Map2k7

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000001047 0.03 0.02 6.5e-03 0.01 0.01 0.01 0 3.7e-02 3.7e-02 2.5e-02 9.2e-02
2 Brain alternative polyA ENSRNOT00000061821 0.03 0.02 1.4e-03 0.01 0.01 -0 0.01 3.8e-02 1.5e-02 5.8e-01 6.5e-02
3 Brain alternative polyA ENSRNOT00000104881 0.03 0.02 1.4e-03 0.01 0.02 0 0.01 2.4e-02 7.1e-03 3.2e-01 3.0e-02
4 PL gene expression ENSRNOG00000001047 0.03 0.02 5.9e-03 0.02 0.02 0.02 0.02 9.2e-03 6.5e-03 8.3e-03 1.4e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail1.34.29.3-3.01.6-1.5-1.7
BMI without tail0.81.65.9-2.40.1-0.1-0.7
Body weight2.711.642.7-6.50.10.1-1.9
Epididymis fat weight1.94.44.9-2.02.1-2.1-2.2
Glucose0.10.20.50.70.1-0.10.5
Heart weight0.71.01.60.8-1.31.30.5
Left kidney weight1.54.413.0-3.6-1.41.5-0.5
Right kidney weight1.23.49.8-3.1-1.31.4-0.2
Tail length1.44.113.9-3.7-0.91.0-0.8
Length with tail2.59.232.0-5.7-1.21.4-1.2
Length without tail2.34.917.1-4.10.4-0.3-1.6
Liver weight, left0.30.40.8-0.3-0.80.90.5
Liver weight, right1.01.75.5-2.40.1-0.1-1.1
Parametrial fat weight0.91.72.41.1-1.31.31.6
Retroperitoneal fat weight2.16.910.8-1.33.2-3.3-2.2
Intraocular pressure1.31.84.2-2.00.7-0.7-1.4
Extensor digitorum longus weight2.08.123.1-4.81.1-1.0-2.7
Soleus weight1.13.37.7-2.81.0-1.0-1.8
Tibialis anterior weight2.58.524.7-5.01.2-1.0-2.6
Tibia length1.33.76.0-0.5-2.42.51.7
Number of licking bursts7.69.011.02.3-3.33.33.0
Food consumed during 24 hour testing period0.81.01.40.6-1.21.20.9
Times rat made contact with spout0.60.71.3-0.0-1.11.10.5
Mean time between licks in bursts0.20.20.70.80.3-0.30.1
Mean num. licks in bursts2.63.13.4-1.71.8-1.8-1.8
Std. dev. time between licks in bursts0.40.50.9-0.90.4-0.4-0.9
Water consumed over 24 hours1.92.23.90.0-1.92.01.1
Indifference point 0 sec0.00.00.0-0.2-0.10.1-0.1
Indifference point AUC0.10.20.3-0.3-0.50.50.1
Indifference point function ln k0.20.20.40.1-0.60.70.2
Indifference point function log k0.20.20.40.1-0.60.70.2
Delay discounting total patch changes 0 sec0.00.00.0-0.1-0.10.1-0.1
Delay discounting total patch changes 12 sec0.10.10.3-0.50.2-0.2-0.3
Delay discounting total patch changes 18 sec0.20.30.40.4-0.70.70.5
Delay discounting total patch changes 24 sec0.20.30.7-0.50.4-0.4-0.8
Delay discounting total patch changes 6 sec0.10.10.3-0.60.0-0.0-0.4
Delay discounting time to switch 0 sec0.50.81.21.10.9-1.00.5
Delay discounting water rate 0 sec0.71.22.1-1.4-1.01.1-0.4
Delay discounting water rate 12 sec0.20.30.5-0.7-0.10.2-0.7
Delay discounting water rate 18 sec0.30.41.0-0.50.4-0.4-1.0
Delay discounting water rate 24 sec0.50.71.7-1.3-0.60.6-0.6
Delay discounting water rate 6 sec1.11.63.0-1.70.8-0.7-1.5
Locomotor activity0.50.92.6-1.6-0.40.4-0.7
