Diras3

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 NAcc gene expression Diras3 0.02 0.02 1.0e-03 0.02 0.03 0.02 0.02 1.7e-03 6.2e-04 1.8e-03 1.7e-03
2 BLA gene expression Diras3 0.05 0.04 1.6e-03 0.05 0.04 0.03 0.05 7.9e-04 2.1e-03 9.6e-03 1.2e-03
3 Adipose gene expression Diras3 0.15 0.1 0.0e+00 0.13 0.14 0.14 0.14 1.5e-14 6.1e-15 6.0e-15 4.8e-15

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.10.10.2-0.20.20.5
Area under the delay curve0.10.10.1-0.30.30.0
BMI with tail2.16.98.5-2.92.92.0
BMI without tail0.51.01.6-1.11.30.1
Body weight0.10.51.10.6-0.4-1.1
Weight adjusted by age0.10.10.10.1-0.3-0.4
Bone surface0.00.00.1-0.20.10.3
Bone volume0.00.10.2-0.20.10.4
Breakpoint value in progressive ratio session0.00.00.1-0.0-0.00.2
Number of licking bursts0.20.30.60.3-0.4-0.8
Context. condit. distance diff. score1.61.92.41.5-1.5-1.1
Locomotion velocity, session 10.30.30.50.5-0.7-0.4
Locomotion distance, session 10.40.50.9-0.60.51.0
Locomotion velocity, session 20.10.10.3-0.1-0.00.5
Locomotion distance, session 20.40.50.8-0.60.60.9
Locomotion velocity, session 30.20.30.6-0.40.30.8
Locomotion distance, session 30.00.00.00.2-0.1-0.0
Stereotopy head waving bouts, day 30.20.20.40.4-0.6-0.3
Stereotopy head waving duration, day 30.30.30.60.5-0.8-0.3
Locomotion velocity, session 70.60.71.2-0.50.71.1
Locomotion distance, session 71.11.41.8-1.01.21.3
Stereotopy head waving bouts, day 71.01.11.41.0-1.2-0.9
Stereotopy head waving duration, day 70.40.50.70.6-0.8-0.6
Locomotion velocity, session 80.10.10.20.4-0.4-0.1
Locomotion distance, session 80.10.10.3-0.10.00.6
Degree of sensitization distance0.20.20.2-0.40.40.4
Degree of sensitization stereotypy0.20.30.40.5-0.6-0.4
Conditioned locomotion1.21.41.61.2-1.3-1.1
Cocaine response after cond. corrected0.40.50.6-0.70.80.5
Cocaine response after cond. not corrected1.82.02.1-1.41.51.3
Cocaine response before conditioning2.73.23.7-1.71.71.9
Saline control response0.20.30.4-0.50.50.7
Bone: connectivity density0.00.00.10.2-0.20.1
Bone: cortical apparent density8.411.111.53.4-3.4-3.2
Bone: cortical area1.21.81.91.3-1.3-1.4
Bone: cortical porosity0.00.00.00.0-0.10.2
Bone: cortical porosity0.20.30.4-0.50.40.6
Bone: cortical thickness1.01.61.81.4-1.3-1.1
Bone: cortical thickness0.81.01.01.0-0.9-1.0
Bone: cortical tissue density8.611.311.73.4-3.4-3.2
Condit. Reinf. active minus inactive responses0.50.60.8-0.80.90.6
Condit. Reinf. active-inactive response ratio2.42.62.8-1.71.71.5
Condit. Reinf. active responses0.20.30.3-0.40.60.6
Condit. Reinf. inactive responses1.72.02.41.5-1.6-1.2
Incentive salience index mean0.40.50.5-0.70.70.6
Condit. Reinf. lever presses0.10.10.3-0.40.10.5
Condit. Reinf. active minus inactive responses0.30.40.40.6-0.7-0.6
Condit. Reinf. active-inactive response ratio0.40.40.50.6-0.7-0.7
Condit. Reinf. active responses0.00.00.0-0.10.10.1
Condit. Reinf. inactive responses0.60.80.9-0.90.90.8
Condit. Reinf. lever presses1.82.42.6-1.51.51.6
Condit. Reinf. lever reinforcers received0.00.00.0-0.10.10.2
