Dnajc19

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver mRNA stability Dnajc19 0.06 0.04 4.5e-05 0.03 0.02 0.02 0.02 5.6e-04 2.6e-03 9.4e-04 2.1e-03
2 Liver gene expression Dnajc19 0.08 0.04 1.5e-07 0.04 0.04 0.04 0.04 1.8e-05 4.1e-05 6.3e-05 8.5e-05
3 Adipose mRNA stability Dnajc19 0.04 0.02 1.4e-03 0.01 0.02 0.01 0.01 2.8e-02 3.9e-03 1.4e-02 6.7e-03
4 Adipose gene expression Dnajc19 0.04 0.02 4.7e-03 -0 0 -0 0 6.0e-01 7.4e-02 5.4e-01 3.3e-01

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density3.76.27.0-2.7-2.62.52.1
Area under the delay curve1.01.11.4-0.9-1.11.20.9
BMI with tail0.61.83.1-1.8-1.60.81.1
BMI without tail2.14.35.9-2.4-2.11.91.8
Body weight0.00.10.2-0.4-0.1-0.4-0.2
Weight adjusted by age1.21.41.71.31.2-1.1-1.1
Bone surface0.20.40.4-0.6-0.60.60.6
Bone volume0.50.81.0-1.0-0.91.00.6
Breakpoint value in progressive ratio session3.13.45.1-2.3-1.81.41.8
Number of licking bursts1.01.21.6-1.3-1.30.80.9
Context. condit. distance diff. score3.44.25.4-2.2-2.12.31.3
Locomotion velocity, session 11.01.12.00.81.0-1.4-0.7
Locomotion distance, session 10.30.41.10.40.5-1.0-0.2
Locomotion velocity, session 22.93.35.31.51.6-2.3-1.8
Locomotion distance, session 20.91.32.40.91.0-1.5-1.0
Locomotion velocity, session 30.00.00.1-0.3-0.0-0.10.2
Locomotion distance, session 30.30.30.50.40.5-0.7-0.5
Stereotopy head waving bouts, day 30.10.10.20.30.3-0.4-0.2
Stereotopy head waving duration, day 30.60.71.0-0.9-0.80.71.0
Locomotion velocity, session 70.91.02.00.80.9-1.4-0.8
Locomotion distance, session 71.01.31.91.00.9-1.2-1.4
Stereotopy head waving bouts, day 70.91.01.7-1.3-1.10.70.8
Stereotopy head waving duration, day 71.21.42.1-1.4-1.30.91.1
Locomotion velocity, session 81.92.33.0-1.7-1.61.41.3
Locomotion distance, session 80.50.71.0-1.0-1.00.90.4
Degree of sensitization distance1.11.11.81.10.9-0.8-1.3
Degree of sensitization stereotypy1.61.72.4-1.6-1.41.11.2
Conditioned locomotion0.10.10.3-0.0-0.00.5-0.2
Cocaine response after cond. corrected0.10.10.40.00.20.6-0.1
Cocaine response after cond. not corrected0.20.20.40.60.60.2-0.1
Cocaine response before conditioning0.10.20.60.10.0-0.10.8
Saline control response0.30.40.70.80.8-0.6-0.2
Bone: connectivity density2.13.33.7-1.9-1.91.71.7
Bone: cortical apparent density0.00.10.10.0-0.20.2-0.4
Bone: cortical area0.20.20.4-0.5-0.30.60.4
Bone: cortical porosity0.60.72.2-0.5-0.30.51.5
Bone: cortical porosity0.80.92.7-0.6-0.40.61.6
Bone: cortical thickness0.60.91.3-0.9-0.61.11.1
Bone: cortical thickness0.20.20.60.20.4-0.8-0.4
Bone: cortical tissue density0.10.10.20.0-0.30.2-0.4
Condit. Reinf. active minus inactive responses1.71.92.31.31.5-1.5-1.2
Condit. Reinf. active-inactive response ratio1.21.32.01.01.4-1.1-1.1
