Depdc7

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression Depdc7 0.02 0.02 9.0e-03 0 0 -0 0 1.3e-01 2.7e-01 9.4e-01 3.5e-01
2 pVTA gene expression Depdc7 0.06 0.05 5.9e-03 0.02 0.04 0.02 0.02 5.3e-02 6.2e-03 4.4e-02 4.1e-02
3 Brain intron excision ratio chr3_91101172_91101314 0.02 0.02 9.9e-03 0 -0 -0 -0 3.4e-01 8.7e-01 9.5e-01 8.7e-01
4 Adipose mRNA stability Depdc7 0.1 0.07 9.1e-13 0.09 0.09 0.09 0.09 2.7e-10 3.2e-10 3.3e-10 3.2e-10

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.60.91.20.8-1.1-1.00.9
Area under the delay curve0.30.40.5-0.50.60.6-0.7
BMI with tail0.30.80.91.0-0.9-0.90.9
BMI without tail0.30.50.60.7-0.8-0.70.7
Body weight1.24.96.02.0-2.0-2.52.4
Weight adjusted by age0.20.20.40.10.30.6-0.6
Bone surface0.30.60.70.6-0.8-0.80.8
Bone volume0.71.31.51.0-1.2-1.21.1
Breakpoint value in progressive ratio session0.80.81.5-1.21.00.7-0.6
Number of licking bursts0.20.20.40.7-0.50.0-0.0
Context. condit. distance diff. score4.75.65.82.3-2.4-2.42.4
Locomotion velocity, session 11.51.61.7-1.31.31.3-1.3
Locomotion distance, session 10.30.40.5-0.40.50.7-0.7
Locomotion velocity, session 20.00.00.00.10.10.2-0.1
Locomotion distance, session 20.00.00.0-0.1-0.1-0.10.2
Locomotion velocity, session 30.10.10.10.3-0.20.2-0.3
Locomotion distance, session 30.10.10.10.2-0.20.3-0.3
Stereotopy head waving bouts, day 30.30.30.5-0.30.50.6-0.7
Stereotopy head waving duration, day 30.30.30.40.6-0.5-0.70.6
Locomotion velocity, session 70.10.10.20.3-0.3-0.40.4
Locomotion distance, session 70.10.10.2-0.40.30.2-0.1
Stereotopy head waving bouts, day 70.10.10.20.00.10.3-0.4
Stereotopy head waving duration, day 70.10.10.1-0.20.20.3-0.4
Locomotion velocity, session 80.30.40.60.5-0.6-0.70.8
Locomotion distance, session 82.94.34.72.0-2.2-2.12.1
Degree of sensitization distance0.20.20.3-0.60.4-0.40.5
Degree of sensitization stereotypy0.40.40.6-0.50.50.7-0.8
Conditioned locomotion6.77.88.8-2.52.82.9-3.0
Cocaine response after cond. corrected3.13.54.3-2.02.11.7-1.7
Cocaine response after cond. not corrected0.60.71.0-1.01.00.6-0.6
Cocaine response before conditioning6.47.88.22.7-2.9-2.82.8
Saline control response0.10.10.20.4-0.3-0.10.1
Bone: connectivity density0.71.01.30.9-1.1-1.01.0
Bone: cortical apparent density0.00.00.00.0-0.2-0.20.2
Bone: cortical area0.60.91.10.9-0.9-1.01.1
Bone: cortical porosity0.60.60.8-0.80.90.7-0.7
Bone: cortical porosity0.10.10.1-0.40.40.2-0.2
Bone: cortical thickness0.10.10.20.2-0.2-0.40.4
Bone: cortical thickness1.31.51.6-1.11.21.2-1.3
Bone: cortical tissue density0.00.00.10.0-0.2-0.20.2
Condit. Reinf. active minus inactive responses2.42.72.81.6-1.7-1.71.6
Condit. Reinf. active-inactive response ratio6.87.47.62.7-2.7-2.72.7
