Fgd2

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 BLA gene expression ENSRNOG00000000528 0.09 0.07 1.3e-04 0.06 0.07 0.06 0.08 6.5e-04 1.4e-04 2.6e-04 7.3e-05
2 Brain gene expression ENSRNOG00000000528 0.03 0.03 4.9e-03 0.01 0.02 0.01 0.01 2.2e-02 8.9e-03 1.4e-02 2.5e-02
3 Liver gene expression ENSRNOG00000000528 0.03 0.04 5.4e-04 0.03 0.02 0.02 0.02 4.8e-04 1.6e-03 6.4e-03 1.8e-03
4 NAcc gene expression ENSRNOG00000000528 0.07 0.05 1.7e-06 0.06 0.07 0.07 0.06 1.3e-05 8.8e-06 1.3e-05 1.6e-05

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail2.58.210.2-3.2-2.82.7-2.7
BMI without tail1.53.24.3-2.1-1.81.5-1.7
Body weight7.129.834.0-5.8-5.45.3-5.4
Epididymis fat weight2.04.76.2-2.5-2.12.0-2.0
Glucose0.20.20.7-0.8-0.30.3-0.3
Heart weight2.02.83.41.31.8-1.71.8
Left kidney weight2.98.28.3-2.9-2.92.8-2.9
Right kidney weight3.610.310.8-3.2-3.33.1-3.3
Tail length1.02.93.2-1.7-1.81.5-1.8
Length with tail2.38.38.6-2.9-2.92.8-2.9
Length without tail1.94.14.3-2.1-2.02.0-2.0
Liver weight, left4.67.49.0-2.1-2.83.0-2.9
Liver weight, right2.13.44.0-1.5-2.01.9-2.0
Parametrial fat weight1.63.14.0-1.4-1.82.0-1.9
Retroperitoneal fat weight1.55.05.6-2.4-2.32.1-2.2
Intraocular pressure1.41.92.7-1.0-1.41.7-1.4
Extensor digitorum longus weight0.20.91.01.00.9-0.90.9
Soleus weight0.51.42.4-1.6-1.10.9-1.0
Tibialis anterior weight0.82.62.91.51.6-1.71.7
Tibia length2.36.47.1-2.4-2.62.5-2.7
Number of licking bursts0.60.80.80.90.9-0.90.9
Food consumed during 24 hour testing period0.70.81.2-1.1-0.80.8-0.8
Times rat made contact with spout3.74.25.52.42.0-1.92.0
Mean time between licks in bursts0.60.80.90.71.0-0.90.9
Mean num. licks in bursts0.20.30.50.70.5-0.40.5
Std. dev. time between licks in bursts0.91.02.1-1.5-0.90.8-0.8
Water consumed over 24 hours1.11.31.70.71.2-1.31.2
Indifference point 0 sec0.20.40.5-0.3-0.70.6-0.7
Indifference point AUC0.10.10.20.50.2-0.10.2
Indifference point function ln k0.10.20.30.30.4-0.50.4
Indifference point function log k0.10.20.30.30.4-0.50.4
Delay discounting total patch changes 0 sec0.20.30.4-0.2-0.60.6-0.6
Delay discounting total patch changes 12 sec0.10.10.30.5-0.0-0.10.0
Delay discounting total patch changes 18 sec0.60.71.3-0.4-0.91.1-0.9
Delay discounting total patch changes 24 sec0.30.40.60.80.6-0.60.6
Delay discounting total patch changes 6 sec0.00.10.1-0.1-0.30.3-0.3
Delay discounting time to switch 0 sec1.62.42.9-1.7-1.51.6-1.4
Delay discounting water rate 0 sec0.30.50.60.80.6-0.70.6
Delay discounting water rate 12 sec0.10.20.20.40.4-0.40.4
Delay discounting water rate 18 sec0.60.80.90.90.9-0.90.9
Delay discounting water rate 24 sec0.30.40.40.60.6-0.60.6
Delay discounting water rate 6 sec0.10.20.30.40.4-0.60.4
