Slc46a3

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000000937 0.63 0.14 0.0e+00 0.34 0.35 0.35 0.35 1.6e-39 2.9e-40 8.3e-41 3.3e-40
2 Adipose mRNA stability ENSRNOG00000000937 0.26 0.12 2.7e-14 0.11 0.1 0.1 0.11 3.7e-12 8.9e-11 3.4e-11 6.7e-12
3 Brain mRNA stability ENSRNOG00000000937 0.16 0.1 2.3e-03 0.03 0.02 0.02 0.03 3.8e-04 9.7e-03 2.3e-03 1.1e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail0.72.34.4-2.1-1.50.4
BMI without tail0.20.51.00.51.00.3
Body weight0.62.64.42.11.8-0.5
Epididymis fat weight0.30.82.0-1.4-0.40.4
Glucose0.50.81.80.8-0.1-1.3
Heart weight0.91.32.31.51.0-0.9
Left kidney weight0.41.32.71.60.6-0.9
Right kidney weight0.51.42.21.11.50.9
Tail length4.112.421.94.73.8-0.8
Length with tail4.917.833.45.84.1-1.8
Length without tail0.81.83.41.81.3-0.4
Liver weight, left1.01.64.1-0.80.52.0
Liver weight, right1.52.64.00.82.01.7
Parametrial fat weight0.00.00.00.2-0.0-0.0
Retroperitoneal fat weight0.20.71.6-0.50.41.3
Intraocular pressure1.92.74.1-2.0-0.71.8
Extensor digitorum longus weight0.10.20.60.10.30.8
Soleus weight0.61.83.00.31.61.7
Tibialis anterior weight0.10.40.70.20.90.6
Tibia length0.61.63.01.21.70.5
Number of licking bursts0.40.41.01.00.3-0.4
Food consumed during 24 hour testing period0.60.81.21.10.4-1.0
Times rat made contact with spout1.21.42.41.61.3-0.2
Mean time between licks in bursts0.40.50.9-1.0-0.20.8
Mean num. licks in bursts0.00.00.1-0.10.30.1
Std. dev. time between licks in bursts1.92.25.40.9-0.6-2.3
Water consumed over 24 hours1.82.13.31.81.4-1.0
Indifference point 0 sec0.10.10.20.5-0.1-0.5
Indifference point AUC1.01.12.41.0-0.2-1.5
Indifference point function ln k0.81.12.10.61.50.9
Indifference point function log k0.81.12.10.61.50.9
Delay discounting total patch changes 0 sec0.20.30.50.70.1-0.6
Delay discounting total patch changes 12 sec0.30.30.50.70.3-0.7
Delay discounting total patch changes 18 sec1.11.52.8-0.9-1.7-0.9
Delay discounting total patch changes 24 sec0.40.50.90.8-0.3-0.9
Delay discounting total patch changes 6 sec0.50.81.41.21.0-0.1
Delay discounting time to switch 0 sec0.81.22.0-1.4-0.81.0
Delay discounting water rate 0 sec0.20.40.50.60.4-0.7
Delay discounting water rate 12 sec1.21.73.10.41.41.8
Delay discounting water rate 18 sec0.91.22.21.51.20.3
Delay discounting water rate 24 sec0.20.30.6-0.10.60.8
Delay discounting water rate 6 sec0.20.20.7-0.10.20.8
Locomotor activity0.60.91.70.91.30.6
Locomotor testing distance0.10.20.3-0.4-0.5-0.3
Locomotor testing rearing0.40.61.1-1.1-0.80.1
Light reinforcement 10.81.42.00.5-1.4-1.4
Light reinforcement 21.11.53.3-0.5-1.8-0.9
Reaction time number correct0.10.10.30.30.60.2
Reaction time mean minus median1.21.62.61.31.60.8
Reaction time mean minus median AUC1.01.32.01.11.40.9
Reaction time num false alarms0.91.32.41.60.9-0.8
Reaction time num false alarms AUC0.71.01.81.40.8-0.7
Reaction time trials correct on left0.10.10.30.30.60.2
Reaction time trials on left0.10.20.40.30.60.1
Reaction time mean0.30.40.8-0.9-0.70.4