Conditioned reinforcement - actives1.81.82.11.4-1.4-1.2
Conditioned reinforcement - inactives0.30.30.40.6-0.6-0.4
Conditioned locomotion0.91.01.4-0.90.91.2
Patch foraging indifference point 0 sec3.04.85.32.3-2.3-2.0
Patch foraging indifference point AUC2.42.83.11.7-1.8-1.5
Delay disc. indifference point, 0s delay0.10.10.10.2-0.2-0.3
Delay disc. indifference point, 16s delay0.00.00.0-0.2-0.00.1
Delay disc. indifference point, 2s delay0.10.10.1-0.30.30.2
Delay disc. indifference point, 24s delay0.00.00.1-0.20.1-0.3
Delay disc. indifference point, 4s delay0.20.20.40.3-0.2-0.7
Delay disc. indifference point, 8s delay0.20.20.3-0.50.50.1
Indifference point function ln k0.60.81.00.8-0.9-1.0
Indifference point function log k0.60.81.00.8-0.9-1.0
Patch foraging total patch changes 0 sec3.25.25.72.4-2.4-2.1
Patch foraging total patch changes 12 sec3.14.04.62.1-2.1-1.7
Patch foraging total patch changes 18 sec1.31.62.51.3-1.6-0.8
Patch foraging total patch changes 24 sec0.10.10.20.4-0.4-0.2
Patch foraging total patch changes 6 sec1.82.72.81.7-1.6-1.6
Patch foraging time to switch 0 sec10.616.417.3-4.24.13.8
Patch foraging water rate 0 sec17.628.230.65.5-5.4-5.0
Patch foraging water rate 12 sec9.514.515.43.8-3.7-3.9
Patch foraging water rate 18 sec4.86.56.92.6-2.4-2.6
Patch foraging water rate 24 sec3.95.45.72.4-2.3-2.3
Patch foraging water rate 6 sec4.26.26.92.6-2.5-2.3
Seeking ratio, delayed vs. immediate footshock0.30.40.60.6-0.8-0.4
Distance traveled before self-admin0.00.00.1-0.20.30.0
Distance traveled after self-admin0.40.50.50.7-0.7-0.7
Extensor digitorum longus weight6.224.325.64.8-5.1-4.9
Bone: elastic displacement0.70.80.80.9-0.9-0.9
Bone: elastic work0.20.20.20.4-0.5-0.5
Bone: endosteal estimation0.10.20.4-0.70.50.2
Bone: endosteal perimeter0.00.10.2-0.0-0.0-0.4
Epididymis fat weight4.610.711.8-3.33.43.1
Delta time in closed arm before/after self-admin0.00.00.1-0.20.30.0
Delta time in open arm before/after self-admin0.60.60.80.7-0.7-0.9
Diff in mean of infusions in LGA sessions0.00.00.00.2-0.1-0.1
Delay discount exponential model param0.00.00.10.3-0.20.1
Extinction: sum of active levers before priming0.00.00.1-0.00.00.3
Active lever presses in extinction session 61.11.11.31.1-1.1-0.9
Bone: final force0.30.50.60.8-0.6-0.7
Bone: final moment0.40.70.70.8-0.7-0.9
Food consumed during 24 hour testing period0.10.10.10.4-0.4-0.4
Glucose0.60.91.31.2-0.9-0.8
Heart weight0.00.10.2-0.10.40.1
Delay discount hyperbolic model param0.00.10.10.3-0.30.0
Intermittent access intake day 1-15 change1.61.62.1-1.11.11.5
Intermittent access intake escalation1.91.92.6-1.21.21.6
Intermittent access intake escalation 20.10.10.3-0.30.20.5
Intermitt. access day 1 inactive lever presses2.42.62.91.7-1.6-1.5
Intermitt. access day 15 inactive lever presses0.70.80.91.0-0.9-0.8
Intermitt. access escalation Index0.40.40.60.5-0.4-0.8
Intermittent access day 1 total infusions0.40.40.5-0.70.70.5
Intermittent access day 15 total infusions2.02.32.6-1.51.51.6