Locomotor activity0.10.10.2-0.3-0.40.3-0.4
Locomotor testing distance0.00.00.1-0.2-0.20.0-0.1
Locomotor testing rearing1.01.61.7-1.3-1.31.1-1.3
Light reinforcement 11.93.53.9-1.8-2.01.7-2.0
Light reinforcement 22.83.84.0-2.0-1.92.0-1.9
Reaction time number correct0.40.60.9-0.2-0.80.9-0.8
Reaction time mean minus median0.00.10.2-0.0-0.10.4-0.2
Reaction time mean minus median AUC0.10.20.3-0.3-0.30.6-0.3
Reaction time num false alarms0.30.40.70.80.5-0.60.5
Reaction time num false alarms AUC0.91.31.61.31.1-1.21.1
Reaction time trials correct on left0.40.60.9-0.2-0.80.9-0.8
Reaction time trials on left0.40.50.8-0.2-0.70.9-0.8
Reaction time mean0.30.40.6-0.6-0.60.8-0.6
Reaction time mean AUC0.60.91.3-0.8-0.81.1-0.9
Median of all reaction times0.50.60.9-0.8-0.70.9-0.7
Reaction time omissions0.00.00.00.00.10.10.1
Reaction time false alarm rate1.42.02.61.21.4-1.61.4
Reaction time premature initiation rate0.20.30.40.40.4-0.60.5
Reaction time premature initiations0.00.00.00.1-0.1-0.0-0.2
Std. dev. reaction times0.00.00.1-0.2-0.00.3-0.1
Reaction time trials completed0.40.50.8-0.2-0.70.9-0.8
Reaction time trials AUC0.40.50.9-0.2-0.70.9-0.8
Social response proportion0.10.10.2-0.5-0.30.1-0.2
Social responses0.00.00.0-0.10.0-0.10.1
Social time0.20.30.40.70.6-0.50.5
Conditioned locomotion2.22.62.9-1.4-1.71.7-1.7
Cocaine response after cond. corrected1.41.52.4-1.5-1.21.1-1.1
Cocaine response after cond. not corrected1.41.52.4-1.5-1.11.1-1.1
Cocaine response before conditioning0.00.00.00.20.1-0.00.1
Saline control response0.60.80.9-0.9-0.90.9-0.9
Condit. Reinf. active minus inactive responses0.81.01.11.01.0-1.01.0
Condit. Reinf. active-inactive response ratio0.40.40.60.40.6-0.80.6
Condit. Reinf. active responses0.70.91.21.11.0-0.81.0
Condit. Reinf. inactive responses0.10.10.20.2-0.20.5-0.2
Condit. Reinf. lever presses3.64.96.32.52.2-2.02.2
Condit. Reinf. lever reinforcers received1.42.02.41.61.4-1.21.4
Pavlov. Cond. lever latency2.02.84.1-2.0-1.61.3-1.6
Pavlov. Cond. magazine entry latency0.10.20.4-0.2-0.30.6-0.4
Pavlov. Cond. change in total contacts1.52.03.11.81.4-1.11.4
Pavlov. Cond. index score0.60.71.41.20.8-0.60.8
Pavlov. Cond. latency score0.30.40.80.90.6-0.40.6
Pavlov. Cond. lever contacts1.62.23.92.01.4-1.11.4
Pavlov. Cond. magazine entry number0.00.00.1-0.10.1-0.30.2
Pavlov. Cond. intertrial magazine entries0.70.91.11.00.9-1.00.9
Pavlov. Cond. lever-magazine prob. diff.0.30.40.90.90.6-0.30.5
Pavlov. Cond. response bias1.01.32.71.61.1-0.71.0
Conditioned reinforcement - actives0.50.50.6-0.4-0.80.8-0.8
Conditioned reinforcement - inactives0.30.30.80.90.5-0.40.4
Conditioned locomotion0.50.60.8-0.4-0.90.9-0.9
Intermittent access intake day 1-15 change0.30.30.5-0.3-0.60.7-0.7