Condit. Reinf. active responses0.91.12.10.91.0-1.4-0.7
Condit. Reinf. inactive responses0.20.20.4-0.1-0.4-0.40.6
Incentive salience index mean1.82.22.51.51.6-1.6-1.3
Condit. Reinf. lever presses0.50.61.00.90.8-1.0-0.4
Condit. Reinf. active minus inactive responses1.31.62.41.61.2-1.3-0.7
Condit. Reinf. active-inactive response ratio1.41.52.31.51.2-1.0-1.1
Condit. Reinf. active responses2.73.74.82.21.9-2.2-1.3
Condit. Reinf. inactive responses1.31.72.71.21.4-1.6-0.8
Condit. Reinf. lever presses0.10.20.30.50.4-0.5-0.2
Condit. Reinf. lever reinforcers received2.43.44.42.01.8-2.1-1.3
Conditioned reinforcement - actives0.50.50.60.80.7-0.7-0.6
Conditioned reinforcement - inactives0.00.00.0-0.00.00.0-0.0
Conditioned locomotion0.70.81.80.70.7-1.3-0.7
Patch foraging indifference point 0 sec1.01.52.1-1.5-1.41.10.8
Patch foraging indifference point AUC1.31.52.4-1.3-1.20.61.6
Delay disc. indifference point, 0s delay0.30.40.60.60.5-0.8-0.6
Delay disc. indifference point, 16s delay1.41.41.6-1.1-1.31.31.1
Delay disc. indifference point, 2s delay0.40.50.7-0.6-0.80.80.6
Delay disc. indifference point, 24s delay1.01.01.5-0.8-1.11.20.8
Delay disc. indifference point, 4s delay0.20.20.3-0.6-0.40.30.5
Delay disc. indifference point, 8s delay0.10.10.3-0.2-0.40.60.2
Indifference point function ln k1.21.73.01.31.3-0.7-1.7
Indifference point function log k1.21.73.01.31.3-0.7-1.7
Patch foraging total patch changes 0 sec1.01.72.2-1.5-1.41.21.0
Patch foraging total patch changes 12 sec2.22.83.1-1.7-1.71.51.8
Patch foraging total patch changes 18 sec1.21.52.5-1.6-1.21.01.2
Patch foraging total patch changes 24 sec5.36.58.6-2.9-2.72.12.5
Patch foraging total patch changes 6 sec5.27.88.7-3.0-2.72.62.9
Patch foraging time to switch 0 sec0.10.10.20.30.20.1-0.5
Patch foraging water rate 0 sec0.71.11.1-1.0-1.01.01.0
Patch foraging water rate 12 sec0.00.00.10.30.3-0.00.0
Patch foraging water rate 18 sec0.20.20.40.60.4-0.5-0.4
Patch foraging water rate 24 sec1.41.92.7-1.5-1.61.21.1
Patch foraging water rate 6 sec0.00.00.1-0.1-0.00.20.3
Seeking ratio, delayed vs. immediate footshock0.50.60.9-0.9-0.70.60.9
Distance traveled before self-admin2.62.73.3-1.7-1.81.51.5
Distance traveled after self-admin0.50.50.9-0.9-0.80.40.7
Extensor digitorum longus weight0.10.50.7-0.8-0.8-0.20.6
Bone: elastic displacement0.10.10.2-0.2-0.00.40.0
Bone: elastic work0.10.20.40.40.60.0-0.5
Bone: endosteal estimation0.61.31.81.00.8-1.3-1.2
Bone: endosteal perimeter0.51.11.31.11.0-1.2-0.9
Epididymis fat weight0.71.71.91.31.3-1.4-1.1
Delta time in closed arm before/after self-admin0.20.20.2-0.3-0.50.30.4
Delta time in open arm before/after self-admin0.90.81.01.01.0-0.8-0.9