Locomotor testing distance0.30.40.7-0.8-0.70.7-0.0
Locomotor testing rearing0.00.00.1-0.3-0.00.1-0.2
Light reinforcement 10.30.50.90.40.9-0.9-0.5
Light reinforcement 20.70.91.51.2-0.80.81.0
Reaction time number correct0.30.40.7-0.2-0.80.80.2
Reaction time mean minus median3.85.06.1-2.32.1-2.1-2.5
Reaction time mean minus median AUC1.41.72.6-1.01.3-1.3-1.6
Reaction time num false alarms0.81.11.7-0.81.0-1.0-1.3
Reaction time num false alarms AUC1.62.23.1-1.31.4-1.4-1.7
Reaction time trials correct on left0.30.40.7-0.2-0.80.80.2
Reaction time trials on left0.20.30.7-0.2-0.80.80.2
Reaction time mean0.50.71.20.71.1-1.1-0.3
Reaction time mean AUC0.70.91.60.61.2-1.3-0.5
Median of all reaction times0.70.92.61.60.7-0.80.4
Reaction time omissions0.70.91.3-0.21.1-1.1-1.0
Reaction time false alarm rate1.82.63.2-1.21.7-1.7-1.8
Reaction time premature initiation rate0.10.10.1-0.20.3-0.3-0.4
Reaction time premature initiations0.00.00.1-0.3-0.00.0-0.2
Std. dev. reaction times1.62.22.7-1.01.6-1.7-1.5
Reaction time trials completed0.20.30.7-0.2-0.80.80.2
Reaction time trials AUC0.10.20.3-0.3-0.60.60.0
Social response proportion0.50.60.9-0.8-0.90.90.2
Social responses0.81.02.9-1.70.1-0.1-1.0
Social time0.50.72.61.6-0.0-0.00.5
Conditioned locomotion0.80.90.9-0.91.0-1.0-1.0
Cocaine response after cond. corrected0.10.10.30.30.1-0.10.5
Cocaine response after cond. not corrected0.91.01.5-0.81.2-1.2-0.7
Cocaine response before conditioning4.75.87.1-2.42.3-2.2-2.7
Saline control response1.21.63.0-0.2-1.71.70.6
Condit. Reinf. active minus inactive responses0.10.20.5-0.7-0.20.2-0.3
Condit. Reinf. active-inactive response ratio0.10.10.20.1-0.50.50.2
Condit. Reinf. active responses1.01.42.7-1.60.8-0.7-1.3
Condit. Reinf. inactive responses1.21.62.3-1.51.0-1.0-1.4
Condit. Reinf. lever presses2.12.93.7-1.91.5-1.5-1.9
Condit. Reinf. lever reinforcers received0.81.11.9-1.40.7-0.7-1.2
Pavlov. Cond. lever latency1.31.82.21.1-1.41.41.5
Pavlov. Cond. magazine entry latency1.51.72.7-0.41.6-1.6-1.2
Pavlov. Cond. change in total contacts0.40.60.8-0.60.7-0.7-0.9
Pavlov. Cond. index score1.41.82.3-0.71.5-1.5-1.4
Pavlov. Cond. latency score1.51.92.5-0.71.6-1.6-1.4
Pavlov. Cond. lever contacts2.53.54.0-1.52.0-2.0-2.0
Pavlov. Cond. magazine entry number0.81.01.60.0-1.21.20.9
Pavlov. Cond. intertrial magazine entries0.40.50.9-0.0-0.91.00.4
Pavlov. Cond. lever-magazine prob. diff.1.11.52.0-0.51.4-1.4-1.3
Pavlov. Cond. response bias3.24.35.2-1.42.3-2.3-2.2
Conditioned reinforcement - actives1.21.11.8-1.0-1.31.30.4
Conditioned reinforcement - inactives1.01.11.60.6-1.31.31.0
Conditioned locomotion0.80.93.0-1.7-0.10.2-0.8
Intermittent access intake day 1-15 change1.21.22.0-0.0-1.41.40.9