Condit. Reinf. active responses0.40.50.60.7-0.7-0.70.7
Condit. Reinf. inactive responses1.92.22.8-1.71.61.4-1.3
Incentive salience index mean1.72.12.31.4-1.4-1.51.5
Condit. Reinf. lever presses0.60.91.10.8-0.9-1.01.0
Condit. Reinf. active minus inactive responses2.63.23.51.7-1.7-1.81.9
Condit. Reinf. active-inactive response ratio6.06.36.52.5-2.5-2.52.6
Condit. Reinf. active responses1.62.22.41.5-1.4-1.51.5
Condit. Reinf. inactive responses0.00.00.00.00.10.2-0.2
Condit. Reinf. lever presses1.52.02.01.4-1.4-1.41.4
Condit. Reinf. lever reinforcers received1.62.22.31.5-1.4-1.51.5
Conditioned reinforcement - actives7.07.08.22.9-2.7-2.62.4
Conditioned reinforcement - inactives11.512.917.84.2-4.1-2.92.9
Conditioned locomotion3.74.56.22.5-2.2-1.81.8
Patch foraging indifference point 0 sec0.50.81.80.00.41.2-1.3
Patch foraging indifference point AUC1.01.11.3-1.21.11.0-0.9
Delay disc. indifference point, 0s delay0.00.00.00.2-0.20.00.1
Delay disc. indifference point, 16s delay0.80.81.1-0.80.90.9-1.0
Delay disc. indifference point, 2s delay0.10.10.20.4-0.3-0.30.2
Delay disc. indifference point, 24s delay0.30.30.6-0.70.70.2-0.4
Delay disc. indifference point, 4s delay0.20.20.3-0.60.60.3-0.4
Delay disc. indifference point, 8s delay0.00.00.1-0.00.0-0.30.1
Indifference point function ln k0.70.91.00.9-0.9-1.01.0
Indifference point function log k0.70.91.00.9-0.9-1.01.0
Patch foraging total patch changes 0 sec0.50.81.7-0.00.31.2-1.3
Patch foraging total patch changes 12 sec0.20.20.50.7-0.5-0.30.2
Patch foraging total patch changes 18 sec0.20.30.5-0.10.30.7-0.7
Patch foraging total patch changes 24 sec0.40.51.0-0.20.40.9-1.0
Patch foraging total patch changes 6 sec0.40.51.0-0.10.31.0-1.0
Patch foraging time to switch 0 sec0.30.50.80.9-0.7-0.60.6
Patch foraging water rate 0 sec0.00.00.0-0.10.10.1-0.1
Patch foraging water rate 12 sec0.00.00.0-0.20.1-0.10.1
Patch foraging water rate 18 sec0.40.60.60.8-0.7-0.80.7
Patch foraging water rate 24 sec0.10.20.30.2-0.3-0.50.5
Patch foraging water rate 6 sec0.00.00.1-0.30.10.0-0.0
Seeking ratio, delayed vs. immediate footshock0.30.30.50.4-0.6-0.70.4
Distance traveled before self-admin0.40.40.90.4-0.6-1.00.6
Distance traveled after self-admin1.82.03.21.0-1.0-1.81.7
Extensor digitorum longus weight0.10.50.7-0.80.80.6-0.6
Bone: elastic displacement0.50.60.9-1.00.80.7-0.6
Bone: elastic work0.00.00.0-0.10.10.2-0.2
Bone: endosteal estimation0.10.20.2-0.30.40.4-0.5
Bone: endosteal perimeter0.10.30.50.7-0.6-0.40.5
Epididymis fat weight1.43.23.61.9-1.9-1.71.7
Delta time in closed arm before/after self-admin0.00.00.1-0.00.10.3-0.3
Delta time in open arm before/after self-admin1.11.01.5-1.21.20.8-0.8