Diff in mean of infusions in LGA sessions0.70.81.3-1.2-0.60.90.8
Delay discount exponential model param1.21.31.61.01.2-1.3-1.0
Extinction: sum of active levers before priming0.10.10.20.20.3-0.4-0.2
Active lever presses in extinction session 60.10.10.1-0.4-0.20.00.2
Bone: final force0.10.10.30.30.3-0.50.0
Bone: final moment0.00.00.00.10.1-0.20.2
Food consumed during 24 hour testing period0.10.10.30.10.1-0.3-0.6
Glucose1.52.22.91.71.6-1.3-1.4
Heart weight0.50.71.1-0.7-0.70.81.0
Delay discount hyperbolic model param0.80.91.20.81.0-1.1-0.9
Intermittent access intake day 1-15 change0.50.50.7-0.8-0.80.50.7
Intermittent access intake escalation0.20.20.2-0.5-0.50.30.4
Intermittent access intake escalation 20.20.20.30.30.3-0.5-0.3
Intermitt. access day 1 inactive lever presses0.00.00.0-0.00.10.20.0
Intermitt. access day 15 inactive lever presses0.60.60.80.90.9-0.7-0.7
Intermitt. access escalation Index0.10.10.20.30.4-0.4-0.3
Intermittent access day 1 total infusions3.74.35.22.12.3-2.0-1.9
Intermittent access day 15 total infusions0.60.71.10.70.8-1.0-0.7
Intermittent access terminal intake (last 3 days)2.62.93.71.61.7-1.9-1.5
Intermittent access total infusions2.42.73.51.61.7-1.9-1.4
Intermittent access day 1 locomotion1.31.31.71.11.2-1.3-1.0
Intermittent access day 15 total locomotion0.50.61.0-1.0-0.80.30.8
Intermittent access total locomotion0.20.20.80.20.3-0.9-0.2
Intermittent access standard deviation0.10.10.1-0.3-0.30.40.3
Left kidney weight0.10.30.5-0.6-0.60.70.0
Right kidney weight0.20.61.0-0.9-1.00.70.4
Cocaine induced anxiety0.50.61.10.70.7-1.1-0.6
Post-drug Anxiety1.82.02.61.41.4-1.6-1.2
Baseline Anxiety0.40.40.7-0.6-0.60.80.5
Tail length0.10.40.8-0.6-0.40.90.4
Length with tail0.10.40.50.70.7-0.4-0.7
Length without tail1.63.43.81.81.8-1.9-1.9
Times rat made contact with spout1.51.82.51.31.2-1.3-1.6
Lifetime Intake3.03.44.11.81.9-2.0-1.6
Liver weight, left2.43.85.41.71.7-2.0-2.3
Liver weight, right0.20.30.40.60.6-0.5-0.6
Locomotor activity1.72.73.92.01.9-1.5-0.9
Locomotor testing distance0.81.31.81.31.3-1.3-0.2
Locomotor testing rearing0.10.10.10.30.4-0.20.3
Locomotion in novel chamber0.50.61.20.70.6-1.1-0.6
Locomotion in novel chamber post-restriction0.20.20.3-0.3-0.40.50.6
Fecal boli incidents, locomotor time 11.41.61.91.41.3-0.9-1.4
Change in fecal boli incidents, locomotor task0.60.60.7-0.8-0.90.40.8
Time >=10cm from walls, locomotor time 10.10.10.10.40.2-0.2-0.2
Bouts of movement, locomotor time 10.00.00.00.10.20.1-0.1
Total resting periods, locomotor time 10.00.10.10.20.30.2-0.2
Rest time, locomotor task time 11.31.42.01.41.1-1.1-1.2
Distance moved, locomotor task time 10.80.91.7-1.3-0.80.60.9
Vertical activity count, locomotor time 11.31.31.9-1.4-1.11.01.0