Intermittent access intake escalation0.70.70.9-0.6-0.80.9-0.9
Intermittent access intake escalation 20.30.30.60.80.5-0.50.4
Intermitt. access day 1 inactive lever presses0.10.10.10.30.1-0.30.2
Intermitt. access day 15 inactive lever presses0.80.81.0-0.8-0.90.9-1.0
Intermitt. access escalation Index0.30.30.40.30.6-0.60.6
Intermittent access day 1 total infusions0.30.30.30.50.6-0.50.6
Intermittent access day 15 total infusions0.00.00.0-0.1-0.10.2-0.2
Intermittent access terminal intake (last 3 days)0.10.10.1-0.3-0.30.3-0.4
Intermittent access total infusions0.10.10.20.50.3-0.30.3
Intermittent access day 1 locomotion0.10.10.1-0.3-0.40.4-0.4
Intermittent access day 15 total locomotion3.63.84.3-1.7-2.02.0-2.1
Intermittent access total locomotion1.21.31.7-0.8-1.21.3-1.3
Intermittent access standard deviation0.60.70.9-0.6-0.90.8-0.9
Cocaine induced anxiety0.20.20.30.60.4-0.40.4
Post-drug Anxiety0.40.50.60.60.7-0.80.7
Baseline Anxiety0.10.10.2-0.20.3-0.50.4
Lifetime Intake0.00.00.00.1-0.20.1-0.2
Incentive Sensitization - Responses1.31.31.61.31.1-1.11.1
Incentive Sensitization - Breakpoint0.80.81.11.00.9-0.80.8
Progressive ratio test 1 active lever presses0.00.00.00.20.0-0.10.0
Progressive ratio test 1 breakpoint0.00.00.00.10.0-0.10.1
Progressive ratio test 1 inactive lever presses0.60.70.8-0.6-0.90.9-0.9
Progressive ratio test 2 active lever presses0.00.00.10.40.1-0.00.1
Progressive ratio test 2 breakpoint0.10.10.20.40.2-0.10.1
Progressive ratio test 2 inactive lever presses0.60.71.21.10.8-0.80.7
Total sessions with >9 infusions0.00.00.1-0.1-0.30.2-0.2
Short access day 1 total inactive lever presses0.10.20.20.40.4-0.50.4
Short access day 10 total inactive lever presses0.00.00.00.1-0.0-0.0-0.0
Short access day 1 total infusions1.01.11.61.20.9-1.01.0
Short access day 10 total infusions0.00.00.10.30.2-0.20.2
Short access total infusions0.00.00.00.1-0.10.0-0.1
Short access day 1 locomotion0.00.00.00.0-0.0-0.10.1
Short access day 10 total locomotion0.40.40.60.70.4-0.80.6
Short access total locomotion0.00.00.0-0.1-0.2-0.0-0.1
Compulsive drug intake2.62.63.31.41.5-1.81.6
One hour access (0.3 mA shock)1.11.32.01.41.1-1.01.1
One hour access (shock baseline)0.10.10.3-0.0-0.20.5-0.3
Number of responses in last shaping day0.60.61.40.30.6-1.20.8
Context. condit. distance diff. score0.20.20.20.40.5-0.40.5
Locomotion velocity, session 10.70.80.80.90.9-0.90.9
Locomotion distance, session 13.34.34.92.22.1-2.02.1
Locomotion velocity, session 20.20.30.30.40.5-0.50.5
Locomotion distance, session 20.81.11.31.11.0-1.01.1
Locomotion velocity, session 30.20.20.4-0.1-0.50.6-0.6
Locomotion distance, session 30.30.40.80.90.5-0.40.5
Stereotopy head waving bouts, day 31.82.12.3-1.3-1.51.5-1.5