Intermittent access intake escalation0.60.61.0-0.5-1.01.00.4
Intermittent access intake escalation 20.10.10.20.0-0.50.50.2
Intermitt. access day 1 inactive lever presses1.11.21.80.7-1.31.30.9
Intermitt. access day 15 inactive lever presses0.30.30.70.6-0.40.30.8
Intermitt. access escalation Index0.50.40.8-0.40.6-0.6-0.9
Intermittent access day 1 total infusions0.40.50.70.00.8-0.9-0.7
Intermittent access day 15 total infusions0.10.10.2-0.50.00.0-0.3
Intermittent access terminal intake (last 3 days)0.00.00.00.10.1-0.1-0.1
Intermittent access total infusions0.40.40.6-0.20.8-0.8-0.6
Intermittent access day 1 locomotion2.93.04.1-0.72.0-2.0-1.8
Intermittent access day 15 total locomotion1.51.62.8-1.21.1-1.0-1.7
Intermittent access total locomotion1.82.12.9-0.71.6-1.6-1.7
Intermittent access standard deviation0.50.60.80.2-0.80.80.9
Cocaine induced anxiety3.03.44.0-1.32.0-2.0-2.0
Post-drug Anxiety1.82.03.60.41.8-1.9-1.0
Baseline Anxiety1.01.13.31.80.2-0.30.9
Lifetime Intake0.20.20.40.10.6-0.6-0.2
Incentive Sensitization - Responses0.10.10.2-0.10.1-0.1-0.4
Incentive Sensitization - Breakpoint0.10.10.3-0.20.2-0.2-0.5
Progressive ratio test 1 active lever presses0.30.30.50.1-0.70.70.5
Progressive ratio test 1 breakpoint0.50.50.80.2-0.90.90.7
Progressive ratio test 1 inactive lever presses1.01.01.80.3-1.31.40.7
Progressive ratio test 2 active lever presses0.20.20.4-0.6-0.50.5-0.1
Progressive ratio test 2 breakpoint0.20.20.4-0.2-0.60.60.1
Progressive ratio test 2 inactive lever presses0.81.01.5-1.0-1.21.2-0.0
Total sessions with >9 infusions0.10.10.2-0.40.3-0.3-0.2
Short access day 1 total inactive lever presses0.80.91.20.7-1.11.10.9
Short access day 10 total inactive lever presses0.70.71.2-0.5-1.11.10.6
Short access day 1 total infusions0.40.41.11.00.2-0.20.7
Short access day 10 total infusions0.40.50.80.20.9-0.9-0.4
Short access total infusions0.30.30.70.80.1-0.20.7
Short access day 1 locomotion0.30.30.40.50.6-0.6-0.3
Short access day 10 total locomotion0.30.30.5-0.00.7-0.7-0.6
Short access total locomotion0.70.71.30.21.1-1.1-0.6
Compulsive drug intake1.21.24.12.0-0.30.20.8
One hour access (0.3 mA shock)0.60.71.30.6-1.11.10.4
One hour access (shock baseline)0.50.61.7-1.3-0.10.1-0.8
Number of responses in last shaping day0.10.10.20.1-0.40.40.3
Context. condit. distance diff. score4.85.911.1-3.31.8-1.7-2.5
Locomotion velocity, session 10.10.10.2-0.10.5-0.5-0.3
Locomotion distance, session 10.10.20.50.70.2-0.20.1
Locomotion velocity, session 20.50.60.70.8-0.70.70.8
Locomotion distance, session 20.40.51.31.1-0.50.50.5
Locomotion velocity, session 31.21.42.1-1.41.0-1.0-1.2
Locomotion distance, session 30.10.10.1-0.30.2-0.2-0.4
Stereotopy head waving bouts, day 30.40.51.6-1.3-0.40.4-0.2