Time >=10cm from walls, locomotor time 20.10.10.20.50.2-0.4-0.4
Bouts of movement, locomotor time 20.70.71.5-0.7-0.51.20.8
Total resting periods, locomotor time 20.40.41.0-0.4-0.21.00.6
Rest time, locomotor task time 20.00.00.10.2-0.00.10.0
Distance moved, locomotor task time 20.10.10.5-0.00.3-0.7-0.1
Vertical activity count, locomotor time 20.80.91.70.90.7-1.3-0.8
Light reinforcement 10.10.20.60.70.6-0.2-0.1
Light reinforcement 20.00.10.20.20.2-0.1-0.4
Bone: marrow area0.51.11.50.90.7-1.2-1.2
Bone: maximum diameter0.10.10.2-0.4-0.20.40.3
Bone: maximum force0.10.20.40.60.5-0.4-0.3
Bone: maximum moment0.10.10.20.50.4-0.1-0.2
Mean time between licks in bursts0.60.81.11.01.0-0.3-1.0
Mean num. licks in bursts1.92.32.91.71.7-1.3-1.4
Cd content in liver1.01.11.71.11.3-1.0-0.7
Co content in liver0.40.50.70.70.7-0.9-0.6
Cu content in liver0.20.30.40.30.7-0.3-0.6
Fe content in liver0.50.60.90.90.9-0.6-0.5
K content in liver1.31.31.7-1.1-1.11.30.9
Mg content in liver0.80.81.5-0.8-0.71.20.6
Mn content in liver0.40.51.2-0.5-0.51.10.5
Na content in liver1.11.11.6-1.1-1.20.90.9
Rb content in liver0.50.61.0-0.9-0.40.71.0
Se content in liver1.01.21.51.21.2-1.2-0.7
Sr content in liver0.00.00.10.1-0.1-0.30.1
Zn content in liver0.10.10.3-0.4-0.20.5-0.2
Bone: minimum diameter0.30.60.80.90.8-0.5-0.8
Time in familiar zone, hab. session 10.70.70.80.90.7-0.8-0.9
Time in novel zone, hab. session 13.93.84.7-2.0-1.81.92.2
Total zone transitions, hab. session 10.50.71.4-0.8-0.80.51.2
Total locomotion distance, hab. session 12.94.15.9-1.9-2.01.62.4
Locomotion velocity, hab. session 12.53.55.2-1.8-1.91.42.3
Time in familiar zone, hab. session 20.10.10.30.10.10.40.5
Time in novel zone, hab. session 20.70.71.2-1.1-1.00.60.5
Total zone transitions, hab. session 20.00.10.10.20.2-0.40.2
Total locomotion distance, hab. session 20.10.10.4-0.1-0.2-0.10.6
Locomotion velocity, hab. session 20.10.10.20.2-0.0-0.30.4
Novel to familiar place preference ratio8.08.29.0-2.9-2.93.02.7
Novelty place preference10.410.611.3-3.3-3.33.43.1
Time in novel zone, NPP test11.411.812.5-3.5-3.53.53.2
Total zone transitions, NPP test1.11.52.81.11.2-1.7-0.8
Total locomotion distance, NPP test0.40.61.20.80.7-1.1-0.3
Locomotion velocity, NPP test0.81.12.01.11.0-1.4-0.5
Intraocular pressure0.91.31.71.31.2-1.0-1.0
Delta distance traveled before/after self-admin1.41.51.81.21.3-1.3-1.1
Delta ambulatory time before/after self-admin1.01.11.40.91.1-1.2-0.9
Parametrial fat weight0.30.71.20.60.5-1.0-1.1
Pavlov. Cond. lever latency1.52.02.7-1.6-1.21.41.2
Pavlov. Cond. magazine entry latency0.00.00.00.2-0.2-0.1-0.2
Pavlov. Cond. change in total contacts0.40.40.70.80.6-0.6-0.5