Reaction time mean AUC0.30.50.8-0.9-0.70.3
Median of all reaction times1.11.52.4-1.6-1.40.3
Reaction time omissions0.00.00.1-0.10.20.3
Reaction time false alarm rate0.40.61.21.10.5-0.6
Reaction time premature initiation rate1.41.93.41.80.3-1.5
Reaction time premature initiations1.41.93.71.90.8-1.2
Std. dev. reaction times0.50.60.90.40.91.0
Reaction time trials completed0.10.20.40.30.60.1
Reaction time trials AUC0.10.10.30.10.50.3
Social response proportion0.20.30.40.60.6-0.2
Social responses2.53.25.42.32.0-0.1
Social time0.60.81.8-0.8-0.01.3
Conditioned locomotion0.40.50.8-0.3-0.6-0.9
Cocaine response after cond. corrected0.20.30.6-0.7-0.5-0.2
Cocaine response after cond. not corrected0.10.10.2-0.4-0.3-0.3
Cocaine response before conditioning1.01.22.21.51.1-0.2
Saline control response1.11.52.61.61.2-0.7
Condit. Reinf. active minus inactive responses1.21.52.61.60.8-1.1
Condit. Reinf. active-inactive response ratio1.51.53.01.70.8-1.0
Condit. Reinf. active responses1.92.74.72.21.0-1.5
Condit. Reinf. inactive responses0.70.91.51.20.9-0.7
Condit. Reinf. lever presses0.50.61.01.00.9-0.2
Condit. Reinf. lever reinforcers received1.82.64.62.11.1-1.3
Pavlov. Cond. lever latency0.40.50.7-0.8-0.40.8
Pavlov. Cond. magazine entry latency0.60.71.6-0.30.71.3
Pavlov. Cond. change in total contacts0.40.51.10.31.00.7
Pavlov. Cond. index score0.40.51.00.61.00.3
Pavlov. Cond. latency score0.30.40.80.60.90.2
Pavlov. Cond. lever contacts0.20.30.80.4-0.0-0.9
Pavlov. Cond. magazine entry number0.81.02.30.4-0.8-1.5
Pavlov. Cond. intertrial magazine entries2.12.74.61.90.4-2.2
Pavlov. Cond. lever-magazine prob. diff.0.30.40.80.60.90.2
Pavlov. Cond. response bias0.10.10.30.20.50.1
Conditioned reinforcement - actives0.70.71.00.40.91.0
Conditioned reinforcement - inactives0.20.30.60.40.2-0.8
Conditioned locomotion1.21.42.01.41.40.6
Intermittent access intake day 1-15 change0.80.81.1-1.1-0.8-0.8
Intermittent access intake escalation0.80.81.2-0.8-0.6-1.1
Intermittent access intake escalation 21.61.61.8-1.1-1.3-1.3
Intermitt. access day 1 inactive lever presses0.10.10.20.40.3-0.4
Intermitt. access day 15 inactive lever presses0.20.30.30.50.6-0.4
Intermitt. access escalation Index0.70.61.3-1.1-0.60.4
Intermittent access day 1 total infusions0.20.30.70.30.80.3
Intermittent access day 15 total infusions0.10.10.2-0.30.5-0.2
Intermittent access terminal intake (last 3 days)0.20.20.5-0.70.10.3
Intermittent access total infusions0.20.20.4-0.10.70.3
Intermittent access day 1 locomotion0.20.20.40.20.70.1
Intermittent access day 15 total locomotion0.20.20.40.50.6-0.3
Intermittent access total locomotion0.20.20.40.40.4-0.7
Intermittent access standard deviation0.10.10.2-0.40.10.3
Cocaine induced anxiety0.00.00.0-0.20.20.1
Post-drug Anxiety0.20.20.4-0.7-0.40.1
Baseline Anxiety0.80.81.6-0.7-1.3-0.6
Lifetime Intake0.20.20.50.00.70.3
Incentive Sensitization - Responses0.10.10.2-0.2-0.3-0.5
Incentive Sensitization - Breakpoint0.10.10.2-0.2-0.3-0.4
Progressive ratio test 1 active lever presses1.81.94.10.82.01.0