Diff in mean of infusions in LGA sessions0.10.10.30.1-0.2-0.50.2
Delay discount exponential model param0.40.50.60.6-0.7-0.60.7
Extinction: sum of active levers before priming0.10.10.30.0-0.3-0.30.5
Active lever presses in extinction session 60.50.50.80.9-0.8-0.40.7
Bone: final force0.10.20.30.3-0.5-0.50.5
Bone: final moment0.10.10.10.1-0.3-0.30.4
Food consumed during 24 hour testing period4.75.76.52.2-2.3-2.52.5
Glucose1.52.32.91.2-1.5-1.71.7
Heart weight0.30.50.7-0.80.60.7-0.6
Delay discount hyperbolic model param0.30.30.30.5-0.6-0.40.6
Intermittent access intake day 1-15 change0.60.61.11.0-0.8-0.50.5
Intermittent access intake escalation0.60.61.21.1-0.9-0.50.5
Intermittent access intake escalation 21.11.01.31.1-1.1-0.91.0
Intermitt. access day 1 inactive lever presses2.93.13.81.9-1.9-1.81.4
Intermitt. access day 15 inactive lever presses5.66.17.12.3-2.4-2.72.5
Intermitt. access escalation Index0.10.10.3-0.50.5-0.00.1
Intermittent access day 1 total infusions3.33.84.41.9-1.8-2.11.9
Intermittent access day 15 total infusions4.34.95.92.4-2.2-2.12.0
Intermittent access terminal intake (last 3 days)4.24.65.52.3-2.2-2.02.0
Intermittent access total infusions4.95.45.82.4-2.3-2.32.2
Intermittent access day 1 locomotion1.92.03.01.7-1.5-1.41.1
Intermittent access day 15 total locomotion0.50.51.31.1-0.8-0.10.1
Intermittent access total locomotion2.02.23.92.0-1.7-1.20.9
Intermittent access standard deviation2.52.63.21.7-1.8-1.51.5
Left kidney weight1.23.43.91.7-1.8-2.02.0
Right kidney weight1.02.72.81.7-1.6-1.71.7
Cocaine induced anxiety2.22.53.11.8-1.7-1.41.4
Post-drug Anxiety0.50.50.60.8-0.7-0.80.7
Baseline Anxiety4.85.16.0-2.42.52.1-2.1
Tail length0.31.01.50.5-0.8-1.21.2
Length with tail0.82.94.11.3-1.4-2.02.0
Length without tail1.02.32.91.4-1.3-1.71.6
Times rat made contact with spout0.20.30.40.6-0.5-0.40.4
Lifetime Intake4.75.45.62.4-2.3-2.32.3
Liver weight, left1.32.12.81.1-1.3-1.61.7
Liver weight, right3.25.46.32.1-2.2-2.52.5
Locomotor activity0.00.00.0-0.10.1-0.10.1
Locomotor testing distance1.83.03.61.6-1.6-1.91.9
Locomotor testing rearing0.71.11.41.0-0.9-1.21.1
Locomotion in novel chamber0.30.40.50.7-0.6-0.60.6
Locomotion in novel chamber post-restriction1.72.12.3-1.51.31.4-1.5
Fecal boli incidents, locomotor time 15.86.37.7-2.82.72.2-2.3
Change in fecal boli incidents, locomotor task1.81.72.11.5-1.4-1.21.2
Time >=10cm from walls, locomotor time 10.60.61.1-1.00.80.7-0.6
Bouts of movement, locomotor time 10.20.20.4-0.10.1-0.70.5
Total resting periods, locomotor time 10.10.20.2-0.40.3-0.50.4
Rest time, locomotor task time 11.41.52.8-1.71.40.8-0.8
Distance moved, locomotor task time 12.42.62.81.6-1.7-1.51.6
Vertical activity count, locomotor time 10.30.30.60.7-0.7-0.30.4
