of licking bursts0.91.11.40.5-1.21.11.2
Food consumed during 24 hour testing period3.03.74.5-1.82.1-1.6-2.1
Times rat made contact with spout0.10.10.10.10.4-0.2-0.4
Mean time between licks in bursts0.50.70.90.5-0.90.90.9
Mean num. licks in bursts0.91.11.5-0.31.2-1.1-1.2
Std. dev. time between licks in bursts1.92.22.91.4-1.41.71.4
Water consumed over 24 hours0.20.30.5-0.20.7-0.3-0.7
Indifference point 0 sec0.10.20.40.5-0.20.60.2
Indifference point AUC1.21.41.80.6-1.31.31.3
Indifference point function ln k0.10.20.50.7-0.20.30.1
Indifference point function log k0.10.20.50.7-0.20.30.1
Delay discounting total patch changes 0 sec0.10.20.40.4-0.30.60.2
Delay discounting total patch changes 12 sec0.30.30.80.1-0.60.90.5
Delay discounting total patch changes 18 sec0.20.30.60.1-0.50.80.5
Delay discounting total patch changes 24 sec1.01.21.51.1-1.11.21.0
Delay discounting total patch changes 6 sec0.60.91.50.8-0.81.20.8
Delay discounting time to switch 0 sec1.32.12.4-1.41.3-1.6-1.4
Delay discounting water rate 0 sec0.60.91.40.9-0.71.20.8
Delay discounting water rate 12 sec0.10.10.50.70.10.2-0.0
Delay discounting water rate 18 sec0.00.00.20.4-0.0-0.00.1
Delay discounting water rate 24 sec0.60.81.31.1-0.80.70.8
Delay discounting water rate 6 sec0.00.00.1-0.20.20.0-0.2
Locomotor activity0.50.82.2-1.50.6-0.3-0.6
Locomotor testing distance0.50.81.6-1.30.8-0.4-0.8
Locomotor testing rearing0.10.10.4-0.60.10.1-0.2
Light reinforcement 10.20.30.60.1-0.70.80.5
Light reinforcement 20.00.10.10.1-0.4-0.10.3
Reaction time number correct0.50.81.6-1.30.6-0.8-0.6
Reaction time mean minus median1.52.02.81.7-1.21.51.3
Reaction time mean minus median AUC0.70.91.10.9-0.91.00.9
Reaction time num false alarms0.30.40.5-0.70.6-0.3-0.7
Reaction time num false alarms AUC0.60.91.6-1.20.9-0.6-0.9
Reaction time trials correct on left0.50.81.6-1.30.6-0.8-0.6
Reaction time trials on left0.50.81.7-1.30.6-0.8-0.6
Reaction time mean0.60.91.21.1-0.81.00.8
Reaction time mean AUC0.40.50.80.9-0.60.70.6
Median of all reaction times0.60.81.01.0-0.80.90.9
Reaction time omissions0.20.30.40.2-0.60.70.6
Reaction time false alarm rate0.10.20.3-0.40.5-0.1-0.6
Reaction time premature initiation rate0.00.10.10.3-0.10.40.1
Reaction time premature initiations0.00.00.1-0.20.00.0-0.0
Std. dev. reaction times2.43.44.01.8-1.72.01.8
Reaction time trials completed0.50.81.7-1.30.6-0.8-0.6
Reaction time trials AUC0.60.91.7-1.30.7-0.9-0.6
Social response proportion1.11.11.7-1.10.9-1.3-1.0
Social responses1.72.14.1-2.01.2-1.2-1.2
Social time0.30.31.0-1.00.0-0.6-0.0
Conditioned locomotion0.20.20.5-0.70.3-0.4-0.3
Cocaine response after cond. corrected0.30.30.40.3-0.70.40.7
Cocaine response after cond. not corrected0.10.10.2-0.4-0.1-0.20.1
Cocaine response before conditioning3.13.74.2-1.91.9-2.0-1.9
Saline control response1.21.61.9-1.11.4-1.2-1.4
Condit. Reinf. active minus inactive responses0.60.71.2-0.41.1-0.5-1.1
Condit. Reinf. active-inactive response ratio0.10.10.30.50.00.6-0.0