Progressive ratio test 1 breakpoint1.71.73.70.81.91.0
Progressive ratio test 1 inactive lever presses1.11.22.41.11.50.3
Progressive ratio test 2 active lever presses0.10.20.30.00.6-0.4
Progressive ratio test 2 breakpoint0.20.20.50.20.7-0.3
Progressive ratio test 2 inactive lever presses0.91.01.70.91.3-0.6
Total sessions with >9 infusions0.91.02.00.81.40.6
Short access day 1 total inactive lever presses3.23.65.42.31.9-1.3
Short access day 10 total inactive lever presses0.91.01.61.31.2-0.3
Short access day 1 total infusions0.20.20.30.10.60.5
Short access day 10 total infusions1.21.32.41.01.50.7
Short access total infusions0.40.40.90.40.90.4
Short access day 1 locomotion0.10.10.30.30.5-0.1
Short access day 10 total locomotion0.70.81.00.90.7-1.0
Short access total locomotion1.01.02.10.91.40.4
Compulsive drug intake0.50.51.4-0.4-1.2-0.3
One hour access (0.3 mA shock)0.60.72.00.4-0.2-1.4
One hour access (shock baseline)0.30.40.90.50.9-0.2
Number of responses in last shaping day0.60.61.2-0.70.21.1
Context. condit. distance diff. score0.40.50.91.00.70.1
Locomotion velocity, session 11.71.83.31.80.9-1.2
Locomotion distance, session 10.60.81.80.5-0.4-1.3
Locomotion velocity, session 21.41.73.71.20.0-1.9
Locomotion distance, session 20.81.11.81.20.2-1.3
Locomotion velocity, session 30.30.40.70.80.3-0.6
Locomotion distance, session 30.40.40.60.80.7-0.5
Stereotopy head waving bouts, day 30.50.61.10.61.00.6
Stereotopy head waving duration, day 30.40.51.3-0.20.41.2
Locomotion velocity, session 70.50.50.70.80.80.5
Locomotion distance, session 70.20.20.40.60.1-0.5
Stereotopy head waving bouts, day 71.21.32.31.01.50.8
Stereotopy head waving duration, day 70.50.61.10.81.00.5
Locomotion velocity, session 81.51.83.31.80.5-1.4
Locomotion distance, session 80.91.32.51.60.6-1.0
Degree of sensitization distance0.00.10.10.2-0.3-0.2
Degree of sensitization stereotypy0.40.40.90.00.50.9
Condit. Reinf. active minus inactive responses0.30.40.6-0.7-0.20.7
Condit. Reinf. active-inactive response ratio2.32.54.7-2.2-1.31.1
Condit. Reinf. active responses0.00.10.1-0.3-0.20.2
Condit. Reinf. inactive responses0.81.02.01.40.9-0.3
Incentive salience index mean0.30.30.60.30.80.6
Condit. Reinf. lever presses0.40.50.80.20.90.9
Time in familiar zone, hab. session 10.10.10.1-0.3-0.1-0.3
Time in novel zone, hab. session 11.01.02.6-0.50.41.6
Total zone transitions, hab. session 12.84.06.52.32.60.3
Total locomotion distance, hab. session 10.30.40.80.70.90.2
Locomotion velocity, hab. session 10.30.51.01.00.5-0.4
Time in familiar zone, hab. session 20.30.30.4-0.6-0.6-0.1
Time in novel zone, hab. session 20.40.40.60.40.80.6
Total zone transitions, hab. session 20.40.51.10.4-0.4-1.0
Total locomotion distance, hab. session 20.60.81.50.1-0.9-1.2
Locomotion velocity, hab. session 20.81.12.30.1-1.0-1.5
Novel to familiar place preference ratio0.10.10.2-0.3-0.4-0.3
Novelty place preference0.10.10.2-0.4-0.4-0.1
Time in novel zone, NPP test0.00.00.0-0.2-0.1-0.1