Pavlov. Cond. index score0.81.01.41.10.6-1.2-0.9
Pavlov. Cond. latency score1.21.52.01.40.9-1.4-1.1
Pavlov. Cond. lever contacts1.92.32.81.71.3-1.6-1.4
Pavlov. Cond. magazine entry number0.10.10.2-0.10.40.30.4
Pavlov. Cond. intertrial magazine entries0.10.10.30.30.6-0.2-0.3
Pavlov. Cond. lever-magazine prob. diff.0.50.71.00.90.4-1.0-0.8
Pavlov. Cond. response bias0.10.20.30.3-0.1-0.5-0.5
Pavlov. Cond. lever latency0.20.30.70.40.5-0.2-0.8
Pavlov. Cond. magazine entry latency0.10.10.2-0.2-0.20.3-0.4
Pavlov. Cond. change in total contacts0.50.71.20.80.8-1.1-0.3
Pavlov. Cond. index score0.00.00.0-0.2-0.2-0.10.1
Pavlov. Cond. latency score0.00.00.1-0.1-0.1-0.2-0.1
Pavlov. Cond. lever contacts0.60.81.3-0.9-0.90.61.2
Pavlov. Cond. magazine entry number0.10.10.30.50.5-0.20.1
Pavlov. Cond. intertrial magazine entries0.10.10.40.20.3-0.60.1
Pavlov. Cond. lever-magazine prob. diff.0.00.00.1-0.1-0.1-0.3-0.1
Pavlov. Cond. response bias0.50.60.9-0.8-0.80.61.0
Time in closed arm before self-admin0.30.30.5-0.7-0.30.60.5
Time in closed arm after self-admin0.10.20.3-0.4-0.20.50.3
Time in open arm before self-admin0.70.71.2-0.8-1.10.60.8
Time in open arm after self-admin0.10.10.10.30.1-0.3-0.2
Bone: periosteal estimation0.10.30.40.40.4-0.6-0.6
Bone: periosteal perimeter0.00.10.10.30.3-0.00.2
Bone: post-yield work1.82.53.01.71.4-1.4-1.7
Progressive ratio test 1 active lever presses1.31.42.11.01.3-1.4-0.9
Progressive ratio test 1 breakpoint1.51.62.41.11.3-1.6-1.0
Progressive ratio test 1 inactive lever presses1.21.31.51.11.2-1.2-1.0
Progressive ratio test 2 active lever presses1.21.22.11.01.1-1.5-0.9
Progressive ratio test 2 breakpoint0.70.81.60.70.8-1.3-0.7
Progressive ratio test 2 inactive lever presses0.70.81.00.80.9-1.0-0.7
Incentive Sensitization - Responses0.20.20.70.20.2-0.8-0.2
Incentive Sensitization - Breakpoint0.30.30.90.30.4-1.0-0.4
Sum of active levers in priming session hrs 5-62.92.83.71.51.7-1.9-1.5
Progressive ratio0.20.20.30.60.4-0.5-0.2
Food seeking constrained by brief footshock0.10.10.2-0.3-0.30.50.3
Seeking ratio, punishment vs. effort0.60.71.0-1.0-0.80.90.6
Retroperitoneal fat weight0.41.31.71.21.0-1.3-1.1
Reaction time number correct2.94.35.62.02.2-2.4-1.6
Reaction time mean minus median0.00.00.1-0.00.10.0-0.3
Reaction time mean minus median AUC0.20.20.4-0.6-0.40.50.2
Reaction time num false alarms0.10.20.5-0.2-0.30.00.7
Reaction time num false alarms AUC0.10.10.2-0.1-0.1-0.20.5
Reaction time trials correct on left2.94.35.62.02.2-2.4-1.6
Reaction time trials on left3.14.45.72.12.2-2.4-1.6
Reaction time mean1.31.82.31.31.5-1.2-1.3
Reaction time mean AUC0.91.31.81.11.3-1.0-1.0
Median of all reaction times1.31.72.31.31.5-1.2-1.1