Time >=10cm from walls, locomotor time 23.63.84.61.7-1.9-2.12.1
Bouts of movement, locomotor time 21.71.82.21.5-1.4-1.31.3
Total resting periods, locomotor time 21.61.72.11.4-1.4-1.21.2
Rest time, locomotor task time 23.74.34.7-2.02.02.2-2.2
Distance moved, locomotor task time 24.55.37.21.7-2.0-2.62.7
Vertical activity count, locomotor time 24.04.34.91.9-2.0-2.22.2
Light reinforcement 10.10.10.10.3-0.3-0.30.3
Light reinforcement 20.30.51.0-1.00.80.4-0.4
Bone: marrow area0.10.20.2-0.30.40.4-0.5
Bone: maximum diameter0.30.50.60.7-0.6-0.70.8
Bone: maximum force0.20.30.50.7-0.6-0.40.3
Bone: maximum moment0.00.10.20.4-0.3-0.10.1
Mean time between licks in bursts0.50.71.1-0.50.71.0-1.0
Mean num. licks in bursts0.10.10.2-0.20.1-0.40.4
Cd content in liver0.20.30.40.4-0.5-0.60.6
Co content in liver1.21.41.9-1.41.31.0-1.0
Cu content in liver0.70.91.3-1.11.10.7-0.8
Fe content in liver0.10.10.2-0.50.40.1-0.2
K content in liver1.31.31.8-0.80.91.3-1.3
Mg content in liver0.80.81.0-0.80.81.0-1.0
Mn content in liver1.82.12.8-1.31.21.7-1.6
Na content in liver0.10.10.20.5-0.5-0.20.2
Rb content in liver0.80.91.4-1.21.10.8-0.8
Se content in liver3.84.65.1-2.12.32.1-2.1
Sr content in liver0.00.00.00.1-0.1-0.10.1
Zn content in liver0.91.01.6-1.31.10.8-0.8
Bone: minimum diameter1.32.42.71.5-1.5-1.61.6
Time in familiar zone, hab. session 11.00.91.1-1.01.00.9-0.9
Time in novel zone, hab. session 11.71.71.91.4-1.4-1.21.2
Total zone transitions, hab. session 11.41.92.71.6-1.6-1.11.1
Total locomotion distance, hab. session 10.20.20.60.8-0.60.1-0.2
Locomotion velocity, hab. session 10.10.20.40.6-0.40.3-0.4
Time in familiar zone, hab. session 20.50.50.7-0.40.50.8-0.8
Time in novel zone, hab. session 20.60.60.90.4-0.5-0.91.0
Total zone transitions, hab. session 20.50.60.80.8-0.9-0.70.7
Total locomotion distance, hab. session 20.70.91.3-0.80.81.1-1.2
Locomotion velocity, hab. session 20.60.91.3-0.60.71.1-1.1
Novel to familiar place preference ratio2.62.63.81.9-1.8-1.41.3
Novelty place preference3.03.04.12.0-1.8-1.51.5
Time in novel zone, NPP test2.52.63.31.8-1.7-1.41.4
Total zone transitions, NPP test1.82.52.6-1.61.51.6-1.6
Total locomotion distance, NPP test2.63.64.0-1.71.82.0-2.0
Locomotion velocity, NPP test2.33.23.7-1.61.71.9-1.9
Intraocular pressure0.50.71.0-0.70.61.0-0.9
Delta distance traveled before/after self-admin0.20.20.40.2-0.1-0.40.6
Delta ambulatory time before/after self-admin0.50.51.00.5-0.4-0.71.0
Parametrial fat weight0.30.60.90.6-0.5-0.90.9
Pavlov. Cond. lever latency0.40.50.7-0.60.70.8-0.8
Pavlov. Cond. magazine entry latency1.52.02.51.2-1.3-1.61.5
Pavlov. Cond. change in total contacts0.00.00.0-0.20.2-0.0-0.0