Condit. Reinf. active responses1.21.72.2-1.11.5-1.0-1.5
Condit. Reinf. inactive responses2.12.72.9-1.71.6-1.6-1.6
Condit. Reinf. lever presses1.72.33.4-1.21.8-1.0-1.8
Condit. Reinf. lever reinforcers received1.72.43.0-1.31.7-1.3-1.7
Pavlov. Cond. lever latency1.31.72.50.9-1.61.11.6
Pavlov. Cond. magazine entry latency0.50.50.7-0.40.8-0.8-0.8
Pavlov. Cond. change in total contacts0.91.31.8-0.81.4-0.9-1.4
Pavlov. Cond. index score1.01.42.0-0.61.4-1.0-1.4
Pavlov. Cond. latency score1.31.62.4-0.71.6-1.1-1.6
Pavlov. Cond. lever contacts0.71.01.6-0.61.3-0.8-1.3
Pavlov. Cond. magazine entry number0.40.50.60.3-0.80.70.8
Pavlov. Cond. intertrial magazine entries0.70.81.0-1.00.9-0.8-0.9
Pavlov. Cond. lever-magazine prob. diff.0.70.91.4-0.41.2-0.8-1.2
Pavlov. Cond. response bias0.30.40.8-0.10.9-0.5-0.9
Conditioned reinforcement - actives1.01.01.2-1.11.1-0.5-1.1
Conditioned reinforcement - inactives0.70.81.0-1.00.9-0.7-0.9
Conditioned locomotion0.00.10.2-0.40.10.2-0.1
Intermittent access intake day 1-15 change0.10.10.20.50.10.3-0.1
Intermittent access intake escalation0.10.00.10.30.20.0-0.3
Intermittent access intake escalation 20.10.10.20.40.00.3-0.1
Intermitt. access day 1 inactive lever presses0.20.20.40.6-0.30.40.3
Intermitt. access day 15 inactive lever presses0.10.10.30.5-0.20.30.2
Intermitt. access escalation Index4.54.05.5-2.01.8-2.3-1.8
Intermittent access day 1 total infusions0.00.00.2-0.40.1-0.1-0.1
Intermittent access day 15 total infusions0.00.00.1-0.20.3-0.1-0.3
Intermittent access terminal intake (last 3 days)0.30.30.4-0.70.6-0.4-0.6
Intermittent access total infusions0.91.01.4-1.21.0-0.8-1.0
Intermittent access day 1 locomotion0.00.00.1-0.1-0.20.20.3
Intermittent access day 15 total locomotion0.70.70.9-0.90.9-0.7-0.9
Intermittent access total locomotion0.00.00.2-0.40.0-0.0-0.0
Intermittent access standard deviation0.60.70.9-0.70.9-0.6-1.0
Cocaine induced anxiety5.36.16.62.4-2.62.42.6
Post-drug Anxiety4.34.85.12.2-2.22.02.2
Baseline Anxiety0.50.50.7-0.50.8-0.8-0.8
Lifetime Intake0.91.01.3-1.11.0-0.8-1.0
Incentive Sensitization - Responses1.41.42.11.0-1.11.41.1
Incentive Sensitization - Breakpoint0.90.91.40.7-0.81.20.9
Progressive ratio test 1 active lever presses0.20.20.30.4-0.50.50.5
Progressive ratio test 1 breakpoint0.30.30.30.5-0.60.60.6
Progressive ratio test 1 inactive lever presses0.50.50.60.7-0.70.70.8
Progressive ratio test 2 active lever presses0.10.20.30.2-0.40.50.4
Progressive ratio test 2 breakpoint0.20.20.40.2-0.50.60.5
Progressive ratio test 2 inactive lever presses0.30.30.60.5-0.50.80.5
Total sessions with >9 infusions0.10.10.20.3-0.30.50.4
Short access day 1 total inactive lever presses0.00.00.00.1-0.2-0.10.2
Short access day 10 total inactive lever presses0.10.10.2-0.30.2-0.4-0.2
Short access day 1 total infusions1.21.31.5-1.21.1-1.2-1.1
Short access day 10 total infusions0.60.60.8-0.90.8-0.7-0.8
Short access total infusions0.30.30.5-0.70.6-0.5-0.5