Reaction time omissions0.30.30.50.60.7-0.2-0.7
Reaction time false alarm rate1.21.62.1-1.2-1.31.11.5
Reaction time premature initiation rate1.41.93.1-1.1-1.21.81.3
Reaction time premature initiations0.00.00.10.20.20.20.2
Std. dev. reaction times0.10.10.30.10.4-0.2-0.5
Reaction time trials completed3.14.45.72.12.2-2.4-1.6
Reaction time trials AUC2.94.15.22.02.2-2.3-1.5
Run reversals in cocaine runway, females0.10.10.1-0.20.4-0.10.2
Run reversals in cocaine runway, males0.60.60.80.90.6-0.9-0.6
Latency to leave start box in cocaine runway0.10.10.10.30.3-0.0-0.3
Latency to leave start box in cocaine runway, F0.10.10.10.30.30.0-0.3
Latency to leave start box in cocaine runway, M0.00.00.10.0-0.10.3-0.0
Std. dev. time between licks in bursts0.10.10.20.30.4-0.0-0.2
Total sessions with >9 infusions1.31.41.71.31.3-1.1-1.1
Short access day 1 total inactive lever presses0.40.50.7-0.9-0.80.20.7
Short access day 10 total inactive lever presses2.42.72.9-1.7-1.61.71.5
Short access day 1 total infusions0.70.71.10.80.8-1.1-0.7
Short access day 10 total infusions2.02.22.41.51.5-1.5-1.3
Short access total infusions2.73.03.31.81.8-1.8-1.6
Short access day 1 locomotion0.40.40.6-0.7-0.80.20.6
Short access day 10 total locomotion0.30.40.5-0.7-0.70.50.6
Short access total locomotion0.80.81.10.90.9-1.1-0.8
One hour access (0.3 mA shock)0.70.81.30.80.9-1.1-0.7
Compulsive drug intake0.60.61.00.70.6-1.0-0.6
One hour access (shock baseline)1.01.11.41.01.2-1.1-0.9
Social response proportion2.22.42.81.71.6-1.2-1.6
Social responses0.10.10.1-0.2-0.30.40.3
Social time2.23.04.42.12.1-1.0-1.4
Soleus weight11.533.736.1-6.0-6.05.95.4
Bone: stiffness0.00.00.10.30.20.10.0
Tibialis anterior weight0.31.02.0-1.4-1.10.00.9
Time to tail flick, vehicle, before self-admin0.50.50.70.80.8-0.3-0.7
Time to tail flick, vehicle, after self-admin1.71.92.21.51.5-1.2-1.3
Time to tail flick, test, before self-admin2.52.53.4-1.5-1.51.81.3
Time to tail flick, test, after self-admin3.63.74.5-2.0-1.82.11.7
Delta time to tail flick, vehicle, before/after SA1.01.01.31.11.1-0.9-1.0
Delta time to tail flick, test, before/after SA1.11.01.2-1.1-1.01.00.9
Tibia length4.111.612.63.53.4-3.3-3.4
Ambulatory time before self-admin2.12.22.5-1.5-1.61.41.4
Ambulatory time after self-admin0.30.40.6-0.8-0.60.40.6
Bone: tissue strength0.20.20.50.30.20.70.3
Total heroin consumption5.05.97.6-2.7-2.52.12.3
Bone: trabecular number6.510.211.1-3.3-3.33.03.2
Bone: trabecular spacing3.74.85.32.12.3-2.1-2.3
Bone: trabecular thickness0.40.50.8-0.9-0.70.8-0.0
Bone: trabecular tissue density0.40.61.01.00.9-0.2-0.9
Water consumed over 24 hours0.10.20.40.10.0-0.5-0.6
Number of responses in last shaping day0.60.71.0-0.9-1.00.60.8