Dnajb5

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 NAcc gene expression Dnajb5 0.02 0.02 8.5e-03 0.01 0.01 0 0 6.5e-02 5.9e-02 6.8e-02 1.1e-01
2 RMTg gene expression Dnajb5 0.15 0.1 4.8e-03 0.11 0.12 0.1 0.11 6.0e-04 3.4e-04 9.6e-04 7.7e-04
3 Liver gene expression Dnajb5 0.03 0.02 5.5e-03 0.02 0.02 0.02 0.02 2.0e-03 5.0e-03 2.1e-03 1.2e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.40.71.81.3-0.1-0.7
Area under the delay curve0.30.40.5-0.60.50.7
BMI with tail0.72.46.52.5-0.1-0.9
BMI without tail2.85.814.43.81.60.8
Body weight1.56.116.04.01.40.6
Weight adjusted by age1.21.42.00.51.41.4
Bone surface0.40.81.61.30.70.5
Bone volume0.30.51.31.10.3-0.0
Breakpoint value in progressive ratio session1.71.92.9-0.21.61.7
Number of licking bursts1.92.26.52.50.3-0.2
Context. condit. distance diff. score0.10.20.2-0.4-0.5-0.3
Locomotion velocity, session 17.58.111.71.23.33.4
Locomotion distance, session 12.12.73.70.91.91.9
Locomotion velocity, session 20.70.92.31.5-0.1-0.6
Locomotion distance, session 22.23.04.22.11.71.4
Locomotion velocity, session 31.51.82.70.51.51.6
Locomotion distance, session 32.12.33.21.81.51.3
Stereotopy head waving bouts, day 31.31.52.70.01.41.7
Stereotopy head waving duration, day 30.40.50.9-0.40.71.0
Locomotion velocity, session 70.00.00.1-0.2-0.10.0
Locomotion distance, session 70.30.30.40.60.60.6
Stereotopy head waving bouts, day 71.41.53.11.71.00.8
Stereotopy head waving duration, day 70.60.71.01.00.80.7
Locomotion velocity, session 81.01.21.80.41.31.4
Locomotion distance, session 80.81.21.50.71.21.2
Degree of sensitization distance0.70.71.3-1.1-0.7-0.5
Degree of sensitization stereotypy0.60.61.61.30.50.3
Conditioned locomotion0.80.91.40.11.11.2
Cocaine response after cond. corrected1.92.13.4-1.01.41.8
Cocaine response after cond. not corrected2.32.54.2-0.71.72.1
Cocaine response before conditioning0.30.41.21.10.0-0.3
Saline control response2.02.63.11.51.81.6
Bone: connectivity density0.30.50.60.8-0.4-0.8
Bone: cortical apparent density1.72.33.5-0.5-1.8-1.9
Bone: cortical area0.81.23.21.8-0.3-0.7
Bone: cortical porosity0.30.30.7-0.8-0.3-0.2
Bone: cortical porosity0.00.00.0-0.1-0.0-0.1
Bone: cortical thickness0.81.42.20.8-1.1-1.5
Bone: cortical thickness0.50.60.8-0.4-0.8-0.9
Bone: cortical tissue density1.52.03.0-0.5-1.7-1.7
Condit. Reinf. active minus inactive responses0.20.20.50.7-0.1-0.3
Condit. Reinf. active-inactive response ratio0.50.50.8-0.9-0.7-0.5
Condit. Reinf. active responses1.01.23.51.90.1-0.3
Condit. Reinf. inactive responses1.21.43.81.9-0.2-0.6
Incentive salience index mean1.92.36.12.50.80.3
Condit. Reinf. lever presses6.18.117.24.12.21.4
Condit. Reinf. active minus inactive responses0.20.30.80.90.1-0.2
Condit. Reinf. active-inactive response ratio0.10.10.10.2-0.3-0.3
Condit. Reinf. active responses0.91.33.61.90.5-0.0
Condit. Reinf. inactive responses1.31.54.02.0-0.1-0.8
Condit. Reinf. lever presses1.11.52.51.6-0.7-1.3
Condit. Reinf. lever reinforcers received1.01.54.22.00.5-0.0