Stereotopy head waving duration, day 30.00.00.1-0.0-0.10.10.2
Locomotion velocity, session 70.10.10.20.40.2-0.20.1
Locomotion distance, session 70.10.10.2-0.10.4-0.4-0.4
Stereotopy head waving bouts, day 70.10.20.3-0.00.5-0.5-0.4
Stereotopy head waving duration, day 70.10.10.20.50.1-0.10.2
Locomotion velocity, session 80.00.00.0-0.2-0.10.10.1
Locomotion distance, session 80.81.12.5-1.60.7-0.6-1.1
Degree of sensitization distance0.40.41.21.1-0.30.30.6
Degree of sensitization stereotypy0.20.20.3-0.10.6-0.6-0.4
Condit. Reinf. active minus inactive responses0.50.60.9-0.01.0-1.0-0.6
Condit. Reinf. active-inactive response ratio0.70.81.2-0.51.1-1.1-0.8
Condit. Reinf. active responses0.60.81.0-0.31.0-1.0-0.9
Condit. Reinf. inactive responses0.20.30.4-0.00.5-0.5-0.7
Incentive salience index mean1.11.31.8-0.51.3-1.3-1.2
Condit. Reinf. lever presses1.52.02.5-0.91.5-1.5-1.6
Time in familiar zone, hab. session 10.30.30.50.7-0.40.40.7
Time in novel zone, hab. session 10.10.10.3-0.50.1-0.1-0.3
Total zone transitions, hab. session 10.30.40.60.50.7-0.8-0.5
Total locomotion distance, hab. session 11.31.92.9-0.51.7-1.7-1.3
Locomotion velocity, hab. session 11.31.93.0-0.11.7-1.7-1.2
Time in familiar zone, hab. session 20.10.10.1-0.10.4-0.4-0.1
Time in novel zone, hab. session 20.00.00.00.20.0-0.0-0.1
Total zone transitions, hab. session 20.81.01.30.7-1.11.11.0
Total locomotion distance, hab. session 20.00.10.20.4-0.10.10.2
Locomotion velocity, hab. session 20.10.20.40.6-0.30.30.4
Novel to familiar place preference ratio0.90.91.00.9-1.01.01.0
Novelty place preference0.90.91.11.0-0.90.91.0
Time in novel zone, NPP test0.70.70.80.8-0.80.80.9
Total zone transitions, NPP test0.00.00.0-0.2-0.00.0-0.2
Total locomotion distance, NPP test1.72.42.7-1.31.6-1.6-1.6
Locomotion velocity, NPP test1.31.82.4-1.21.3-1.3-1.5
Pavlov. Cond. lever latency0.70.91.6-0.5-1.21.30.7
Pavlov. Cond. magazine entry latency0.10.10.3-0.60.0-0.0-0.3
Pavlov. Cond. change in total contacts0.70.81.3-0.21.1-1.1-0.7
Pavlov. Cond. index score0.60.81.0-0.61.0-1.0-1.0
Pavlov. Cond. latency score0.70.91.2-0.51.1-1.1-1.0
Pavlov. Cond. lever contacts0.81.01.60.21.2-1.3-0.8
Pavlov. Cond. magazine entry number0.81.01.71.3-0.70.61.1
Pavlov. Cond. intertrial magazine entries0.30.41.11.0-0.30.30.4
Pavlov. Cond. lever-magazine prob. diff.0.60.70.9-0.60.9-0.9-0.9
Pavlov. Cond. response bias0.81.01.3-1.00.9-0.9-1.1
Bone: apparent density2.13.410.0-3.20.8-0.7-1.6
Bone surface2.13.711.0-3.30.9-0.8-1.6
Bone volume2.64.39.9-3.21.4-1.3-1.9
Bone: connectivity density1.92.910.0-3.20.3-0.2-1.3
Bone: cortical apparent density0.10.10.20.40.4-0.40.1
Bone: cortical area1.62.55.6-2.41.0-1.0-1.4
Bone: cortical porosity0.10.10.1-0.0-0.30.30.2