Stereotopy head waving duration, day 30.20.20.4-0.6-0.50.4-0.5
Locomotion velocity, session 70.10.10.40.60.2-0.10.2
Locomotion distance, session 71.11.42.41.61.1-1.01.1
Stereotopy head waving bouts, day 70.30.40.5-0.5-0.60.7-0.7
Stereotopy head waving duration, day 71.01.21.4-0.9-1.11.2-1.2
Locomotion velocity, session 80.00.00.00.0-0.00.1-0.0
Locomotion distance, session 80.71.01.11.01.0-0.91.0
Degree of sensitization distance0.00.00.0-0.0-0.0-0.10.0
Degree of sensitization stereotypy0.00.00.10.30.2-0.10.1
Condit. Reinf. active minus inactive responses0.91.11.11.01.1-1.01.0
Condit. Reinf. active-inactive response ratio0.00.00.10.10.2-0.10.2
Condit. Reinf. active responses0.30.40.50.70.7-0.60.6
Condit. Reinf. inactive responses0.50.60.80.90.7-0.70.6
Incentive salience index mean0.40.40.50.60.7-0.70.7
Condit. Reinf. lever presses0.00.00.0-0.00.2-0.20.2
Time in familiar zone, hab. session 10.00.00.00.10.10.00.1
Time in novel zone, hab. session 10.40.30.4-0.6-0.60.6-0.6
Total zone transitions, hab. session 13.34.65.32.32.1-2.22.1
Total locomotion distance, hab. session 12.13.03.11.81.7-1.81.7
Locomotion velocity, hab. session 12.02.93.11.71.6-1.81.6
Time in familiar zone, hab. session 21.21.21.41.21.1-1.11.1
Time in novel zone, hab. session 21.41.41.8-1.0-1.21.3-1.2
Total zone transitions, hab. session 20.40.50.80.90.6-0.60.7
Total locomotion distance, hab. session 22.43.24.12.01.7-1.71.7
Locomotion velocity, hab. session 23.04.15.02.21.9-1.92.0
Novel to familiar place preference ratio0.50.50.8-0.9-0.70.6-0.6
Novelty place preference0.40.40.7-0.8-0.60.5-0.6
Time in novel zone, NPP test0.50.50.7-0.9-0.70.6-0.6
Total zone transitions, NPP test1.52.22.71.61.4-1.41.4
Total locomotion distance, NPP test1.21.72.21.51.2-1.21.3
Locomotion velocity, NPP test1.92.73.21.81.6-1.61.6
Pavlov. Cond. lever latency0.30.40.5-0.4-0.70.7-0.7
Pavlov. Cond. magazine entry latency0.20.30.40.60.6-0.40.6
Pavlov. Cond. change in total contacts0.60.60.7-0.8-0.70.8-0.7
Pavlov. Cond. index score0.00.00.10.10.2-0.10.3
Pavlov. Cond. latency score0.00.00.0-0.10.1-0.10.2
Pavlov. Cond. lever contacts0.20.20.30.30.5-0.50.5
Pavlov. Cond. magazine entry number0.60.80.9-0.8-0.90.8-1.0
Pavlov. Cond. intertrial magazine entries0.10.10.20.30.3-0.40.3
Pavlov. Cond. lever-magazine prob. diff.0.00.00.10.10.2-0.10.2
Pavlov. Cond. response bias0.80.91.10.91.0-0.91.0
Bone: apparent density0.71.21.51.21.1-1.01.1
Bone surface0.00.00.0-0.10.0-0.10.0
Bone volume0.00.00.0-0.0-0.00.1-0.1
Bone: connectivity density0.60.91.00.91.0-0.90.9
Bone: cortical apparent density0.00.00.10.20.10.10.1
Bone: cortical area0.71.11.7-1.3-0.91.0-0.9
Bone: cortical porosity0.00.00.0-0.1-0.1-0.0-0.0