Conditioned reinforcement - actives0.10.10.20.4-0.3-0.0
Conditioned reinforcement - inactives0.00.00.10.10.10.2
Conditioned locomotion0.20.20.40.70.20.3
Patch foraging indifference point 0 sec3.65.88.31.02.82.9
Patch foraging indifference point AUC3.64.210.13.21.40.6
Delay disc. indifference point, 0s delay0.50.51.1-1.10.40.6
Delay disc. indifference point, 16s delay1.31.32.0-0.71.21.4
Delay disc. indifference point, 2s delay0.20.30.5-0.0-0.6-0.7
Delay disc. indifference point, 24s delay0.10.10.1-0.4-0.1-0.0
Delay disc. indifference point, 4s delay0.00.00.1-0.3-0.1-0.0
Delay disc. indifference point, 8s delay0.00.00.00.10.20.1
Indifference point function ln k1.01.43.6-1.9-0.6-0.2
Indifference point function log k1.01.43.6-1.9-0.6-0.2
Patch foraging total patch changes 0 sec3.45.57.51.42.72.7
Patch foraging total patch changes 12 sec0.91.23.01.70.70.2
Patch foraging total patch changes 18 sec1.01.21.31.11.11.1
Patch foraging total patch changes 24 sec2.12.63.61.91.51.4
Patch foraging total patch changes 6 sec3.55.25.92.32.42.2
Patch foraging time to switch 0 sec2.03.15.1-2.2-1.7-1.2
Patch foraging water rate 0 sec2.03.23.61.91.91.6
Patch foraging water rate 12 sec0.20.30.50.30.70.6
Patch foraging water rate 18 sec0.30.40.70.5-0.4-0.8
Patch foraging water rate 24 sec1.01.42.3-0.3-1.3-1.5
Patch foraging water rate 6 sec0.40.61.51.20.40.1
Seeking ratio, delayed vs. immediate footshock1.21.44.12.00.2-0.3
Distance traveled before self-admin4.04.37.92.81.81.3
Distance traveled after self-admin0.50.51.21.1-0.3-0.5
Extensor digitorum longus weight2.28.521.94.71.70.8
Bone: elastic displacement3.64.17.1-2.7-1.8-1.3
Bone: elastic work4.86.28.0-2.0-2.8-2.6
Bone: endosteal estimation1.12.43.21.81.51.3
Bone: endosteal perimeter1.63.33.41.81.91.7
Epididymis fat weight0.51.11.81.30.80.9
Delta time in closed arm before/after self-admin1.01.01.61.3-0.6-1.0
Delta time in open arm before/after self-admin0.30.30.4-0.40.50.6
Diff in mean of infusions in LGA sessions0.10.10.1-0.3-0.3-0.1
Delay discount exponential model param0.30.30.40.5-0.5-0.7
Extinction: sum of active levers before priming0.70.72.0-1.4-0.3-0.2
Active lever presses in extinction session 60.30.30.8-0.90.20.4
Bone: final force0.50.92.41.60.4-0.0
Bone: final moment0.40.61.71.30.0-0.3
Food consumed during 24 hour testing period0.91.11.61.30.90.9
Glucose0.60.92.01.40.70.5
Heart weight0.70.91.31.20.90.8
Delay discount hyperbolic model param0.30.30.40.4-0.5-0.6
Intermittent access intake day 1-15 change1.01.01.60.6-1.0-1.3
Intermittent access intake escalation0.80.81.00.9-0.7-1.0
Intermittent access intake escalation 21.91.93.40.9-1.2-1.8
Intermitt. access day 1 inactive lever presses0.40.40.91.00.50.4
Intermitt. access day 15 inactive lever presses0.40.40.70.40.80.6
Intermitt. access escalation Index1.41.31.61.31.20.8
Intermittent access day 1 total infusions0.70.81.4-0.60.91.2
Intermittent access day 15 total infusions0.10.20.40.60.20.2
Intermittent access terminal intake (last 3 days)0.30.40.90.90.40.3