Bone: cortical porosity0.00.00.1-0.10.1-0.1-0.3
Bone: cortical thickness0.91.43.6-1.90.7-0.7-1.0
Bone: cortical thickness0.20.20.6-0.8-0.30.4-0.2
Bone: cortical tissue density0.10.10.20.50.3-0.40.2
Bone: elastic displacement0.20.20.3-0.4-0.50.50.1
Bone: elastic work0.91.24.0-2.0-0.30.3-0.7
Bone: endosteal estimation0.30.60.9-0.7-0.90.90.2
Bone: endosteal perimeter0.81.74.2-2.00.6-0.5-1.4
Bone: final force0.40.71.4-1.2-0.80.80.2
Bone: final moment0.40.70.9-0.9-0.90.90.3
Bone: marrow area0.30.61.0-0.7-1.01.00.2
Bone: maximum diameter0.71.23.8-2.00.4-0.3-0.9
Bone: maximum force0.50.93.0-1.7-0.30.3-0.5
Bone: maximum moment0.40.62.1-1.4-0.40.5-0.3
Bone: minimum diameter0.00.10.10.1-0.30.30.3
Bone: periosteal estimation0.50.93.3-1.8-0.10.2-0.6
Bone: periosteal perimeter2.33.86.6-2.61.5-1.4-2.1
Bone: post-yield work1.11.51.9-1.41.1-1.0-1.3
Bone: stiffness0.30.51.5-1.20.2-0.2-0.7
Bone: tissue strength0.60.60.70.6-0.80.80.9
Bone: trabecular number1.42.27.3-2.70.5-0.4-1.1
Bone: trabecular spacing0.81.03.61.90.1-0.10.5
Bone: trabecular thickness4.04.811.5-3.41.3-1.3-2.1
Bone: trabecular tissue density1.31.82.0-1.21.4-1.4-1.4
Breakpoint value in progressive ratio session2.52.83.1-1.81.6-1.6-1.8
Distance traveled before self-admin0.30.40.60.10.8-0.8-0.6
Distance traveled after self-admin0.10.10.2-0.30.3-0.3-0.4
Delta time in closed arm before/after self-admin0.00.00.0-0.2-0.20.2-0.2
Delta time in open arm before/after self-admin0.90.81.40.61.1-1.2-0.4
Diff in mean of infusions in LGA sessions1.11.21.6-1.21.0-0.9-1.3
Extinction: sum of active levers before priming1.11.11.8-0.11.3-1.3-0.9
Active lever presses in extinction session 60.50.50.8-0.90.6-0.6-0.7
Delta distance traveled before/after self-admin0.40.50.70.2-0.80.80.6
Delta ambulatory time before/after self-admin0.10.10.20.3-0.40.40.3
Time in closed arm before self-admin0.70.81.3-0.2-1.11.20.7
Time in closed arm after self-admin0.40.50.9-0.3-0.91.00.0
Time in open arm before self-admin0.00.00.0-0.2-0.20.2-0.0
Time in open arm after self-admin0.20.30.5-0.20.7-0.7-0.3
Sum of active levers in priming session hrs 5-61.71.72.8-0.71.6-1.7-0.9
Time to tail flick, vehicle, before self-admin0.30.30.70.80.4-0.40.3
Time to tail flick, vehicle, after self-admin0.10.10.10.30.3-0.3-0.2
Time to tail flick, test, before self-admin0.30.30.4-0.2-0.60.70.4
Time to tail flick, test, after self-admin0.20.20.3-0.10.5-0.6-0.0
Delta time to tail flick, vehicle, before/after SA0.10.10.10.00.3-0.3-0.3
Delta time to tail flick, test, before/after SA0.70.71.1-0.31.0-1.0-0.6
Ambulatory time before self-admin2.12.22.7-1.01.6-1.6-1.6
Ambulatory time after self-admin0.91.01.1-0.91.0-1.0-1.1
Total heroin consumption3.03.65.5-0.42.3-2.3-1.9