Pavlov. Cond. index score0.40.50.70.4-0.5-0.80.8
Pavlov. Cond. latency score0.40.50.70.5-0.6-0.90.9
Pavlov. Cond. lever contacts0.40.50.70.4-0.6-0.90.9
Pavlov. Cond. magazine entry number1.82.22.7-1.21.41.7-1.6
Pavlov. Cond. intertrial magazine entries0.00.00.10.3-0.10.2-0.2
Pavlov. Cond. lever-magazine prob. diff.0.20.30.40.2-0.3-0.60.7
Pavlov. Cond. response bias1.11.42.00.8-1.0-1.41.4
Pavlov. Cond. lever latency2.33.03.3-1.61.71.8-1.8
Pavlov. Cond. magazine entry latency1.01.11.31.1-1.2-1.01.0
Pavlov. Cond. change in total contacts0.50.60.70.7-0.8-0.80.9
Pavlov. Cond. index score2.02.62.71.5-1.6-1.61.7
Pavlov. Cond. latency score1.92.32.41.5-1.6-1.51.5
Pavlov. Cond. lever contacts2.83.94.11.9-2.0-2.02.0
Pavlov. Cond. magazine entry number0.70.91.1-1.01.00.8-0.9
Pavlov. Cond. intertrial magazine entries0.10.10.10.2-0.2-0.40.4
Pavlov. Cond. lever-magazine prob. diff.1.92.42.61.4-1.6-1.61.6
Pavlov. Cond. response bias2.94.04.31.9-2.0-2.02.1
Time in closed arm before self-admin4.14.74.92.2-2.2-2.12.0
Time in closed arm after self-admin2.52.53.21.8-1.7-1.51.3
Time in open arm before self-admin3.03.33.9-2.01.81.8-1.6
Time in open arm after self-admin6.26.88.3-2.82.92.4-2.3
Bone: periosteal estimation0.00.00.10.2-0.2-0.20.2
Bone: periosteal perimeter0.50.90.91.0-0.9-0.91.0
Bone: post-yield work0.20.30.6-0.10.20.8-0.8
Progressive ratio test 1 active lever presses2.93.13.21.7-1.8-1.81.8
Progressive ratio test 1 breakpoint2.62.72.81.6-1.6-1.71.6
Progressive ratio test 1 inactive lever presses3.53.84.12.0-2.0-2.01.8
Progressive ratio test 2 active lever presses3.33.64.12.0-1.9-1.81.7
Progressive ratio test 2 breakpoint4.14.65.12.3-2.2-2.12.0
Progressive ratio test 2 inactive lever presses6.87.99.33.1-2.9-2.72.6
Incentive Sensitization - Responses1.91.92.31.3-1.3-1.51.4
Incentive Sensitization - Breakpoint1.51.61.81.2-1.2-1.31.3
Sum of active levers in priming session hrs 5-60.60.61.2-1.10.90.3-0.2
Progressive ratio0.30.30.50.7-0.7-0.30.3
Food seeking constrained by brief footshock0.30.40.60.5-0.6-0.70.6
Seeking ratio, punishment vs. effort0.30.40.5-0.70.70.5-0.5
Retroperitoneal fat weight14.046.052.87.3-7.0-6.46.3
Reaction time number correct0.10.10.4-0.60.50.1-0.1
Reaction time mean minus median0.00.00.1-0.40.20.10.0
Reaction time mean minus median AUC0.00.00.1-0.30.1-0.10.2
Reaction time num false alarms2.93.94.8-1.71.82.2-2.2
Reaction time num false alarms AUC3.75.25.8-2.12.22.4-2.4
Reaction time trials correct on left0.10.10.4-0.60.50.1-0.1
Reaction time trials on left0.10.20.4-0.70.50.1-0.2
Reaction time mean0.40.50.90.4-0.6-0.80.9
Reaction time mean AUC0.60.81.40.5-0.7-1.11.2
Median of all reaction times0.81.11.60.7-0.9-1.21.3