Intermittent access total infusions0.50.50.80.90.60.6
Intermittent access day 1 locomotion0.80.81.1-1.10.61.0
Intermittent access day 15 total locomotion0.30.30.9-1.0-0.00.3
Intermittent access total locomotion0.40.40.9-0.9-0.6-0.3
Intermittent access standard deviation0.20.30.40.6-0.3-0.6
Left kidney weight0.82.22.61.41.61.4
Right kidney weight0.30.91.30.41.11.1
Cocaine induced anxiety0.30.41.0-1.0-0.2-0.1
Post-drug Anxiety0.30.30.70.80.50.2
Baseline Anxiety0.40.41.11.0-0.3-0.4
Tail length1.75.110.53.21.81.2
Length with tail0.93.54.62.11.81.6
Length without tail0.20.30.8-0.90.10.4
Times rat made contact with spout0.20.30.30.6-0.5-0.6
Lifetime Intake1.51.72.01.11.41.4
Liver weight, left0.30.41.11.00.40.2
Liver weight, right0.00.10.1-0.10.30.3
Locomotor activity0.00.00.00.20.1-0.2
Locomotor testing distance0.30.61.00.21.00.8
Locomotor testing rearing0.71.12.01.41.00.5
Locomotion in novel chamber0.50.60.8-0.4-0.9-0.9
Locomotion in novel chamber post-restriction1.31.62.31.0-1.2-1.5
Fecal boli incidents, locomotor time 10.60.61.4-1.2-0.7-0.3
Change in fecal boli incidents, locomotor task1.71.61.71.31.31.3
Time >=10cm from walls, locomotor time 11.01.01.70.31.11.3
Bouts of movement, locomotor time 11.01.12.2-1.5-0.8-0.6
Total resting periods, locomotor time 11.92.13.3-1.8-1.4-1.1
Rest time, locomotor task time 14.95.47.2-1.7-2.7-2.5
Distance moved, locomotor task time 13.74.05.01.92.21.8
Vertical activity count, locomotor time 14.04.15.71.52.42.1
Time >=10cm from walls, locomotor time 20.20.20.20.40.40.5
Bouts of movement, locomotor time 20.20.20.70.80.1-0.1
Total resting periods, locomotor time 20.10.10.20.4-0.2-0.3
Rest time, locomotor task time 20.91.01.3-1.2-0.9-0.9
Distance moved, locomotor task time 20.20.30.40.7-0.3-0.6
Vertical activity count, locomotor time 20.50.50.80.90.70.6
Light reinforcement 14.37.810.72.13.32.9
Light reinforcement 25.57.411.01.23.33.1
Bone: marrow area1.02.13.31.81.31.1
Bone: maximum diameter0.91.64.62.10.50.1
Bone: maximum force1.11.95.62.40.4-0.1
Bone: maximum moment0.81.44.02.00.1-0.4
Mean time between licks in bursts0.10.20.5-0.7-0.3-0.1
Mean num. licks in bursts1.21.43.5-1.9-0.7-0.4
Cd content in liver0.50.50.70.8-0.6-0.8
Co content in liver0.40.51.0-1.00.40.7
Cu content in liver1.11.31.5-1.2-1.2-1.0
Fe content in liver2.42.94.10.72.02.0
K content in liver0.40.40.7-0.30.70.8
Mg content in liver0.30.30.8-0.90.10.3
Mn content in liver0.40.40.70.2-0.7-0.8
Na content in liver0.50.51.3-1.1-0.4-0.1
Rb content in liver1.41.75.1-2.2-0.20.3
Se content in liver0.70.91.91.4-0.4-0.8
Sr content in liver0.10.10.40.60.1-0.1
Zn content in liver0.50.50.9-0.0-0.8-0.9
Bone: minimum diameter0.10.20.2-0.3-0.5-0.4
Time in familiar zone, hab. session 14.94.66.4-1.0-2.5-2.5
Time in novel zone, hab. session 13.23.15.1-0.71.92.3
Total zone transitions, hab. session 10.00.00.00.0-0.1-0.1
Total locomotion distance, hab. session 10.81.22.00.3-1.2-1.4
Locomotion velocity, hab. session 10.81.11.51.2-0.7-1.1