Intermittent access terminal intake (last 3 days)2.22.42.4-1.61.61.6
Intermittent access total infusions0.91.01.0-0.91.01.0
Intermittent access day 1 locomotion1.01.01.1-1.01.01.0
Intermittent access day 15 total locomotion0.40.40.6-0.60.60.8
Intermittent access total locomotion0.60.60.8-0.70.70.9
Intermittent access standard deviation3.73.94.2-1.91.92.1
Left kidney weight0.61.72.11.3-1.1-1.4
Right kidney weight0.30.71.00.8-0.6-1.0
Cocaine induced anxiety3.13.53.61.9-1.9-1.9
Post-drug Anxiety2.62.93.11.7-1.7-1.8
Baseline Anxiety1.61.71.7-1.31.31.3
Tail length3.09.19.53.1-2.9-3.1
Length with tail3.813.715.43.9-3.7-3.5
Length without tail1.53.34.02.0-2.0-1.4
Times rat made contact with spout0.30.30.50.6-0.7-0.4
Lifetime Intake0.50.50.7-0.70.70.8
Liver weight, left3.65.76.72.3-2.2-2.6
Liver weight, right0.00.10.20.1-0.0-0.4
Locomotor activity0.00.00.10.3-0.0-0.1
Locomotor testing distance0.10.20.50.7-0.5-0.2
Locomotor testing rearing1.82.84.2-1.51.42.1
Locomotion in novel chamber5.36.57.92.6-2.2-2.8
Locomotion in novel chamber post-restriction0.00.00.1-0.30.0-0.2
Fecal boli incidents, locomotor time 11.31.41.9-1.41.20.8
Change in fecal boli incidents, locomotor task0.10.10.20.4-0.3-0.4
Time >=10cm from walls, locomotor time 10.40.40.5-0.70.60.4
Bouts of movement, locomotor time 10.70.81.2-1.10.70.9
Total resting periods, locomotor time 10.80.91.3-1.10.80.9
Rest time, locomotor task time 10.50.51.00.5-0.5-1.0
Distance moved, locomotor task time 10.90.91.9-0.60.71.4
Vertical activity count, locomotor time 10.40.40.60.8-0.8-0.1
Time >=10cm from walls, locomotor time 20.50.50.60.8-0.6-0.7
Bouts of movement, locomotor time 22.42.63.11.5-1.6-1.8
Total resting periods, locomotor time 21.92.12.71.3-1.4-1.6
Rest time, locomotor task time 20.70.81.60.6-0.6-1.3
Distance moved, locomotor task time 20.80.92.0-0.50.71.4
Vertical activity count, locomotor time 20.40.40.60.8-0.80.0
Light reinforcement 10.00.10.1-0.10.20.3
Light reinforcement 21.31.71.9-1.41.41.2
Bone: marrow area0.10.20.4-0.60.40.1
Bone: maximum diameter0.10.30.50.3-0.4-0.7
Bone: maximum force0.40.60.70.8-0.7-0.8
Bone: maximum moment0.30.60.70.7-0.7-0.8
Mean time between licks in bursts0.91.21.4-1.21.21.0
Mean num. licks in bursts0.10.10.30.0-0.00.6
Cd content in liver0.40.40.60.6-0.3-0.8
Co content in liver0.70.91.11.0-1.0-0.8
Cu content in liver0.91.11.6-1.11.30.7
Fe content in liver0.10.20.3-0.30.60.2
K content in liver0.10.10.20.3-0.5-0.2
Mg content in liver0.10.10.30.2-0.6-0.1
Mn content in liver0.10.10.10.1-0.30.3
Na content in liver0.00.00.0-0.10.00.1
Rb content in liver0.60.70.80.9-0.8-0.8
Se content in liver0.10.10.1-0.20.1-0.3
Sr content in liver0.40.30.50.5-0.4-0.7
Zn content in liver0.30.30.60.5-0.8-0.5
Bone: minimum diameter0.71.31.61.1-1.1-1.3
Time in familiar zone, hab. session 11.00.91.8-0.80.71.3
Time in novel zone, hab. session 10.10.10.2-0.20.1-0.4
Total zone transitions, hab. session 10.60.91.3-0.90.81.1
Total locomotion distance, hab. session 10.00.00.00.1-0.00.1
Locomotion velocity, hab. session 10.30.40.60.8-0.7-0.4