Short access day 1 locomotion0.00.00.0-0.10.2-0.0-0.2
Short access day 10 total locomotion0.00.00.0-0.1-0.0-0.00.0
Short access total locomotion0.00.00.10.1-0.20.30.3
Compulsive drug intake2.22.23.1-1.41.4-1.7-1.4
One hour access (0.3 mA shock)0.81.01.1-0.91.0-0.9-1.1
One hour access (shock baseline)0.30.30.5-0.70.6-0.4-0.6
Number of responses in last shaping day2.72.83.21.5-1.71.71.8
Context. condit. distance diff. score0.00.00.1-0.10.3-0.1-0.3
Locomotion velocity, session 10.00.00.0-0.00.00.0-0.0
Locomotion distance, session 10.70.91.61.2-0.71.10.7
Locomotion velocity, session 20.50.50.90.9-0.50.90.5
Locomotion distance, session 20.40.61.10.9-0.61.00.6
Locomotion velocity, session 30.30.40.4-0.70.5-0.6-0.5
Locomotion distance, session 30.10.10.10.3-0.20.20.2
Stereotopy head waving bouts, day 30.10.20.4-0.60.4-0.2-0.4
Stereotopy head waving duration, day 30.00.00.10.0-0.20.30.2
Locomotion velocity, session 71.61.72.01.4-1.31.31.3
Locomotion distance, session 72.53.25.02.2-1.61.71.6
Stereotopy head waving bouts, day 71.82.12.61.1-1.61.41.6
Stereotopy head waving duration, day 70.81.01.40.5-1.21.01.2
Locomotion velocity, session 80.00.00.00.2-0.0-0.10.0
Locomotion distance, session 80.20.30.40.7-0.40.60.4
Degree of sensitization distance1.61.62.51.6-1.11.21.1
Degree of sensitization stereotypy2.93.13.71.4-1.91.71.9
Condit. Reinf. active minus inactive responses0.30.40.5-0.30.6-0.7-0.6
Condit. Reinf. active-inactive response ratio0.10.10.20.10.2-0.4-0.2
Condit. Reinf. active responses1.51.82.1-1.21.5-1.3-1.5
Condit. Reinf. inactive responses1.01.21.5-1.11.2-0.8-1.2
Incentive salience index mean0.40.40.5-0.50.7-0.7-0.7
Condit. Reinf. lever presses0.71.01.1-1.01.0-0.9-1.0
Time in familiar zone, hab. session 11.51.42.11.4-1.01.31.0
Time in novel zone, hab. session 12.52.53.1-1.81.4-1.7-1.4
Total zone transitions, hab. session 12.13.04.12.0-1.41.91.4
Total locomotion distance, hab. session 11.01.52.11.4-1.01.51.0
Locomotion velocity, hab. session 10.81.11.81.4-0.81.20.8
Time in familiar zone, hab. session 20.00.10.20.40.1-0.1-0.1
Time in novel zone, hab. session 20.10.10.2-0.40.3-0.0-0.3
Total zone transitions, hab. session 20.30.40.70.8-0.40.90.4
Total locomotion distance, hab. session 20.30.40.70.6-0.40.80.4
Locomotion velocity, hab. session 20.30.40.70.7-0.40.80.4
Novel to familiar place preference ratio0.30.40.50.2-0.70.70.7
Novelty place preference0.10.10.30.1-0.40.50.4
Time in novel zone, NPP test0.00.00.1-0.2-0.10.20.1
Total zone transitions, NPP test0.40.61.10.9-0.61.10.6
Total locomotion distance, NPP test0.60.91.50.9-0.81.20.8
Locomotion velocity, NPP test1.01.42.31.1-1.11.51.1
Pavlov. Cond. lever latency0.10.10.1-0.30.3-0.4-0.3
Pavlov. Cond. magazine entry latency0.50.70.80.7-0.90.90.9
Pavlov. Cond. change in total contacts0.50.50.70.8-0.60.80.6
Pavlov. Cond. index score0.10.10.20.3-0.30.40.3
Pavlov. Cond. latency score0.10.20.20.3-0.40.50.4
Pavlov. Cond. lever contacts0.00.00.0-0.20.0-0.1-0.0