Time in familiar zone, hab. session 22.42.53.3-1.1-1.8-1.7
Time in novel zone, hab. session 21.91.93.1-0.71.41.8
Total zone transitions, hab. session 21.01.31.61.01.31.1
Total locomotion distance, hab. session 20.30.41.11.00.30.0
Locomotion velocity, hab. session 20.40.51.41.20.3-0.1
Novel to familiar place preference ratio1.61.72.7-1.60.81.3
Novelty place preference1.81.84.1-2.00.51.1
Time in novel zone, NPP test2.12.25.0-2.20.51.2
Total zone transitions, NPP test1.41.92.41.31.51.4
Total locomotion distance, NPP test1.82.43.31.81.51.3
Locomotion velocity, NPP test1.62.34.12.01.41.0
Intraocular pressure1.72.44.02.01.51.0
Delta distance traveled before/after self-admin0.50.50.6-0.8-0.8-0.6
Delta ambulatory time before/after self-admin1.11.21.8-1.3-1.1-0.8
Parametrial fat weight0.30.60.70.80.80.8
Pavlov. Cond. lever latency3.94.911.9-3.5-1.5-0.7
Pavlov. Cond. magazine entry latency0.20.20.60.80.0-0.2
Pavlov. Cond. change in total contacts1.51.63.82.00.90.4
Pavlov. Cond. index score1.31.74.82.20.60.0
Pavlov. Cond. latency score1.31.64.42.10.60.1
Pavlov. Cond. lever contacts2.53.07.72.81.10.4
Pavlov. Cond. magazine entry number0.30.41.1-1.1-0.10.2
Pavlov. Cond. intertrial magazine entries0.10.10.20.5-0.1-0.2
Pavlov. Cond. lever-magazine prob. diff.1.11.43.92.00.2-0.3
Pavlov. Cond. response bias1.41.74.62.20.70.1
Pavlov. Cond. lever latency1.41.92.8-1.70.81.5
Pavlov. Cond. magazine entry latency0.40.40.5-0.6-0.7-0.6
Pavlov. Cond. change in total contacts1.92.64.80.6-1.7-2.2
Pavlov. Cond. index score1.01.22.20.2-1.2-1.5
Pavlov. Cond. latency score1.21.52.60.3-1.3-1.6
Pavlov. Cond. lever contacts0.70.91.41.2-0.5-1.0
Pavlov. Cond. magazine entry number1.41.72.80.11.51.7
Pavlov. Cond. intertrial magazine entries0.30.40.60.80.60.6
Pavlov. Cond. lever-magazine prob. diff.1.11.42.40.2-1.3-1.6
Pavlov. Cond. response bias0.70.91.60.7-0.9-1.2
Time in closed arm before self-admin1.21.43.7-1.9-0.6-0.1
Time in closed arm after self-admin0.40.40.6-0.5-0.8-0.5
Time in open arm before self-admin2.52.73.81.91.61.3
Time in open arm after self-admin1.51.72.01.41.41.0
Bone: periosteal estimation0.81.64.02.00.80.5
Bone: periosteal perimeter0.81.41.51.21.21.1
Bone: post-yield work1.41.92.81.71.31.1
Progressive ratio test 1 active lever presses0.90.91.40.61.21.0
Progressive ratio test 1 breakpoint1.11.11.50.71.21.2
Progressive ratio test 1 inactive lever presses3.13.44.61.12.12.1
Progressive ratio test 2 active lever presses1.21.32.30.31.31.5
Progressive ratio test 2 breakpoint1.01.12.10.01.21.4
Progressive ratio test 2 inactive lever presses0.30.40.50.70.60.5
Incentive Sensitization - Responses0.60.61.10.30.71.1
Incentive Sensitization - Breakpoint0.40.40.90.10.60.9
Sum of active levers in priming session hrs 5-61.51.43.3-1.80.40.9
Progressive ratio0.00.00.1-0.20.20.2
Food seeking constrained by brief footshock6.07.412.23.52.61.9
Seeking ratio, punishment vs. effort1.21.53.31.80.90.7
Retroperitoneal fat weight0.10.30.4-0.6-0.7-0.4