Time in familiar zone, hab. session 20.91.01.5-0.80.91.2
Time in novel zone, hab. session 20.00.00.1-0.10.0-0.4
Total zone transitions, hab. session 20.70.91.2-0.90.91.1
Total locomotion distance, hab. session 20.30.40.60.7-0.6-0.6
Locomotion velocity, hab. session 20.50.60.80.9-0.8-0.6
Novel to familiar place preference ratio0.20.20.3-0.50.50.3
Novelty place preference0.10.10.2-0.40.40.2
Time in novel zone, NPP test0.10.10.1-0.40.40.2
Total zone transitions, NPP test0.10.20.3-0.40.20.5
Total locomotion distance, NPP test0.00.00.00.2-0.2-0.2
Locomotion velocity, NPP test0.00.10.10.3-0.3-0.2
Intraocular pressure0.10.10.2-0.30.20.4
Delta distance traveled before/after self-admin0.00.00.00.1-0.20.2
Delta ambulatory time before/after self-admin0.40.50.70.8-0.9-0.3
Parametrial fat weight0.00.00.10.00.1-0.4
Pavlov. Cond. lever latency0.60.80.90.9-0.8-0.9
Pavlov. Cond. magazine entry latency0.50.61.0-0.80.51.0
Pavlov. Cond. change in total contacts0.40.40.8-0.60.40.9
Pavlov. Cond. index score0.81.01.2-1.10.81.1
Pavlov. Cond. latency score0.50.60.8-0.90.60.9
Pavlov. Cond. lever contacts0.70.91.0-1.00.81.0
Pavlov. Cond. magazine entry number1.01.21.41.2-0.9-1.2
Pavlov. Cond. intertrial magazine entries5.16.26.72.6-2.3-2.5
Pavlov. Cond. lever-magazine prob. diff.0.50.70.8-0.90.60.9
Pavlov. Cond. response bias1.11.41.8-1.20.91.4
Pavlov. Cond. lever latency2.53.44.11.8-1.7-2.0
Pavlov. Cond. magazine entry latency5.26.06.5-2.52.52.3
Pavlov. Cond. change in total contacts4.25.86.2-2.42.52.3
Pavlov. Cond. index score5.57.17.3-2.62.72.7
Pavlov. Cond. latency score5.46.77.0-2.62.62.6
Pavlov. Cond. lever contacts3.24.44.8-2.12.02.2
Pavlov. Cond. magazine entry number4.15.15.62.3-2.4-2.1
Pavlov. Cond. intertrial magazine entries4.86.27.32.6-2.7-2.1
Pavlov. Cond. lever-magazine prob. diff.6.27.88.0-2.82.82.8
Pavlov. Cond. response bias4.35.85.8-2.42.42.4
Time in closed arm before self-admin2.93.33.6-1.91.81.7
Time in closed arm after self-admin1.61.61.8-1.41.31.1
Time in open arm before self-admin5.05.45.62.4-2.3-2.3
Time in open arm after self-admin3.23.63.91.9-1.8-2.0
Bone: periosteal estimation0.20.40.80.5-0.6-0.9
Bone: periosteal perimeter0.10.20.50.3-0.3-0.7
Bone: post-yield work1.11.51.61.3-1.1-1.3
Progressive ratio test 1 active lever presses0.00.10.1-0.20.20.3
Progressive ratio test 1 breakpoint0.20.20.2-0.30.40.5
Progressive ratio test 1 inactive lever presses2.42.73.11.7-1.7-1.4
Progressive ratio test 2 active lever presses0.00.00.1-0.10.20.3
Progressive ratio test 2 breakpoint0.00.00.1-0.10.20.3
Progressive ratio test 2 inactive lever presses0.70.81.01.0-0.9-0.7
Incentive Sensitization - Responses0.00.00.0-0.10.20.2
Incentive Sensitization - Breakpoint0.00.00.0-0.00.10.1
Sum of active levers in priming session hrs 5-60.40.40.8-0.40.40.9
Progressive ratio0.30.40.50.7-0.5-0.6
Food seeking constrained by brief footshock1.62.02.41.5-1.4-1.3
Seeking ratio, punishment vs. effort0.10.10.10.3-0.3-0.1
Retroperitoneal fat weight0.20.60.9-0.81.00.4