Reaction time omissions0.40.50.6-0.70.60.7-0.7
Reaction time false alarm rate3.44.85.9-1.82.02.4-2.4
Reaction time premature initiation rate0.10.20.30.10.10.6-0.6
Reaction time premature initiations0.20.20.4-0.30.40.6-0.6
Std. dev. reaction times0.00.00.1-0.10.0-0.20.3
Reaction time trials completed0.10.20.4-0.70.50.1-0.2
Reaction time trials AUC0.10.10.2-0.50.3-0.00.0
Run reversals in cocaine runway, females2.32.33.11.4-1.4-1.81.3
Run reversals in cocaine runway, males0.20.20.5-0.30.40.3-0.7
Latency to leave start box in cocaine runway0.50.60.8-0.70.80.9-0.6
Latency to leave start box in cocaine runway, F0.70.81.1-0.80.81.0-0.9
Latency to leave start box in cocaine runway, M0.00.00.1-0.00.00.10.3
Std. dev. time between licks in bursts0.30.30.80.9-0.7-0.10.0
Total sessions with >9 infusions2.52.82.91.7-1.7-1.71.7
Short access day 1 total inactive lever presses0.70.81.31.1-1.0-0.70.6
Short access day 10 total inactive lever presses0.70.81.00.7-0.9-1.00.9
Short access day 1 total infusions6.36.76.82.6-2.6-2.62.6
Short access day 10 total infusions1.82.02.21.4-1.4-1.41.5
Short access total infusions3.33.74.31.8-1.8-2.02.1
Short access day 1 locomotion0.60.70.80.8-0.7-0.80.9
Short access day 10 total locomotion1.51.72.61.6-1.4-1.20.8
Short access total locomotion1.11.11.51.2-1.1-1.10.8
One hour access (0.3 mA shock)3.64.24.62.1-2.1-2.01.9
Compulsive drug intake2.12.12.6-1.61.51.4-1.4
One hour access (shock baseline)5.86.87.72.8-2.6-2.52.5
Social response proportion3.74.05.4-2.32.01.8-1.8
Social responses0.30.40.9-0.90.60.4-0.3
Social time6.18.010.0-3.22.92.7-2.6
Soleus weight0.41.31.5-1.01.11.2-1.2
Bone: stiffness0.50.81.21.1-1.0-0.70.7
Tibialis anterior weight1.55.35.8-2.42.42.2-2.2
Time to tail flick, vehicle, before self-admin0.40.40.60.6-0.6-0.40.8
Time to tail flick, vehicle, after self-admin2.62.83.82.0-1.9-1.51.2
Time to tail flick, test, before self-admin0.40.40.70.6-0.6-0.40.8
Time to tail flick, test, after self-admin0.70.71.01.0-1.0-0.60.8
Delta time to tail flick, vehicle, before/after SA0.90.91.31.1-1.2-0.90.5
Delta time to tail flick, test, before/after SA0.30.30.4-0.30.40.6-0.7
Tibia length0.10.20.3-0.60.3-0.30.4
Ambulatory time before self-admin0.60.71.40.4-0.6-1.20.9
Ambulatory time after self-admin3.03.35.11.4-1.4-2.32.1
Bone: tissue strength0.70.70.8-0.90.80.9-0.9
Total heroin consumption0.30.40.6-0.80.60.3-0.6
Bone: trabecular number0.60.91.10.8-1.1-1.00.9
Bone: trabecular spacing0.00.00.10.3-0.1-0.20.2
Bone: trabecular thickness0.30.40.60.3-0.6-0.80.7
Bone: trabecular tissue density0.60.91.0-0.91.01.0-0.9
Water consumed over 24 hours0.50.60.70.8-0.8-0.70.7
Number of responses in last shaping day2.62.72.91.6-1.6-1.71.7