Reaction time number correct0.30.50.70.40.80.8
Reaction time mean minus median2.93.86.60.1-2.2-2.6
Reaction time mean minus median AUC1.82.34.20.7-1.5-2.1
Reaction time num false alarms0.40.61.1-0.1-0.8-1.0
Reaction time num false alarms AUC0.10.20.30.6-0.1-0.4
Reaction time trials correct on left0.30.50.70.40.80.8
Reaction time trials on left0.30.40.60.30.80.8
Reaction time mean3.14.35.6-1.6-2.4-2.2
Reaction time mean AUC3.75.06.3-1.7-2.5-2.4
Median of all reaction times2.53.44.3-2.1-1.9-1.5
Reaction time omissions0.91.22.2-1.5-0.9-0.7
Reaction time false alarm rate0.40.61.0-0.3-0.8-1.0
Reaction time premature initiation rate2.12.84.0-2.0-1.6-1.4
Reaction time premature initiations1.01.42.5-1.6-1.0-0.9
Std. dev. reaction times3.24.57.1-0.7-2.5-2.7
Reaction time trials completed0.30.40.60.30.80.8
Reaction time trials AUC0.30.40.60.30.70.8
Run reversals in cocaine runway, females0.40.40.6-0.2-0.8-0.8
Run reversals in cocaine runway, males0.10.10.1-0.2-0.3-0.2
Latency to leave start box in cocaine runway0.30.30.90.9-0.1-0.2
Latency to leave start box in cocaine runway, F0.10.10.20.00.30.4
Latency to leave start box in cocaine runway, M1.11.12.21.50.90.6
Std. dev. time between licks in bursts0.30.30.6-0.8-0.4-0.4
Total sessions with >9 infusions2.12.33.80.41.71.9
Short access day 1 total inactive lever presses2.12.43.61.91.51.2
Short access day 10 total inactive lever presses0.20.20.40.70.1-0.3
Short access day 1 total infusions3.53.74.71.62.21.9
Short access day 10 total infusions2.12.43.21.01.71.8
Short access total infusions2.42.73.60.91.91.9
Short access day 1 locomotion0.50.60.9-0.20.90.9
Short access day 10 total locomotion0.91.01.3-1.2-1.0-0.8
Short access total locomotion0.50.60.80.20.90.9
One hour access (0.3 mA shock)0.81.01.30.71.11.1
Compulsive drug intake0.30.30.70.40.40.9
One hour access (shock baseline)0.81.01.50.71.21.0
Social response proportion1.51.62.7-1.7-1.3-0.6
Social responses0.20.30.80.90.30.2
Social time0.10.10.2-0.10.20.5
Soleus weight1.64.77.30.52.62.7
Bone: stiffness1.62.57.12.70.5-0.1
Tibialis anterior weight4.113.931.15.62.81.6
Time to tail flick, vehicle, before self-admin0.90.92.2-1.5-0.6-0.5
Time to tail flick, vehicle, after self-admin0.00.00.10.10.20.1
Time to tail flick, test, before self-admin0.10.10.10.4-0.3-0.3
Time to tail flick, test, after self-admin0.50.50.80.4-0.8-0.9
Delta time to tail flick, vehicle, before/after SA0.20.20.50.70.30.3
Delta time to tail flick, test, before/after SA0.10.10.1-0.3-0.3-0.2
Tibia length0.82.33.50.61.81.9
Ambulatory time before self-admin4.04.15.92.42.01.6
Ambulatory time after self-admin0.30.30.50.70.40.4
Bone: tissue strength0.10.10.20.4-0.2-0.2
Total heroin consumption0.60.71.1-0.31.01.0
Bone: trabecular number0.50.81.51.2-0.4-1.0
Bone: trabecular spacing0.30.30.6-0.1-0.7-0.7
Bone: trabecular thickness0.10.20.2-0.4-0.4-0.4
Bone: trabecular tissue density1.21.74.62.10.70.1
Water consumed over 24 hours0.30.41.21.10.20.1
Number of responses in last shaping day4.14.36.00.92.42.5