Reaction time number correct2.73.94.32.1-2.1-1.8
Reaction time mean minus median0.10.10.2-0.40.4-0.2
Reaction time mean minus median AUC0.10.10.2-0.40.4-0.2
Reaction time num false alarms0.71.01.11.1-1.1-0.9
Reaction time num false alarms AUC1.31.82.01.4-1.4-1.3
Reaction time trials correct on left2.73.94.32.1-2.1-1.8
Reaction time trials on left2.73.94.32.1-2.1-1.8
Reaction time mean0.81.11.3-1.11.10.8
Reaction time mean AUC0.50.70.9-0.90.90.5
Median of all reaction times0.50.70.8-0.90.90.7
Reaction time omissions1.11.51.91.1-1.2-1.4
Reaction time false alarm rate0.10.10.20.3-0.3-0.4
Reaction time premature initiation rate0.70.91.11.0-1.1-0.8
Reaction time premature initiations2.23.23.81.8-2.0-1.5
Std. dev. reaction times0.20.30.5-0.70.70.0
Reaction time trials completed2.73.94.32.1-2.1-1.8
Reaction time trials AUC2.94.24.62.1-2.1-1.9
Run reversals in cocaine runway, females1.11.01.2-1.01.10.9
Run reversals in cocaine runway, males1.31.32.01.0-1.4-0.9
Latency to leave start box in cocaine runway0.10.10.3-0.40.20.5
Latency to leave start box in cocaine runway, F0.20.20.4-0.40.20.6
Latency to leave start box in cocaine runway, M0.10.10.1-0.30.10.3
Std. dev. time between licks in bursts0.70.90.9-0.90.90.9
Total sessions with >9 infusions0.20.20.6-0.30.20.8
Short access day 1 total inactive lever presses0.10.10.2-0.20.40.4
Short access day 10 total inactive lever presses0.40.50.60.7-0.6-0.8
Short access day 1 total infusions0.10.20.20.5-0.4-0.3
Short access day 10 total infusions0.50.50.6-0.70.80.7
Short access total infusions0.30.30.4-0.50.50.7
Short access day 1 locomotion0.90.91.1-0.91.01.0
Short access day 10 total locomotion0.70.81.0-0.80.91.0
Short access total locomotion0.10.10.2-0.30.30.4
One hour access (0.3 mA shock)0.00.00.10.3-0.2-0.1
Compulsive drug intake0.00.00.0-0.10.20.2
One hour access (shock baseline)0.00.00.1-0.10.10.3
Social response proportion0.20.30.30.5-0.5-0.5
Social responses0.20.20.5-0.20.20.7
Social time0.91.21.41.0-1.0-1.2
Soleus weight0.00.00.1-0.20.10.3
Bone: stiffness1.72.72.91.7-1.5-1.7
Tibialis anterior weight0.41.21.31.0-1.2-1.1
Time to tail flick, vehicle, before self-admin0.60.60.60.8-0.7-0.7
Time to tail flick, vehicle, after self-admin0.30.30.4-0.50.40.6
Time to tail flick, test, before self-admin0.10.00.10.2-0.3-0.0
Time to tail flick, test, after self-admin1.92.02.41.3-1.3-1.5
Delta time to tail flick, vehicle, before/after SA0.10.10.3-0.30.30.5
Delta time to tail flick, test, before/after SA1.21.11.61.0-0.9-1.2
Tibia length0.61.72.11.1-1.3-1.5
Ambulatory time before self-admin0.10.10.2-0.30.4-0.1
Ambulatory time after self-admin0.00.00.1-0.10.10.3
Bone: tissue strength0.20.20.30.4-0.3-0.6
Total heroin consumption1.11.31.61.2-1.2-0.9
Bone: trabecular number0.00.00.00.2-0.10.1
Bone: trabecular spacing0.00.00.1-0.20.1-0.2
Bone: trabecular thickness0.10.10.10.4-0.4-0.2
Bone: trabecular tissue density0.20.20.30.6-0.4-0.4
Water consumed over 24 hours3.13.74.32.0-2.1-1.7
Number of responses in last shaping day0.30.30.4-0.60.50.3