Bone: cortical porosity0.00.00.0-0.1-0.0-0.0-0.0
Bone: cortical thickness0.00.00.0-0.20.1-0.10.2
Bone: cortical thickness0.00.00.00.2-0.10.2-0.1
Bone: cortical tissue density0.00.00.00.10.00.2-0.0
Bone: elastic displacement0.00.00.0-0.00.2-0.10.2
Bone: elastic work0.10.10.3-0.6-0.30.3-0.2
Bone: endosteal estimation3.67.88.2-2.7-2.92.8-2.8
Bone: endosteal perimeter2.34.65.4-2.3-2.12.0-2.1
Bone: final force5.08.18.5-2.9-2.92.8-2.8
Bone: final moment4.37.27.4-2.7-2.72.7-2.6
Bone: marrow area3.78.08.4-2.7-2.92.8-2.9
Bone: maximum diameter0.81.42.0-1.4-1.11.1-1.0
Bone: maximum force2.03.43.6-1.9-1.91.8-1.8
Bone: maximum moment1.52.72.8-1.7-1.61.6-1.6
Bone: minimum diameter2.13.95.5-2.3-1.91.8-1.8
Bone: periosteal estimation2.75.66.1-2.5-2.42.3-2.3
Bone: periosteal perimeter1.42.33.0-1.7-1.51.5-1.4
Bone: post-yield work0.20.30.3-0.5-0.60.5-0.6
Bone: stiffness1.52.32.5-1.4-1.61.6-1.6
Bone: tissue strength0.00.00.00.10.0-0.10.0
Bone: trabecular number1.32.02.21.51.4-1.31.4
Bone: trabecular spacing2.02.62.8-1.5-1.71.6-1.6
Bone: trabecular thickness0.20.30.4-0.2-0.50.7-0.6
Bone: trabecular tissue density0.00.00.10.4-0.00.1-0.1
Breakpoint value in progressive ratio session0.30.30.50.40.6-0.70.6
Distance traveled before self-admin0.60.70.8-0.8-0.90.8-0.9
Distance traveled after self-admin0.00.10.2-0.4-0.1-0.0-0.1
Delta time in closed arm before/after self-admin1.91.82.1-1.4-1.41.1-1.3
Delta time in open arm before/after self-admin0.80.81.11.10.9-0.70.8
Diff in mean of infusions in LGA sessions0.80.91.10.61.0-1.11.0
Extinction: sum of active levers before priming0.20.20.50.20.3-0.70.4
Active lever presses in extinction session 60.20.20.4-0.6-0.20.5-0.2
Delta distance traveled before/after self-admin0.50.60.70.50.8-0.80.8
Delta ambulatory time before/after self-admin0.90.91.20.71.0-1.11.0
Time in closed arm before self-admin0.30.40.40.70.5-0.70.6
Time in closed arm after self-admin0.10.10.2-0.4-0.40.3-0.4
Time in open arm before self-admin0.50.50.70.60.8-0.70.7
Time in open arm after self-admin2.42.62.91.71.7-1.51.6
Sum of active levers in priming session hrs 5-60.50.50.90.20.7-1.00.7
Time to tail flick, vehicle, before self-admin1.71.72.1-1.1-1.31.5-1.4
Time to tail flick, vehicle, after self-admin0.10.10.2-0.00.3-0.40.3
Time to tail flick, test, before self-admin0.10.10.10.30.4-0.30.3
Time to tail flick, test, after self-admin0.10.10.20.40.30.00.1
Delta time to tail flick, vehicle, before/after SA0.70.70.90.60.9-0.90.9
Delta time to tail flick, test, before/after SA1.31.21.5-0.8-1.11.2-1.2
Ambulatory time before self-admin0.30.30.4-0.5-0.60.6-0.6
Ambulatory time after self-admin0.30.30.60.20.6-0.70.6
Total heroin consumption1.01.21.41.01.1-1.21.0