Pavlov. Cond. magazine entry number0.10.10.10.3-0.30.20.3
Pavlov. Cond. intertrial magazine entries1.72.03.3-1.81.3-1.1-1.3
Pavlov. Cond. lever-magazine prob. diff.0.00.10.10.3-0.20.30.2
Pavlov. Cond. response bias0.20.20.2-0.40.5-0.4-0.5
Bone: apparent density0.71.11.9-0.51.1-1.4-1.1
Bone surface0.71.22.1-0.91.0-1.4-1.0
Bone volume1.32.13.3-1.11.4-1.8-1.4
Bone: connectivity density1.01.52.8-0.91.1-1.7-1.1
Bone: cortical apparent density1.41.82.11.4-1.31.21.3
Bone: cortical area2.84.34.9-1.92.2-1.9-2.2
Bone: cortical porosity1.31.41.6-1.31.2-1.1-1.2
Bone: cortical porosity1.92.02.3-1.51.4-1.3-1.4
Bone: cortical thickness1.72.83.5-1.41.9-1.5-1.9
Bone: cortical thickness0.30.40.5-0.60.7-0.4-0.7
Bone: cortical tissue density1.51.92.21.5-1.41.21.4
Bone: elastic displacement0.00.10.2-0.10.0-0.4-0.0
Bone: elastic work0.70.91.6-0.60.9-1.3-0.9
Bone: endosteal estimation0.10.10.3-0.50.2-0.3-0.2
Bone: endosteal perimeter0.00.00.0-0.20.1-0.0-0.1
Bone: final force0.81.21.9-0.71.4-0.8-1.4
Bone: final moment0.71.21.8-0.71.4-0.8-1.4
Bone: marrow area0.10.20.4-0.60.3-0.4-0.3
Bone: maximum diameter5.49.810.3-3.03.2-3.1-3.2
Bone: maximum force0.40.71.0-0.51.0-0.7-1.0
Bone: maximum moment0.40.71.0-0.61.0-0.7-1.0
Bone: minimum diameter0.40.70.9-0.60.9-0.8-0.9
Bone: periosteal estimation0.91.82.0-1.41.3-1.3-1.3
Bone: periosteal perimeter0.20.40.5-0.60.7-0.5-0.7
Bone: post-yield work0.20.30.5-0.50.5-0.7-0.5
Bone: stiffness0.30.50.7-0.40.9-0.4-0.9
Bone: tissue strength0.20.20.4-0.00.6-0.4-0.6
Bone: trabecular number0.40.71.0-0.60.8-1.0-0.8
Bone: trabecular spacing0.20.20.30.1-0.50.50.5
Bone: trabecular thickness2.73.24.9-1.31.8-2.2-1.8
Bone: trabecular tissue density0.20.20.4-0.0-0.50.60.5
Breakpoint value in progressive ratio session0.91.01.2-0.91.0-1.1-1.0
Distance traveled before self-admin0.10.10.2-0.30.3-0.4-0.3
Distance traveled after self-admin0.50.50.70.8-0.80.30.8
Delta time in closed arm before/after self-admin0.30.30.6-0.30.5-0.8-0.5
Delta time in open arm before/after self-admin4.94.74.82.2-2.22.12.2
Diff in mean of infusions in LGA sessions0.10.10.20.2-0.20.40.2
Extinction: sum of active levers before priming0.00.00.10.2-0.00.4-0.1
Active lever presses in extinction session 60.30.30.4-0.60.5-0.5-0.6
Delta distance traveled before/after self-admin0.00.00.10.2-0.3-0.10.3
Delta ambulatory time before/after self-admin0.10.20.30.3-0.5-0.00.5
Time in closed arm before self-admin2.12.42.71.4-1.61.61.6
Time in closed arm after self-admin0.00.00.00.2-0.20.00.1
Time in open arm before self-admin1.51.61.8-1.31.2-1.3-1.2
Time in open arm after self-admin0.50.60.70.6-0.80.70.8
Sum of active levers in priming session hrs 5-62.02.02.3-1.21.5-1.4-1.5
Time to tail flick, vehicle, before self-admin2.72.83.4-1.61.8-1.3-1.8
Time to tail flick, vehicle, after self-admin0.40.40.90.3-0.51.00.5
Time to tail flick, test, before self-admin1.11.11.51.2-1.20.51.2
Time to tail flick, test, after self-admin0.90.91.00.9-1.00.81.0