Area under the delay curve0.80.81.4-0.11.2-1.2-0.7
Delay disc. indifference point, 0s delay0.10.10.2-0.10.5-0.50.1
Delay disc. indifference point, 16s delay0.10.10.20.30.4-0.4-0.1
Delay disc. indifference point, 2s delay3.33.75.8-0.72.4-2.4-1.7
Delay disc. indifference point, 24s delay0.30.30.80.9-0.10.10.4
Delay disc. indifference point, 4s delay1.92.03.1-0.51.7-1.8-1.2
Delay disc. indifference point, 8s delay0.40.40.6-0.10.8-0.8-0.6
Delay discount exponential model param1.11.21.90.2-1.41.41.0
Delay discount hyperbolic model param1.11.22.00.2-1.41.40.9
Fecal boli incidents, locomotor time 10.50.51.6-1.3-0.10.1-0.7
Change in fecal boli incidents, locomotor task0.70.71.31.1-0.50.41.1
Time >=10cm from walls, locomotor time 11.71.82.7-0.51.6-1.7-1.2
Bouts of movement, locomotor time 10.30.30.8-0.9-0.50.6-0.1
Total resting periods, locomotor time 10.30.30.9-0.9-0.40.4-0.2
Rest time, locomotor task time 10.50.61.7-1.30.2-0.2-0.6
Distance moved, locomotor task time 10.20.20.80.9-0.10.10.3
Vertical activity count, locomotor time 10.10.10.20.4-0.40.40.2
Time >=10cm from walls, locomotor time 22.52.63.7-1.91.5-1.5-1.5
Bouts of movement, locomotor time 21.21.33.2-1.80.6-0.5-1.2
Total resting periods, locomotor time 21.01.02.9-1.70.4-0.4-1.0
Rest time, locomotor task time 20.50.60.7-0.70.8-0.8-0.8
Distance moved, locomotor task time 22.12.42.61.4-1.61.61.6
Vertical activity count, locomotor time 21.92.13.40.4-1.81.81.2
Weight adjusted by age0.30.40.6-0.4-0.70.80.4
Seeking ratio, delayed vs. immediate footshock3.23.77.82.8-1.31.31.9
Locomotion in novel chamber0.40.51.00.2-1.01.00.3
Locomotion in novel chamber post-restriction0.50.61.5-1.2-0.50.5-0.6
Progressive ratio0.70.81.71.3-0.60.61.0
Food seeking constrained by brief footshock0.30.41.01.0-0.30.30.5
Seeking ratio, punishment vs. effort0.20.30.7-0.90.3-0.2-0.5
Run reversals in cocaine runway, females0.20.20.30.00.5-0.5-0.3
Run reversals in cocaine runway, males0.70.71.00.7-1.01.00.6
Latency to leave start box in cocaine runway0.20.30.50.6-0.40.30.7
Latency to leave start box in cocaine runway, F0.80.91.60.7-0.90.91.3
Latency to leave start box in cocaine runway, M0.60.50.9-0.30.8-0.8-1.0
Cd content in liver0.91.02.51.6-0.80.80.6
Co content in liver1.51.82.50.9-1.61.61.2
Cu content in liver0.30.30.6-0.40.5-0.5-0.8
Fe content in liver5.16.19.4-3.12.0-1.9-2.7
K content in liver0.50.50.6-0.50.8-0.8-0.7
Mg content in liver0.00.00.1-0.1-0.20.20.1
Mn content in liver1.41.62.41.5-1.11.01.4
Na content in liver0.30.40.6-0.80.5-0.5-0.6
Rb content in liver1.31.72.80.11.6-1.7-1.1
Se content in liver6.57.98.1-2.82.8-2.8-2.8
Sr content in liver2.22.12.50.9-1.51.51.6
Zn content in liver0.50.60.9-0.6-0.90.90.4