Total zone transitions, NPP test0.71.12.11.51.0-0.4
Total locomotion distance, NPP test0.50.71.51.20.6-0.5
Locomotion velocity, NPP test0.40.51.21.10.5-0.4
Pavlov. Cond. lever latency0.30.40.8-0.9-0.70.0
Pavlov. Cond. magazine entry latency2.22.94.52.02.10.2
Pavlov. Cond. change in total contacts1.41.52.41.31.60.5
Pavlov. Cond. index score1.51.92.91.71.70.2
Pavlov. Cond. latency score1.11.42.31.51.4-0.1
Pavlov. Cond. lever contacts0.50.60.90.90.90.2
Pavlov. Cond. magazine entry number3.13.86.2-2.3-2.5-0.4
Pavlov. Cond. intertrial magazine entries0.81.01.9-0.9-1.4-0.6
Pavlov. Cond. lever-magazine prob. diff.1.21.52.41.51.50.3
Pavlov. Cond. response bias2.02.54.21.72.00.6
Bone: apparent density1.22.04.4-2.1-1.10.5
Bone surface0.71.32.1-1.50.01.3
Bone volume1.52.54.9-2.2-0.61.4
Bone: connectivity density0.10.20.6-0.8-0.20.1
Bone: cortical apparent density2.12.85.5-2.3-1.11.3
Bone: cortical area2.03.05.2-0.11.92.3
Bone: cortical porosity0.70.81.51.20.3-0.9
Bone: cortical porosity0.80.91.81.40.5-0.8
Bone: cortical thickness1.72.96.1-1.21.12.5
Bone: cortical thickness0.00.00.10.10.3-0.2
Bone: cortical tissue density2.43.16.1-2.5-1.41.2
Bone: elastic displacement2.12.44.6-0.1-1.6-2.1
Bone: elastic work0.70.92.20.7-0.2-1.5
Bone: endosteal estimation0.51.11.71.30.9-0.9
Bone: endosteal perimeter0.81.52.71.41.60.2
Bone: final force0.50.81.40.81.20.5
Bone: final moment0.30.50.90.51.00.6
Bone: marrow area0.51.11.71.30.8-0.9
Bone: maximum diameter0.91.72.80.31.71.5
Bone: maximum force1.01.83.20.81.81.3
Bone: maximum moment0.81.42.40.61.51.3
Bone: minimum diameter0.61.12.21.01.50.3
Bone: periosteal estimation0.71.53.10.81.80.9
Bone: periosteal perimeter0.91.42.61.11.60.6
Bone: post-yield work1.21.63.2-1.2-0.11.8
Bone: stiffness2.03.25.51.82.30.9
Bone: tissue strength1.31.32.4-1.20.21.5
Bone: trabecular number0.40.61.3-1.10.00.7
Bone: trabecular spacing0.40.50.80.2-0.8-0.9
Bone: trabecular thickness1.01.22.6-1.6-0.41.0
Bone: trabecular tissue density1.31.83.51.91.1-0.7
Breakpoint value in progressive ratio session0.91.01.60.51.11.3
Distance traveled before self-admin0.40.51.2-0.4-1.10.2
Distance traveled after self-admin0.20.20.50.30.40.7
Delta time in closed arm before/after self-admin1.71.62.51.51.60.4
Delta time in open arm before/after self-admin1.81.74.0-0.9-2.0-0.6
Diff in mean of infusions in LGA sessions1.31.54.0-0.50.32.0
Extinction: sum of active levers before priming0.50.50.80.0-0.9-0.8
Active lever presses in extinction session 60.50.51.0-0.6-1.0-0.1
Delta distance traveled before/after self-admin0.91.02.00.51.40.9
Delta ambulatory time before/after self-admin1.21.32.10.11.41.4
Time in closed arm before self-admin0.60.61.1-0.9-1.0-0.4
Time in closed arm after self-admin0.80.91.40.31.21.1
Time in open arm before self-admin0.10.10.2-0.00.5-0.0
Time in open arm after self-admin1.01.11.9-1.1-1.40.3
Sum of active levers in priming session hrs 5-61.11.12.30.9-0.1-1.5
Time to tail flick, vehicle, before self-admin0.20.20.4-0.50.00.6