Area under the delay curve1.61.72.3-1.5-1.21.3-1.2
Delay disc. indifference point, 0s delay0.50.60.9-1.0-0.70.8-0.6
Delay disc. indifference point, 16s delay0.40.40.6-0.7-0.40.8-0.5
Delay disc. indifference point, 2s delay0.00.00.00.00.1-0.10.2
Delay disc. indifference point, 24s delay3.73.65.1-2.3-1.71.9-1.7
Delay disc. indifference point, 4s delay1.81.92.2-1.5-1.31.4-1.3
Delay disc. indifference point, 8s delay2.12.22.3-1.5-1.51.5-1.5
Delay discount exponential model param1.21.31.81.31.0-1.21.0
Delay discount hyperbolic model param0.90.91.31.10.9-1.00.8
Fecal boli incidents, locomotor time 10.00.00.0-0.0-0.10.2-0.1
Change in fecal boli incidents, locomotor task0.50.50.8-0.9-0.80.5-0.6
Time >=10cm from walls, locomotor time 11.71.71.9-1.3-1.41.2-1.3
Bouts of movement, locomotor time 10.30.30.50.70.5-0.40.5
Total resting periods, locomotor time 10.10.10.20.50.3-0.10.2
Rest time, locomotor task time 10.10.20.2-0.4-0.40.4-0.4
Distance moved, locomotor task time 10.10.10.1-0.2-0.30.4-0.3
Vertical activity count, locomotor time 10.60.60.6-0.8-0.70.8-0.8
Time >=10cm from walls, locomotor time 27.68.08.9-3.0-2.92.7-2.8
Bouts of movement, locomotor time 20.00.10.1-0.0-0.20.3-0.3
Total resting periods, locomotor time 20.00.10.10.40.2-0.20.2
Rest time, locomotor task time 20.00.00.0-0.2-0.10.1-0.1
Distance moved, locomotor task time 22.02.32.5-1.3-1.51.6-1.6
Vertical activity count, locomotor time 21.11.21.3-1.1-1.11.0-1.1
Weight adjusted by age1.82.03.2-1.8-1.41.0-1.3
Seeking ratio, delayed vs. immediate footshock0.00.00.1-0.20.20.00.1
Locomotion in novel chamber0.20.30.40.60.6-0.40.6
Locomotion in novel chamber post-restriction1.82.12.5-1.1-1.61.5-1.6
Progressive ratio2.52.93.6-1.2-1.71.9-1.8
Food seeking constrained by brief footshock0.00.00.10.00.10.30.2
Seeking ratio, punishment vs. effort1.21.52.00.71.3-1.31.4
Run reversals in cocaine runway, females0.20.20.4-0.3-0.40.6-0.4
Run reversals in cocaine runway, males0.10.10.30.60.2-0.10.0
Latency to leave start box in cocaine runway0.20.20.30.10.4-0.50.5
Latency to leave start box in cocaine runway, F0.10.10.20.10.3-0.40.4
Latency to leave start box in cocaine runway, M0.00.00.0-0.00.0-0.00.1
Cd content in liver0.91.01.3-0.8-1.01.1-1.0
Co content in liver2.32.72.9-1.6-1.71.6-1.7
Cu content in liver3.64.44.52.12.1-2.12.1
Fe content in liver3.94.64.9-2.0-2.22.2-2.2
K content in liver1.31.31.51.11.1-1.21.1
Mg content in liver2.32.42.81.41.5-1.71.6
Mn content in liver0.10.10.10.20.2-0.30.3
Na content in liver0.30.30.50.60.5-0.70.5
Rb content in liver0.20.20.2-0.4-0.50.4-0.4
Se content in liver2.93.54.01.71.9-2.01.9
Sr content in liver0.00.00.00.00.1-0.10.1
Zn content in liver2.02.22.9-1.7-1.41.5-1.3