Delta time to tail flick, vehicle, before/after SA3.53.43.81.6-1.82.01.9
Delta time to tail flick, test, before/after SA1.21.11.6-1.31.1-0.6-1.0
Ambulatory time before self-admin0.40.40.4-0.50.6-0.6-0.7
Ambulatory time after self-admin0.30.30.50.4-0.70.20.7
Total heroin consumption0.60.80.9-0.90.8-0.9-0.9
Area under the delay curve1.51.61.71.3-1.31.11.3
Delay disc. indifference point, 0s delay1.51.61.81.2-1.21.41.2
Delay disc. indifference point, 16s delay1.51.51.81.3-1.21.21.2
Delay disc. indifference point, 2s delay0.00.00.0-0.00.0-0.2-0.0
Delay disc. indifference point, 24s delay4.34.25.02.2-2.02.01.9
Delay disc. indifference point, 4s delay0.20.30.30.6-0.60.20.5
Delay disc. indifference point, 8s delay0.30.30.50.5-0.70.40.7
Delay discount exponential model param1.41.51.7-1.31.3-1.0-1.3
Delay discount hyperbolic model param1.01.01.2-1.11.1-0.8-1.1
Fecal boli incidents, locomotor time 10.20.20.20.5-0.50.50.4
Change in fecal boli incidents, locomotor task0.40.40.5-0.50.7-0.6-0.7
Time >=10cm from walls, locomotor time 10.10.10.3-0.5-0.1-0.20.1
Bouts of movement, locomotor time 10.10.20.40.70.0-0.5-0.1
Total resting periods, locomotor time 10.20.20.50.7-0.1-0.50.1
Rest time, locomotor task time 10.70.81.5-0.50.8-1.2-0.9
Distance moved, locomotor task time 11.92.03.31.1-1.31.81.3
Vertical activity count, locomotor time 13.33.54.71.5-1.92.21.9
Time >=10cm from walls, locomotor time 21.01.01.40.8-1.20.91.2
Bouts of movement, locomotor time 25.35.77.52.7-2.32.12.3
Total resting periods, locomotor time 23.63.95.42.3-1.91.61.9
Rest time, locomotor task time 20.00.00.10.3-0.1-0.10.1
Distance moved, locomotor task time 20.20.30.40.3-0.50.70.5
Vertical activity count, locomotor time 21.11.21.40.8-1.21.21.2
Weight adjusted by age3.64.15.0-1.72.1-2.2-2.1
Seeking ratio, delayed vs. immediate footshock0.00.00.10.3-0.10.10.1
Locomotion in novel chamber0.10.10.2-0.30.10.5-0.1
Locomotion in novel chamber post-restriction0.30.30.4-0.50.5-0.6-0.5
Progressive ratio0.40.40.8-0.90.6-0.5-0.6
Food seeking constrained by brief footshock2.22.73.4-1.31.7-1.8-1.7
Seeking ratio, punishment vs. effort0.10.10.20.20.3-0.5-0.3
Run reversals in cocaine runway, females0.60.60.70.8-0.80.70.8
Run reversals in cocaine runway, males0.20.20.3-0.50.4-0.6-0.3
Latency to leave start box in cocaine runway0.60.70.9-1.00.8-0.7-0.8
Latency to leave start box in cocaine runway, F0.20.30.3-0.40.6-0.5-0.5
Latency to leave start box in cocaine runway, M0.20.20.5-0.70.4-0.2-0.4
Cd content in liver1.01.02.4-1.50.6-1.1-0.6
Co content in liver4.45.25.82.1-2.42.22.4
Cu content in liver0.00.00.1-0.0-0.00.30.0
Fe content in liver0.00.00.1-0.3-0.0-0.30.0
K content in liver3.83.84.91.1-2.22.12.2
Mg content in liver6.46.68.41.6-2.92.72.9
Mn content in liver1.71.92.91.2-1.31.71.3
Na content in liver2.42.53.40.7-1.71.81.7
Rb content in liver0.00.10.2-0.4-0.20.10.2
Se content in liver2.83.43.91.7-2.01.72.0
Sr content in liver0.10.10.2-0.00.5-0.3-0.5
Zn content in liver0.10.20.6-0.80.0-0.2-0.0