Time to tail flick, vehicle, after self-admin0.40.50.90.5-0.5-1.0
Time to tail flick, test, before self-admin0.40.40.70.60.50.8
Time to tail flick, test, after self-admin1.71.73.50.1-1.3-1.9
Delta time to tail flick, vehicle, before/after SA1.51.52.50.1-1.4-1.6
Delta time to tail flick, test, before/after SA0.80.71.6-0.3-0.7-1.3
Ambulatory time before self-admin0.20.20.4-0.2-0.60.4
Ambulatory time after self-admin0.30.30.60.40.40.8
Total heroin consumption0.20.20.5-0.4-0.20.7
Area under the delay curve1.31.42.51.61.0-0.9
Delay disc. indifference point, 0s delay0.40.40.80.60.0-0.9
Delay disc. indifference point, 16s delay0.60.60.90.90.2-1.0
Delay disc. indifference point, 2s delay0.80.81.11.10.8-0.9
Delay disc. indifference point, 24s delay0.10.10.2-0.2-0.50.2
Delay disc. indifference point, 4s delay0.10.10.10.3-0.1-0.3
Delay disc. indifference point, 8s delay1.11.11.91.40.8-0.9
Delay discount exponential model param1.11.12.0-1.4-0.90.8
Delay discount hyperbolic model param1.11.12.0-1.4-0.80.8
Fecal boli incidents, locomotor time 10.80.81.10.6-1.0-1.0
Change in fecal boli incidents, locomotor task0.10.10.3-0.10.50.0
Time >=10cm from walls, locomotor time 10.50.50.7-0.80.20.8
Bouts of movement, locomotor time 10.10.10.10.40.30.0
Total resting periods, locomotor time 10.00.00.10.20.20.2
Rest time, locomotor task time 10.20.20.40.2-0.2-0.7
Distance moved, locomotor task time 10.20.20.6-0.10.10.8
Vertical activity count, locomotor time 10.40.51.1-0.40.31.0
Time >=10cm from walls, locomotor time 20.10.10.10.30.30.0
Bouts of movement, locomotor time 20.80.91.20.41.11.1
Total resting periods, locomotor time 20.40.40.80.50.90.5
Rest time, locomotor task time 20.70.81.31.10.7-0.9
Distance moved, locomotor task time 21.72.03.5-1.5-0.61.9
Vertical activity count, locomotor time 23.94.36.0-2.4-1.12.4
Weight adjusted by age0.20.20.5-0.3-0.7-0.4
Seeking ratio, delayed vs. immediate footshock0.91.01.31.00.9-1.1
Locomotion in novel chamber1.31.62.51.61.0-1.2
Locomotion in novel chamber post-restriction0.91.01.71.11.3-0.2
Progressive ratio1.21.42.61.61.1-0.7
Food seeking constrained by brief footshock0.10.10.2-0.2-0.30.4
Seeking ratio, punishment vs. effort0.81.01.8-1.3-0.90.8
Run reversals in cocaine runway, females1.21.22.9-0.2-0.8-1.7
Run reversals in cocaine runway, males0.40.40.9-0.6-0.10.9
Latency to leave start box in cocaine runway0.00.00.1-0.0-0.30.0
Latency to leave start box in cocaine runway, F0.10.10.2-0.5-0.50.0
Latency to leave start box in cocaine runway, M0.20.20.40.60.2-0.4
Cd content in liver1.71.82.9-1.1-1.7-1.2
Co content in liver0.70.91.6-0.0-1.0-1.3
Cu content in liver0.60.81.4-0.9-1.20.3
Fe content in liver4.45.29.1-3.0-1.32.2
K content in liver0.10.10.20.5-0.0-0.2
Mg content in liver0.20.20.40.7-0.2-0.4
Mn content in liver0.30.40.60.7-0.0-0.8
Na content in liver0.91.02.11.50.7-0.5
Rb content in liver1.21.62.9-1.7-1.20.5
Se content in liver1.31.63.0-1.2-1.7-0.5
Sr content in liver0.70.61.01.00.90.4
Zn content in liver0.20.20.40.7-0.1-0.4